Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015702 [exp] 360 / 6e-129 ND 38 / 0.004 Lus10012087 [exp] 324 / 8e-114 AT1G17930 57 / 4e-09 Aminotransferase-like, plant mobile domain family protein (.1) Lus10010402 [exp] 317 / 6e-112 ND / Lus10008255 [exp] 252 / 2e-82 AT1G48120 49 / 1e-05 hydrolases;protein serine/threonine phosphatases (.1) Lus10003272 [exp] 241 / 8e-82 ND 39 / 0.002 Lus10000801 [exp] 224 / 5e-73 ND / Lus10007197 [exp] 191 / 2e-63 ND / Lus10005203 [exp] 188 / 7e-62 ND / Lus10005265 [exp] 180 / 3e-59 ND /
Poplar homologues Show only best Show top 10	No hit found
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF10536 [flax] [poplar] PMD Plant mobile domain
Representative CDS sequence Show only first row Show all	>Lus10032804 pacid=23164822 polypeptide=Lus10032804 locus=Lus10032804.g ID=Lus10032804.BGIv1.0 annot-version=v1.0 ATGGATTCCCGTGATGTTTATTGGCTTCCTTTTGGGCCTCAGCCCGACATTGAGGTCCAGGCCACGACTTACCGTGGTCTCCTCTGTTGCGCCGATGTAG GGGAGTTCTACGATTCTTATCGTGTGCTCCGACAGTTTGGCTTCACACAGGTCGTCCCCCCCTCGATCCCTGTGCCGCTACGGGCCGTTAGGCCCAAATC TATCAGGACATATGCCGTCCAGTGGGCCCCGGCAGATGATAGGATGTGGTTGGAGCAGGACTTCATCAGATTTCACCGGCTTCACCTTATGTTCGAGAGG ATCTCGGCTGGTGCGGATGTTGGTCCAGGGTACATGGACTGGTTCCTCGAGCACAGTCACTCACGCATCGTGGCGCCGGCTAACCCCGGTGTGGGAGTCC CGGCAGAGCTGATTACACAGCGAGTGTTCGATGGTATGGCCTCGTACTTCGATGGTACGCTTGGGCGGCAGCATGCCGACTCTCTTCAGGAGTACTACGA CCACATGGAGGGGCTTCAGATGCAGTTTCAGGATCTCTATACGGGATATCAGAGCCAGAGAGAGAGTTGA
AA sequence Show only first row Show all	>Lus10032804 pacid=23164822 polypeptide=Lus10032804 locus=Lus10032804.g ID=Lus10032804.BGIv1.0 annot-version=v1.0 MDSRDVYWLPFGPQPDIEVQATTYRGLLCCADVGEFYDSYRVLRQFGFTQVVPPSIPVPLRAVRPKSIRTYAVQWAPADDRMWLEQDFIRFHRLHLMFER ISAGADVGPGYMDWFLEHSHSRIVAPANPGVGVPAELITQRVFDGMASYFDGTLGRQHADSLQEYYDHMEGLQMQFQDLYTGYQSQRES

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10032804 [exp]	0	1
AT3G18080		BGLU44	B-S glucosidase 44 (.1)		Lus10017997 [exp]	2.8	0.9674
AT2G26490			Transducin/WD40 repeat-like su...		Lus10016289 [exp]	4.0	0.9674
AT2G34740			Protein phosphatase 2C family ...		Lus10038455 [exp]	4.5	0.7903
AT5G67360		ARA12	Subtilase family protein (.1)		Lus10008919 [exp]	4.9	0.9674
AT5G09360		LAC14	laccase 14 (.1)		Lus10036070 [exp]	5.7	0.9674
AT4G02050		STP7	sugar transporter protein 7 (....		Lus10008372 [exp]	6.3	0.9674
AT1G08080		ATACA7, ACA7	A. THALIANA ALPHA CARBONIC ANH...		Lus10021456 [exp]	6.9	0.9628
AT1G55790			Domain of unknown function (DU...		Lus10032900 [exp]	7.5	0.9518
					Lus10026808 [exp]	7.5	0.7955
					Lus10014629 [exp]	8.0	0.9378

Compare expression of checked genes

Lus10032804 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.