Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G10020 519 / 0 Protein of unknown function (DUF1005) (.1) AT4G29310 378 / 2e-128 Protein of unknown function (DUF1005) (.1) AT3G19680 337 / 2e-111 Protein of unknown function (DUF1005) (.1) AT1G50040 332 / 1e-109 Protein of unknown function (DUF1005) (.1) AT5G17640 271 / 2e-86 Protein of unknown function (DUF1005) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034991 [exp] 359 / 1e-120 AT4G29310 553 / 0.0 Protein of unknown function (DUF1005) (.1) Lus10012451 [exp] 330 / 1e-108 AT3G19680 349 / 1e-115 Protein of unknown function (DUF1005) (.1) Lus10020509 [exp] 323 / 2e-105 AT3G19680 320 / 1e-103 Protein of unknown function (DUF1005) (.1) Lus10012933 [exp] 281 / 1e-91 AT4G29310 434 / 4e-152 Protein of unknown function (DUF1005) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G112600 [exp] 588 / 0 AT1G10020 607 / 0.0 Protein of unknown function (DUF1005) (.1) Potri.005G150100 [exp] 580 / 0 AT1G10020 563 / 0.0 Protein of unknown function (DUF1005) (.1) Potri.009G084000 [exp] 384 / 3e-130 AT1G10020 389 / 3e-132 Protein of unknown function (DUF1005) (.1) Potri.001G288900 [exp] 369 / 2e-124 AT1G10020 365 / 5e-123 Protein of unknown function (DUF1005) (.1) Potri.013G071000 [exp] 269 / 9e-86 AT5G17640 639 / 0.0 Protein of unknown function (DUF1005) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF06219 [flax] [poplar] DUF1005 Protein of unknown function (DUF1005)
Representative CDS sequence Show only first row Show all	>Lus10032807 pacid=23164782 polypeptide=Lus10032807 locus=Lus10032807.g ID=Lus10032807.BGIv1.0 annot-version=v1.0 ATGGATCCCTGCCCTTTCATCCGCCTCACAGTGGGCAATCTCGCCCTCAAAACCCCCCACGCTTCCAAACCGGCTCTCTCCCTCATCCACCCTTCTTCTT CCCCTTGCTTCTGCAAGATCAAACTCAACAACTTCCCTTTACAGACTGCCGCCGTCCCTTACATTCCTTCCGACGACGACTCCCATCCTTTCTCTCTTGC CGCCACTTTCCACCTCAGTAAGTCCGATTTCGATCGCCTCCTTGCCAAATCCGTTTTCTCTAGTAAACTACAGCTCCAAATCTCTATCTACACTGGCCGC TGCGCCAACAACACCTGCTGCCTTAACTCCCGGAACAGGCTGCTCGGCAAAGTCCTTGTGCCCTTGGATCTTTCCGGATCTGACTCCAGAGCTTGCGTCT TCCACAACGGCTGGATTTCTGTAGGTAAAGAGGCGTCTAAGAAAGAATCATCGTCGTCCTCTCCTAGTGCTCAGTTTCATCTCAATGTCAAGGCCGACCC AGACCCTAGATTTGTGTTTCAGTTCGACGGTGAGCCCGAATGTAGCCCCCAAGTGTTTCAGATTCATGGCAATATCAGACAGCCTGTTTTCACCTGCAAG TTCAGCTTCAGGACTCCCGGCGACCGCAATCAGAGATCCAGATCATTCAAACTGGAATCAAGCACCGGAAGGAAGTGGTTGACAAGGAGAGGAGGCGAGA AACAGCGTCCAATCAAGGAACGTAAGGGATGGTCGATAACCGTACACGATCTATCCGGATCGCCGGTTGCCGCTGCTTCAATGGTGACTCCTTTCGTCCC CTCGCCCGGTTCCGACAGGGTCAGCCGGTCCAATCCAGGTTCCTGGCTAATCCTCCGTCCAGGAGGCGGAGCGTGGGAGCCGTGGGCCAGACTAGAAGCG TGGCGGGAACGCGGGGGTTCTGACGGGTTAGGATATCGGCTAGAGATGATACCGGACACGAGTGCCGCGGCGGCGGGAATCGTGCTGGCTGAGTCGACTC TGAGCAGCCGCAGAGGAGGGAAGTTCGTGGTCGATTTGGGAGGAGTGAACGGGTGCTCGTCGACGCCCGGAAGCGGGAACTCGCCGGCGTGCAGTCCAAG GAGCAGCGGTGATTATGGGCAATGGCCATACGGAGGAGGCGCGTACAGAGGAGGAGGTTTTGTGATGTCGAGTAGCGTGGAAGGGGAACGGAAGTGCAGC AAGCCTAACGTAGAGATGAGCGTGCAGCACGTGAAGTGTATGGAGGATGCTGCAGCGTTCGTTGCTCTTGCTGCTGCGGTGGATTTGAGTATGGATGCCT GCCGGCTATTCTCCCAAAGGCTGCGGAAGGAGCTGGTGTCGCCGGAGGAGAAGGAGATAGGTTGA
AA sequence Show only first row Show all	>Lus10032807 pacid=23164782 polypeptide=Lus10032807 locus=Lus10032807.g ID=Lus10032807.BGIv1.0 annot-version=v1.0 MDPCPFIRLTVGNLALKTPHASKPALSLIHPSSSPCFCKIKLNNFPLQTAAVPYIPSDDDSHPFSLAATFHLSKSDFDRLLAKSVFSSKLQLQISIYTGR CANNTCCLNSRNRLLGKVLVPLDLSGSDSRACVFHNGWISVGKEASKKESSSSSPSAQFHLNVKADPDPRFVFQFDGEPECSPQVFQIHGNIRQPVFTCK FSFRTPGDRNQRSRSFKLESSTGRKWLTRRGGEKQRPIKERKGWSITVHDLSGSPVAAASMVTPFVPSPGSDRVSRSNPGSWLILRPGGGAWEPWARLEA WRERGGSDGLGYRLEMIPDTSAAAAGIVLAESTLSSRRGGKFVVDLGGVNGCSSTPGSGNSPACSPRSSGDYGQWPYGGGAYRGGGFVMSSSVEGERKCS KPNVEMSVQHVKCMEDAAAFVALAAAVDLSMDACRLFSQRLRKELVSPEEKEIG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G10020			Protein of unknown function (D...		Lus10032807 [exp]	0	1
AT1G57680			unknown protein		Lus10008924 [exp]	2.0	0.8059
AT3G57400			unknown protein		Lus10018074 [exp]	3.0	0.8163
AT5G40150			Peroxidase superfamily protein...		Lus10039471 [exp]	4.7	0.8292
AT2G17230		EXL5	EXORDIUM like 5 (.1)		Lus10013834 [exp]	8.4	0.8212
AT1G01540			Protein kinase superfamily pro...		Lus10007919 [exp]	11.2	0.8035
AT1G13250		GATL3	galacturonosyltransferase-like...		Lus10034274 [exp]	11.2	0.8028
AT5G54400			S-adenosyl-L-methionine-depend...		Lus10038599 [exp]	12.3	0.7718
AT4G08150	HD	BP1, KNAT1	BREVIPEDICELLUS 1, BREVIPEDICE...		Lus10028244 [exp]	16.0	0.8013
					Lus10016421 [exp]	17.3	0.8021
AT4G01370		ATMPK4	MAP kinase 4 (.1)		Lus10036384 [exp]	19.1	0.7772

Compare expression of checked genes

Lus10032807 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.