Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G08170 458 / 2e-162 Inositol 1,3,4-trisphosphate 5/6-kinase family protein (.1.2.3) AT4G33770 362 / 4e-124 Inositol 1,3,4-trisphosphate 5/6-kinase family protein (.1.2) AT5G16760 228 / 1e-72 AtITPK1 inositol \(1,3,4\) P3 5/6-kinase 1, Arabidopsis thaliana inositol \(1,3,4\) P3 5/6-kinase 1, Inositol 1,3,4-trisphosphate 5/6-kinase family protein (.1) AT2G43980 74 / 2e-14 ATITPK4 "inositol 1,3,4-trisphosphate 5/6-kinase 4", inositol 1,3,4-trisphosphate 5/6-kinase 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007689 [exp] 649 / 0 AT4G08170 499 / 2e-178 Inositol 1,3,4-trisphosphate 5/6-kinase family protein (.1.2.3) Lus10035662 [exp] 425 / 2e-149 AT4G08170 455 / 2e-161 Inositol 1,3,4-trisphosphate 5/6-kinase family protein (.1.2.3) Lus10037247 [exp] 321 / 2e-109 AT4G08170 345 / 3e-119 Inositol 1,3,4-trisphosphate 5/6-kinase family protein (.1.2.3) Lus10020513 [exp] 321 / 2e-109 AT4G08170 331 / 2e-113 Inositol 1,3,4-trisphosphate 5/6-kinase family protein (.1.2.3) Lus10039098 [exp] 236 / 5e-73 AT5G55990 374 / 1e-128 calcineurin B-like protein 2 (.1) Lus10038765 [exp] 228 / 2e-72 AT5G16760 350 / 4e-121 inositol \(1,3,4\) P3 5/6-kinase 1, Arabidopsis thaliana inositol \(1,3,4\) P3 5/6-kinase 1, Inositol 1,3,4-trisphosphate 5/6-kinase family protein (.1) Lus10035811 [exp] 203 / 6e-63 AT5G16760 311 / 1e-105 inositol \(1,3,4\) P3 5/6-kinase 1, Arabidopsis thaliana inositol \(1,3,4\) P3 5/6-kinase 1, Inositol 1,3,4-trisphosphate 5/6-kinase family protein (.1) Lus10012447 [exp] 72 / 6e-16 AT4G08170 80 / 7e-20 Inositol 1,3,4-trisphosphate 5/6-kinase family protein (.1.2.3) Lus10033768 [exp] 68 / 2e-12 AT2G43980 395 / 4e-135 "inositol 1,3,4-trisphosphate 5/6-kinase 4", inositol 1,3,4-trisphosphate 5/6-kinase 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G149800 [exp] 527 / 0 AT4G08170 518 / 0.0 Inositol 1,3,4-trisphosphate 5/6-kinase family protein (.1.2.3) Potri.009G084600 [exp] 413 / 5e-145 AT4G08170 379 / 1e-131 Inositol 1,3,4-trisphosphate 5/6-kinase family protein (.1.2.3) Potri.001G140000 [exp] 255 / 1e-82 AT5G16760 372 / 6e-129 inositol \(1,3,4\) P3 5/6-kinase 1, Arabidopsis thaliana inositol \(1,3,4\) P3 5/6-kinase 1, Inositol 1,3,4-trisphosphate 5/6-kinase family protein (.1) Potri.003G094100 [exp] 253 / 5e-82 AT5G16760 373 / 2e-129 inositol \(1,3,4\) P3 5/6-kinase 1, Arabidopsis thaliana inositol \(1,3,4\) P3 5/6-kinase 1, Inositol 1,3,4-trisphosphate 5/6-kinase family protein (.1) Potri.019G047200 [exp] 216 / 1e-67 AT5G16760 332 / 1e-113 inositol \(1,3,4\) P3 5/6-kinase 1, Arabidopsis thaliana inositol \(1,3,4\) P3 5/6-kinase 1, Inositol 1,3,4-trisphosphate 5/6-kinase family protein (.1) Potri.017G007500 [exp] 74 / 2e-14 AT2G43980 534 / 0.0 "inositol 1,3,4-trisphosphate 5/6-kinase 4", inositol 1,3,4-trisphosphate 5/6-kinase 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0179 [flax] [poplar] ATP-grasp PF05770 [flax] [poplar] Ins134_P3_kin Inositol 1,3,4-trisphosphate 5/6-kinase ATP-grasp domain
Representative CDS sequence Show only first row Show all	>Lus10032808 pacid=23164792 polypeptide=Lus10032808 locus=Lus10032808.g ID=Lus10032808.BGIv1.0 annot-version=v1.0 ATGGGCCTGCAAGAGGAGATTGTGCCGCTCCAGAACGGAGGAGCCGGAGGAGCCTACGATGATAACCAAGTTGAAGAGCCCGTCATGGATGTCTCGCCTC TAGGGATTGGAATTCCTCTTCAGAAGAAATTCGTCGTTGTCGGTTACGCTCTTACTTCCAAGAAGATTAAGAGCTTTTTGCAGCCCAAACTTCAACGATT AGCTGGGAACAAAGGGATCTTATTTGTTGCAATTGATCAGAGCAAGCCACTTTCGGATCAAGGTCCTTTTGACATTGTGCTTCATAAGCTTACAGGGAGG GAGTGGAGACAGATTCTCGAGGATTACAGAAGAAGTCATCCAGAAGTTACAGTTCTTGATCCACCAGATGCAATTCAACATTTGCACAACCGCCAGTCCA TGCTTCAGTGTGTTGCAGACATGAACTTATGCAGCTCCTATGGAAAAGTTGACGTTCCAAGGCAGTTGGTTATTAAGAAGGATGCTTCATCCATTCCCGA TGCAGTTGCAAAAGCTGGGCTGATGCTCCCTATTGTTGCAAAACCGTTGGTTGCTGATGGGAGTGCAAAGTCGCATGAATTGTCCCTGGCGTATGATCAA TACTCGCTTCGAAAGCTTGAACCTCCTCTTGTTCTTCAGGAGTTCATTAACCATGGGGGTGTTCTTTTCAAAGTTTACATTGTTGGGGAAGCCATAAAGG TGGTAAGACGGTTTTCCTTACCTGATGTCTGTGAAAGAGAACTTGCCAACAGCGCTGGTGTTTGCCGCTTCCCTCGTGTTTCATGTGCTGCAGCTTCTGC AGATGAAGCCGATCTGGACCCTGTTATTGCTGAACTTCCACCGCGCCTCTTGCTGGAGAAACTTGGCAAAGAACTACGTCGCCGCCTGGGTCTTAGGCTG TTCAATCTGGATATTATACGGGAGCATGGCACTAGAGACCAGTTTTATGTCATTGACATTAACTACTTCCCAGGGTATGGGAAAGTGCCGGAATACGAAC ATATATTTACAGATTTCCTATTAGGCCTTGCTGAGAGTAAATACAAGAAGAAACCGTACCCGTGA
AA sequence Show only first row Show all	>Lus10032808 pacid=23164792 polypeptide=Lus10032808 locus=Lus10032808.g ID=Lus10032808.BGIv1.0 annot-version=v1.0 MGLQEEIVPLQNGGAGGAYDDNQVEEPVMDVSPLGIGIPLQKKFVVVGYALTSKKIKSFLQPKLQRLAGNKGILFVAIDQSKPLSDQGPFDIVLHKLTGR EWRQILEDYRRSHPEVTVLDPPDAIQHLHNRQSMLQCVADMNLCSSYGKVDVPRQLVIKKDASSIPDAVAKAGLMLPIVAKPLVADGSAKSHELSLAYDQ YSLRKLEPPLVLQEFINHGGVLFKVYIVGEAIKVVRRFSLPDVCERELANSAGVCRFPRVSCAAASADEADLDPVIAELPPRLLLEKLGKELRRRLGLRL FNLDIIREHGTRDQFYVIDINYFPGYGKVPEYEHIFTDFLLGLAESKYKKKPYP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G08170			Inositol 1,3,4-trisphosphate 5...		Lus10032808 [exp]	0	1
					Lus10022175 [exp]	8.1	0.7849
AT5G51990	AP2_ERF	CBF4, DREB1D	DEHYDRATION-RESPONSIVE ELEMENT...		Lus10027412 [exp]	8.2	0.8479
AT4G34410	AP2_ERF	RRTF1 (Redox Re...	redox responsive transcription...		Lus10014054 [exp]	13.3	0.8477
AT1G02010		SEC1A	secretory 1A (.1.2)		Lus10015870 [exp]	14.1	0.7421
AT1G12610	AP2_ERF	DDF1, DREB1F, F...	DWARF AND DELAYED FLOWERING 1,...		Lus10029602 [exp]	15.3	0.8429
AT1G30135	ZIM	TIFY5A, JAZ8	jasmonate-zim-domain protein 8...		Lus10023303 [exp]	16.9	0.8393
AT5G14610			DEAD box RNA helicase family p...		Lus10010718 [exp]	19.5	0.8088
					Lus10033246 [exp]	19.8	0.7014
AT3G54020		AtIPCS1	Arabidopsis Inositol phosphory...		Lus10035551 [exp]	24.6	0.8251
AT3G05500			Rubber elongation factor prote...		Lus10031493 [exp]	25.2	0.8049

Compare expression of checked genes

Lus10032808 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.