Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G58520 454 / 2e-151 RXW8 lipases;hydrolases, acting on ester bonds (.1.2.3) AT1G10090 417 / 5e-137 Early-responsive to dehydration stress protein (ERD4) (.1) AT1G69450 280 / 3e-85 Early-responsive to dehydration stress protein (ERD4) (.1), Early-responsive to dehydration stress protein (ERD4) (.2) AT3G01100 278 / 2e-84 ATHYP1, HYP1 ARABIDOPSIS THALIANA HYPOTHETICAL PROTEIN 1, hypothetical protein 1 (.1.2) AT3G54510 237 / 1e-69 Early-responsive to dehydration stress protein (ERD4) (.1), Early-responsive to dehydration stress protein (ERD4) (.2) AT1G11960 191 / 5e-52 ERD (early-responsive to dehydration stress) family protein (.1) AT4G22120 188 / 3e-51 ERD (early-responsive to dehydration stress) family protein AT1G32090 188 / 7e-51 early-responsive to dehydration stress protein (ERD4) (.1) AT4G02900 186 / 3e-50 ERD (early-responsive to dehydration stress) family protein (.1) AT3G21620 185 / 5e-50 ERD (early-responsive to dehydration stress) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010365 [exp] 900 / 0 AT1G58520 800 / 0.0 lipases;hydrolases, acting on ester bonds (.1.2.3) Lus10004597 [exp] 699 / 0 AT1G58520 845 / 0.0 lipases;hydrolases, acting on ester bonds (.1.2.3) Lus10004550 [exp] 686 / 0 AT1G58520 842 / 0.0 lipases;hydrolases, acting on ester bonds (.1.2.3) Lus10037139 [exp] 281 / 2e-85 AT1G69450 890 / 0.0 Early-responsive to dehydration stress protein (ERD4) (.1), Early-responsive to dehydration stress protein (ERD4) (.2) Lus10030431 [exp] 271 / 1e-81 AT1G69450 867 / 0.0 Early-responsive to dehydration stress protein (ERD4) (.1), Early-responsive to dehydration stress protein (ERD4) (.2) Lus10005223 [exp] 270 / 4e-81 AT3G01100 895 / 0.0 ARABIDOPSIS THALIANA HYPOTHETICAL PROTEIN 1, hypothetical protein 1 (.1.2) Lus10036752 [exp] 223 / 3e-69 AT1G58520 208 / 7e-63 lipases;hydrolases, acting on ester bonds (.1.2.3) Lus10043455 [exp] 207 / 8e-58 AT3G54510 883 / 0.0 Early-responsive to dehydration stress protein (ERD4) (.1), Early-responsive to dehydration stress protein (ERD4) (.2) Lus10002133 [exp] 196 / 1e-53 AT1G32090 1136 / 0.0 early-responsive to dehydration stress protein (ERD4) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G113800 [exp] 556 / 0 AT1G58520 827 / 0.0 lipases;hydrolases, acting on ester bonds (.1.2.3) Potri.004G115800 [exp] 298 / 9e-92 AT3G01100 866 / 0.0 ARABIDOPSIS THALIANA HYPOTHETICAL PROTEIN 1, hypothetical protein 1 (.1.2) Potri.010G164100 [exp] 288 / 5e-88 AT1G69450 844 / 0.0 Early-responsive to dehydration stress protein (ERD4) (.1), Early-responsive to dehydration stress protein (ERD4) (.2) Potri.008G091200 [exp] 275 / 3e-83 AT1G69450 872 / 0.0 Early-responsive to dehydration stress protein (ERD4) (.1), Early-responsive to dehydration stress protein (ERD4) (.2) Potri.003G200900 [exp] 241 / 2e-70 AT3G54510 886 / 0.0 Early-responsive to dehydration stress protein (ERD4) (.1), Early-responsive to dehydration stress protein (ERD4) (.2) Potri.001G133800 [exp] 196 / 1e-53 AT1G32090 1061 / 0.0 early-responsive to dehydration stress protein (ERD4) (.1) Potri.003G099800 [exp] 194 / 5e-53 AT1G32090 1094 / 0.0 early-responsive to dehydration stress protein (ERD4) (.1) Potri.004G006000 [exp] 193 / 7e-53 AT4G22120 1139 / 0.0 ERD (early-responsive to dehydration stress) family protein Potri.011G009900 [exp] 181 / 1e-48 AT4G22120 1142 / 0.0 ERD (early-responsive to dehydration stress) family protein Potri.004G005900 [exp] 180 / 4e-48 AT4G22120 1151 / 0.0 ERD (early-responsive to dehydration stress) family protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0416 [flax] [poplar] Anoctamin-like PF02714 [flax] [poplar] RSN1_7TM Calcium-dependent channel, 7TM region, putative phosphate
Representative CDS sequence Show only first row Show all	>Lus10032801 pacid=23164827 polypeptide=Lus10032801 locus=Lus10032801.g ID=Lus10032801.BGIv1.0 annot-version=v1.0 ATGGAATTTGCAGCCCTTTTAACTTCGGCGGGAATCAATATAGCTATGTGCGTGTTGCTTTTCACACTCTACTCTGTTCTAAGAAAGCAGCCAAGTAATA GGATTGTGTATTTTGGCCGGAGGCTCGCCTCGGTACAATTGAGTAGCAACGATCCTTTCTCCTTGGAGAGATTTGTACCTTCTACAAGTTGGTTAATTAA GGCTTGGGAAACATCTGAAGACGAAATATTGACTGTTGGTGGGTTGGATGCTGTTGTTTTTCAGAGAATACTTGTCTTCAGTATCCGTATCTTCTCCATT TCTGCCATCATTTGCGTGTTTCTAGTGCTTCCGGTGAACTACTATGGGAAAGAAATGCAACATAAAAGGCTTGGAGCAGAATCGTTGGATGTTTTCACTA TTGGAAATGTCCAAGAAGGTTCAATGGAAGCAGAGAAGATGTGCAAGATGCTTAGCGCTGTTTCATCTGATCAAGGAGGTTTAAGGCCATTTTGTTTTTG TTCGTCAAATACACTTTCATTTCATATTCTTCAAGACCAACCAGAAAATGAAAGTGTTGGTGGGAGCATCAAATATTCTGATTTTGAAATTGCTCCACCA GATGATGAATGTCCTGTTGCTTTTGTCTTCTTCAAGACTCGATATGCGGCTGTTGTTGCCACACAGATGGTGCAATCTACAAATCCGATGTTGTGGGTGA CACAAGAAGCACCAGAACCACATGATGTTTTATGGTCAAGCTTGTCTATACCCTATAAGCAGCTTTGGCTCCGAAAGATAGCTACTCTTCTTGCTGCAAT AGTATTCATGTTTCTGTTTCTTGTCCCAGTGACATTTGTTCAAGGCTTGACTCAACTGGAAAAGCTATCAAAGACTTTTCCTTTCTTAAGAGGGCTTTTG AAGAACGACTCTATAAGTCATGTGGTGACAGGTTACTTGCCTAGCGTGATCTTGATGTTATTTTTATACACTGTGCCACCAATGATGATGCGCTTCTCAG CAATAGAAGCACCTGTGTCTCGCAGTAGACGAAAAAAGAGCGCATGCTTGAAAATATTGTACTTCACTATCTGGAATGTTTTCTTCGTAAACGTCCTCTC AGGCTCTGTTATTAGTCAATTAAATGTCTTCTCCACTGTAAGAGACATACCGCTGGAACTTGCCAGAGCAATACCCACCCAGGCTAGCTTCTTCATGACG TACGTGTTCACATCAGGTTGGGCAGGGTTGGCCTGTGAATTAATGCAACTTTTCGCATTCGTTTGCAACCTGTTCAAAAAGTTCATCCTTAGAAATTATG AAGATGCACATGATTGGCTGATGGCCTTCCCATACCATACAGAAATCCCAAGAGTTCTCTTATTTGTACTCATCGGGTTCACCTGTTCAATTATGGCACC TTTAATACTACCATTTTTGCTGATTTACTTCTTCATGGCGTACCTCATATATAGAAATCAGGACTCTCCAGTTGCATCCGGCTTCACCATCCCCCTGATC GTCTGCACGCTTCTGTTTAGCGAATACTGCAGACAGCGGTTTCTACCAGTTTTTAGGAAACATGCCGCTCAGGTTTTGATAGACATGGATAGAGAAGATG AAAATGGGGATAGATTTGAAGACATTTACAACCAGTTGCGTAATGCATATTGCCAGATACAATTAGCTTCACAGGGACTCCGGGCAGGTCGAGCAGTATC ACAAGTAATGGATGTTCCTGAGAACATCTCAGGTTCTGCAGCCCACAAGCCAGGTTCGTATAGCCGGTTAGTTGGGCTCTGTTACATTATTATGCTTTGA
AA sequence Show only first row Show all	>Lus10032801 pacid=23164827 polypeptide=Lus10032801 locus=Lus10032801.g ID=Lus10032801.BGIv1.0 annot-version=v1.0 MEFAALLTSAGINIAMCVLLFTLYSVLRKQPSNRIVYFGRRLASVQLSSNDPFSLERFVPSTSWLIKAWETSEDEILTVGGLDAVVFQRILVFSIRIFSI SAIICVFLVLPVNYYGKEMQHKRLGAESLDVFTIGNVQEGSMEAEKMCKMLSAVSSDQGGLRPFCFCSSNTLSFHILQDQPENESVGGSIKYSDFEIAPP DDECPVAFVFFKTRYAAVVATQMVQSTNPMLWVTQEAPEPHDVLWSSLSIPYKQLWLRKIATLLAAIVFMFLFLVPVTFVQGLTQLEKLSKTFPFLRGLL KNDSISHVVTGYLPSVILMLFLYTVPPMMMRFSAIEAPVSRSRRKKSACLKILYFTIWNVFFVNVLSGSVISQLNVFSTVRDIPLELARAIPTQASFFMT YVFTSGWAGLACELMQLFAFVCNLFKKFILRNYEDAHDWLMAFPYHTEIPRVLLFVLIGFTCSIMAPLILPFLLIYFFMAYLIYRNQDSPVASGFTIPLI VCTLLFSEYCRQRFLPVFRKHAAQVLIDMDREDENGDRFEDIYNQLRNAYCQIQLASQGLRAGRAVSQVMDVPENISGSAAHKPGSYSRLVGLCYIIML

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G58520		RXW8	lipases;hydrolases, acting on ...		Lus10032801 [exp]	0	1
AT5G17230		PSY	PHYTOENE SYNTHASE (.1.2.3)		Lus10001416 [exp]	4.5	0.8402
AT1G60460			unknown protein		Lus10041115 [exp]	9.5	0.7665
AT4G32140			EamA-like transporter family (...		Lus10026249 [exp]	15.6	0.8022
AT4G11800			Calcineurin-like metallo-phosp...		Lus10021750 [exp]	17.1	0.7685
AT1G54130		AT-RSH3, RSH3, ...	RELA/SPOT homolog 3 (.1)		Lus10002139 [exp]	17.8	0.7971
AT3G02300			Regulator of chromosome conden...		Lus10013197 [exp]	18.0	0.8031
AT1G68260			Thioesterase superfamily prote...		Lus10035143 [exp]	25.9	0.7940
AT4G12560		CPR1, CPR30	CONSTITUTIVE EXPRESSER OF PR G...		Lus10017604 [exp]	26.7	0.7571
AT2G20100	bHLH		basic helix-loop-helix (bHLH) ...		Lus10023669 [exp]	30.0	0.7901
AT3G05630		PLDP2, PDLZ2, P...	PHOSPHOLIPASE D ZETA 2, phosph...		Lus10020672 [exp]	31.0	0.7497

Compare expression of checked genes

Lus10032801 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.