Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G10070 484 / 1e-172 ATBCAT-2 branched-chain amino acid transaminase 2 (.1.2.3) AT5G65780 455 / 9e-161 ATBCAT-5 branched-chain amino acid aminotransferase 5 / branched-chain amino acid transaminase 5 (BCAT5) (.1), branched-chain amino acid aminotransferase 5 / branched-chain amino acid transaminase 5 (BCAT5) (.2) AT3G49680 445 / 1e-156 ATBCAT-3 ,BCAT3 branched-chain aminotransferase 3 (.1.2) AT1G10060 441 / 1e-155 ATBCAT-1 branched-chain amino acid transaminase 1 (.1.2.3) AT1G50090 440 / 1e-155 D-aminoacid aminotransferase-like PLP-dependent enzymes superfamily protein (.1) AT1G50110 439 / 4e-155 D-aminoacid aminotransferase-like PLP-dependent enzymes superfamily protein (.1) AT3G19710 393 / 5e-137 BCAT4 branched-chain aminotransferase4 (.1) AT5G27410 70 / 5e-13 D-aminoacid aminotransferase-like PLP-dependent enzymes superfamily protein (.1.2) AT3G05190 66 / 9e-12 D-aminoacid aminotransferase-like PLP-dependent enzymes superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028246 [exp] 498 / 2e-175 AT1G10070 498 / 3e-174 branched-chain amino acid transaminase 2 (.1.2.3) Lus10019258 [exp] 437 / 3e-153 AT3G49680 613 / 0.0 branched-chain aminotransferase 3 (.1.2) Lus10011567 [exp] 436 / 5e-153 AT3G49680 615 / 0.0 branched-chain aminotransferase 3 (.1.2) Lus10011604 [exp] 433 / 5e-152 AT3G49680 568 / 0.0 branched-chain aminotransferase 3 (.1.2) Lus10007247 [exp] 423 / 7e-148 AT1G10070 517 / 0.0 branched-chain amino acid transaminase 2 (.1.2.3) Lus10028247 [exp] 401 / 9e-141 AT1G10070 469 / 6e-168 branched-chain amino acid transaminase 2 (.1.2.3) Lus10007246 [exp] 240 / 7e-78 AT3G49680 327 / 6e-111 branched-chain aminotransferase 3 (.1.2) Lus10035342 [exp] 57 / 8e-09 AT5G27410 910 / 0.0 D-aminoacid aminotransferase-like PLP-dependent enzymes superfamily protein (.1.2) Lus10029984 [exp] 47 / 1e-05 AT5G27410 869 / 0.0 D-aminoacid aminotransferase-like PLP-dependent enzymes superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G113600 [exp] 488 / 5e-174 AT1G10070 555 / 0.0 branched-chain amino acid transaminase 2 (.1.2.3) Potri.007G008000 [exp] 452 / 9e-160 AT5G65780 578 / 0.0 branched-chain amino acid aminotransferase 5 / branched-chain amino acid transaminase 5 (BCAT5) (.1), branched-chain amino acid aminotransferase 5 / branched-chain amino acid transaminase 5 (BCAT5) (.2) Potri.009G082600 [exp] 442 / 7e-156 AT1G50110 448 / 4e-158 D-aminoacid aminotransferase-like PLP-dependent enzymes superfamily protein (.1) Potri.009G082700 [exp] 426 / 2e-149 AT1G10070 446 / 2e-156 branched-chain amino acid transaminase 2 (.1.2.3) Potri.005G039100 [exp] 61 / 4e-10 AT5G27410 882 / 0.0 D-aminoacid aminotransferase-like PLP-dependent enzymes superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01063 [flax] [poplar] Aminotran_4 Amino-transferase class IV
Representative CDS sequence Show only first row Show all	>Lus10032806 pacid=23164776 polypeptide=Lus10032806 locus=Lus10032806.g ID=Lus10032806.BGIv1.0 annot-version=v1.0 ATGGATTGGGACGAACTGGGGTTCAGTCTGGTGAGCACTGATTATATGTACGTGATGAAAAGCGGTGGAGATGGGAGTTTCGACAAGGGACAACTCAATC CCTTTGGGAATATACAACTTAGCCCTGCATCTGGGGTCTTGAACTATGGCCAGGGACTGTTTGAAGGTACGAAGGCGTACAGAAAAGAGGATGGTGGGAT ACTATTGTTCCGCCCAGAACTAAACGCCATGAGAATGCAAAACGGTGCAGAAAGAATGTGTATGCCATGTCCATCAACACAACAATTCATCGAATCGGTG AAACAGACCGCCCTTGCAAACAATCGATGGGTGCCACCTACTGGGAAAGGGACATTGTACATCAGGCCGATGCTGCTAGGAAGTGGACCAGCATTAGGTG TGGCACCTGCGCCAGACTACACATTTCTCGTCTACGCTTCCCCTGTTGGCAACTACTTCAAGAATGGTGGATCGTTGAGCTTGTATGTGGAGGAGGAGTA TGATCGCTCTTCTCGTCGTGGAACAGGAGGAGTTAAAGCCATCGGAAATTACGCCCCGGTTCTGAAAGCAATGAGCAAAGCGAAAAGCAAAGGATTTTCT GATGTCCTGTTTTTGGACTCTGTGGAGAAGAAGAATGTGGAAGAAGCATCCGCTTGTAACATTTTCATGGTCAAGGGGAATATAATATCAACACCTGGTG CAGAGGGAAGCATTCTTCCAGGAGTAACTAGGAAATCAATCATTGAACTCGCACGTGACCATGGGTACGAGCTTGAAGAAGGTGTTGTTGGAGTGGATAA GCTGTTGGAGGCTGATGAAGTTTTCTGTACGGGGACTGCCGTTGTAGTGGCGCCTGTCACGAGCATCACATATCGAGATCAAAGGGTTGAATATAAGACA GGAGAGGGATCAGTGAGTTGGGAATTGCACTCCACGCTGGTGGGGATCCAAACTGGGGTTATTCAAGATAACAAAGGCTGGACGCTTGAGATTAGTTGA
AA sequence Show only first row Show all	>Lus10032806 pacid=23164776 polypeptide=Lus10032806 locus=Lus10032806.g ID=Lus10032806.BGIv1.0 annot-version=v1.0 MDWDELGFSLVSTDYMYVMKSGGDGSFDKGQLNPFGNIQLSPASGVLNYGQGLFEGTKAYRKEDGGILLFRPELNAMRMQNGAERMCMPCPSTQQFIESV KQTALANNRWVPPTGKGTLYIRPMLLGSGPALGVAPAPDYTFLVYASPVGNYFKNGGSLSLYVEEEYDRSSRRGTGGVKAIGNYAPVLKAMSKAKSKGFS DVLFLDSVEKKNVEEASACNIFMVKGNIISTPGAEGSILPGVTRKSIIELARDHGYELEEGVVGVDKLLEADEVFCTGTAVVVAPVTSITYRDQRVEYKT GEGSVSWELHSTLVGIQTGVIQDNKGWTLEIS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G10070		ATBCAT-2	branched-chain amino acid tran...		Lus10032806 [exp]	0	1
AT1G29670			GDSL-like Lipase/Acylhydrolase...		Lus10005413 [exp]	4.1	0.9617
AT4G02320			Plant invertase/pectin methyle...		Lus10001467 [exp]	6.2	0.9579
AT1G02205		CER1	ECERIFERUM 1, Fatty acid hydro...		Lus10019510 [exp]	7.2	0.9557
AT4G02300			Plant invertase/pectin methyle...		Lus10001466 [exp]	7.3	0.9577
AT4G38260			Protein of unknown function (D...		Lus10016023 [exp]	9.7	0.9533
AT2G23945			Eukaryotic aspartyl protease f...		Lus10023451 [exp]	10.4	0.9021
AT5G13150		ATEXO70C1	exocyst subunit exo70 family p...		Lus10003142 [exp]	10.7	0.9263
					Lus10006164 [exp]	10.7	0.9513
AT3G04290		ATLTL1, LTL1	Li-tolerant lipase 1 (.1)		Lus10004771 [exp]	10.9	0.9459
AT4G16295		SPH1	S-protein homologue 1 (.1)		Lus10000683 [exp]	11.5	0.9513

Compare expression of checked genes

Lus10032806 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.