Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G22275 347 / 2e-107 ZYP1b Myosin heavy chain-related protein (.1) AT1G22260 341 / 7e-105 AtZYP1a, ZYP1a Myosin heavy chain-related protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036517 [exp] 1084 / 0 AT1G22260 663 / 0.0 Myosin heavy chain-related protein (.1) Lus10041143 [exp] 879 / 0 AT1G22260 451 / 8e-148 Myosin heavy chain-related protein (.1) Lus10010242 [exp] 652 / 0 AT1G22275 279 / 5e-83 Myosin heavy chain-related protein (.1) Lus10036473 [exp] 219 / 7e-67 AT1G22275 86 / 6e-20 Myosin heavy chain-related protein (.1) Lus10019419 [exp] 128 / 1e-34 AT1G22260 47 / 4e-07 Myosin heavy chain-related protein (.1) Lus10030096 [exp] 74 / 7e-16 AT1G22275 47 / 4e-07 Myosin heavy chain-related protein (.1) Lus10029303 [exp] 44 / 0.0007 AT5G52280 126 / 6e-29 Myosin heavy chain-related protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G096400 [exp] 459 / 8e-150 AT1G22275 786 / 0.0 Myosin heavy chain-related protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10032798 pacid=23164844 polypeptide=Lus10032798 locus=Lus10032798.g ID=Lus10032798.BGIv1.0 annot-version=v1.0 ATGAAGAAACTAGCGTTTCCTAGCTTGAGGAGCTTGGATCATTTCAAGGCAGCGGCCGGATCGGCGAAGAGCTTCTCGTATCCTTCACGCTCATCTTCCT ATCAGATGTCGCTGGGAAGTTTCACCAATCTAAAGGTTGCTGCAGAGAAATTGGTGAAAGAGCAAGCTACTCTGAAAACAGATCTGGAAACAGCGAACAA CAAGCTTAAGAAGTCGGCGGAGAATGTCCGTGCTCTAGAGGAAAAGTTGCAGAACGCGTTTCATGAGAATGTAAAGCTGCAAGTTGAGCGTAAAAAGGAC GAGAAGCTTTGGAATGGATTGGAGTCTAGTTTCTGTTCAACCAAATCAATGTGCGATCAACTATCAGAGACTTTAGATCGTTTAGCTGTACAACTTCAGG ATGCTGAAAAGGACAAGGAATTTTTTGAATGCAAGCTATCCACAAGTTCAAATGCCATCGACATCATGAATCAACAAATACACGATCTGTCTCTGAAACT AACCTCTACTGAGGAAACTTTGACCACTCATTCCACGATCAAGCAGTTTGAAGCAAGCCTGGCGGAAAATCAATCAGACATGAGGATTCTAAACTCGAAA CTGGAAAACTTGCATCTGGAATTGAAGCTAAAGGACGATGAAATCAAGAATTCCTCGATTGCTTTCTATAACTTGGAGAAAGAAAATAGTGACCTGCAAC TGACCAAGGAGAGATTTTCTAACGTCTTAGTTGCCTCACATGATGAGATAAGGAAGTTGGAAAGTTTTGTTAATGTCTTGACTGCACAGTTAGTTCAACT TGACAACCAAAGTCTGTATTTCACCAAAAACTTTGATCTCCTAAGTTCTCTCTATGATACTTCCTCTAAGTTGATCCAGGAAGAGAAAGACCTTGTCTCC AAGCATGCTAACAAGCAATACGATATGCTCCACAACCAAGTCGTGGGAATGACATCTGAAAGAGAGGAGATGCAACTGACGATCAAGGAACTGAATGATA AGATATATGAGCTTGAGAAGGCACAAGACTCTATTAGAGAAGTGCTCGCGGGGGAACAGAAATTAGCTGCTCAGAAAATTAGCAAGGTGGAAGCAGAGGC AAAAGCACTAGGAAAAAAGAAGGATGAAACGGAGTTTATAGTTTCAAACTTGGAGGAGAAATTCGCTGCTTTATCAGAAAGCTCAAGATCATCTGAGAAA GAAATGGAACAAATTCTGCAGAAACTAGCAAGGCTAGAAGAGGAGAAAAGAGACAGCATAGGAAAGTTGCAGGCGGATATACAGGAAAAGGTAGATGAAA TCGAAAATCTTCTGAAGGAGTTTGCAAAATATTACCAAGAAGTACATTCATGGGAGAAGAAAGTCGACGAACTTCAAAACATGGTGCAAGAAAAGGAAGA AATTATTCTGCAAGGCAAGGAGAGTGAAAGAAAGTTGGAAGATCAAATCAATGAGGTTAAGGCATCATTGACCACAGCTGAAAGTAGACTCGTGGAAGTA AGGAAGCAATGTGAGGTGCTGCTTGACAGCAAGGAACGGGAATTGTCCAAGCATTTGCAAGAAATTTCTACTGGGAATGATCAGGCAATAGCTGAAATTC GGATGAAGTATGAGGATGAGAAGGCAGAAATCATTAACATGGAAAAGGAAAAGGTGAACAAACTACTACGTGACATGGAAAGGAACTATGACCAGAAAAT TTCTGAGCAATTACTGCGCATTCAAGAGGAGCATGCTGCACTGATCCAGCAGGAAAATGAAACAAAGGAAATGATGCTTAAAGCTAATCACAACGAAGAG CTTAAGCTTGCAGGACTTCAAGCTGAGGAAGGACAAAGAGAGGAAGATAAGCAGAGGGCTTTGCTGCAGATGCAATGGAAAGTGATGAGTGACAAACAAG ATAATAATGATGCAGAAGTGAACTCTAAACAGGTCCCGTCGAATTCAACTGTCCAGATGCTAGACTCCAGAACTCGTAAAAGTCCAAGATCACTGTCAAG ACCAGACAATGCTAAGACAGCATCTGTAATGCCGACCAGGAAGGTAACCCATCCTGAATACGAGACTGAACGTGGTGATGGTAAGTCAATCTCGAAACGG AGAAAGATAAGAAATACGGTCGTGCACGAGGATCCTAGGAAGCATAAGAAGAGCACTCCAAAGGCTGTCACTCGACAAACTGCAATTAAGAGAGCCATAG GAGCTACCCAACAGAATCCATCCAACATTGGAGATCTCTTCTCAGAAGGCTCACTGAATCCATATGCAGATGATCCCTACGCTTTCAATTAG
AA sequence Show only first row Show all	>Lus10032798 pacid=23164844 polypeptide=Lus10032798 locus=Lus10032798.g ID=Lus10032798.BGIv1.0 annot-version=v1.0 MKKLAFPSLRSLDHFKAAAGSAKSFSYPSRSSSYQMSLGSFTNLKVAAEKLVKEQATLKTDLETANNKLKKSAENVRALEEKLQNAFHENVKLQVERKKD EKLWNGLESSFCSTKSMCDQLSETLDRLAVQLQDAEKDKEFFECKLSTSSNAIDIMNQQIHDLSLKLTSTEETLTTHSTIKQFEASLAENQSDMRILNSK LENLHLELKLKDDEIKNSSIAFYNLEKENSDLQLTKERFSNVLVASHDEIRKLESFVNVLTAQLVQLDNQSLYFTKNFDLLSSLYDTSSKLIQEEKDLVS KHANKQYDMLHNQVVGMTSEREEMQLTIKELNDKIYELEKAQDSIREVLAGEQKLAAQKISKVEAEAKALGKKKDETEFIVSNLEEKFAALSESSRSSEK EMEQILQKLARLEEEKRDSIGKLQADIQEKVDEIENLLKEFAKYYQEVHSWEKKVDELQNMVQEKEEIILQGKESERKLEDQINEVKASLTTAESRLVEV RKQCEVLLDSKERELSKHLQEISTGNDQAIAEIRMKYEDEKAEIINMEKEKVNKLLRDMERNYDQKISEQLLRIQEEHAALIQQENETKEMMLKANHNEE LKLAGLQAEEGQREEDKQRALLQMQWKVMSDKQDNNDAEVNSKQVPSNSTVQMLDSRTRKSPRSLSRPDNAKTASVMPTRKVTHPEYETERGDGKSISKR RKIRNTVVHEDPRKHKKSTPKAVTRQTAIKRAIGATQQNPSNIGDLFSEGSLNPYADDPYAFN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G22260		AtZYP1a, ZYP1a	Myosin heavy chain-related pro...		Lus10032798 [exp]	0	1
AT5G62310		IRE	INCOMPLETE ROOT HAIR ELONGATIO...		Lus10027196 [exp]	1.7	0.8668
AT2G16430		ATPAP10, PAP10	purple acid phosphatase 10 (.1...		Lus10041959 [exp]	5.1	0.8506
AT2G28260		ATCNGC15	cyclic nucleotide-gated channe...		Lus10037394 [exp]	5.3	0.8149
AT5G63800		MUM2, BGAL6	MUCILAGE-MODIFIED 2, beta-gala...		Lus10033502 [exp]	7.7	0.8434
AT5G40270			HD domain-containing metal-dep...		Lus10029160 [exp]	8.4	0.8355
AT1G04500			CCT motif family protein (.1)		Lus10023727 [exp]	9.5	0.8124
AT1G69850		NTL1, ATNRT1:2	nitrate transporter 1:2 (.1)		Lus10015240 [exp]	9.6	0.8448
AT5G27000		KATD, ATK4	KINESIN-LIKE PROTEIN IN ARABID...		Lus10029865 [exp]	9.9	0.8495
AT3G47570			Leucine-rich repeat protein ki...		Lus10030587 [exp]	10.3	0.7268
AT1G05570		ATGSL6, ATGSL06...	GLUCAN SYNTHASE-LIKE 6, callos...		Lus10037469 [exp]	10.7	0.8028

Compare expression of checked genes

Lus10032798 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.