Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G74300 212 / 1e-68 alpha/beta-Hydrolases superfamily protein (.1) AT1G74280 198 / 8e-63 alpha/beta-Hydrolases superfamily protein (.1) AT3G48410 197 / 3e-62 alpha/beta-Hydrolases superfamily protein (.1) AT2G36290 192 / 2e-60 alpha/beta-Hydrolases superfamily protein (.1) AT1G74290 188 / 5e-59 alpha/beta-Hydrolases superfamily protein (.1) AT3G54240 185 / 7e-58 alpha/beta-Hydrolases superfamily protein (.1) AT5G22460 166 / 1e-50 alpha/beta-Hydrolases superfamily protein (.1.2) AT3G03240 132 / 9e-38 alpha/beta-Hydrolases superfamily protein (.1) AT1G08310 130 / 3e-37 alpha/beta-Hydrolases superfamily protein (.1.2) AT3G03230 128 / 4e-36 alpha/beta-Hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008968 [exp] 308 / 7e-106 AT2G36290 442 / 5e-156 alpha/beta-Hydrolases superfamily protein (.1) Lus10034148 [exp] 274 / 8e-93 AT2G36290 436 / 1e-153 alpha/beta-Hydrolases superfamily protein (.1) Lus10043437 [exp] 261 / 7e-88 AT2G36290 429 / 5e-151 alpha/beta-Hydrolases superfamily protein (.1) Lus10018549 [exp] 241 / 7e-80 AT2G36290 434 / 8e-153 alpha/beta-Hydrolases superfamily protein (.1) Lus10039775 [exp] 241 / 1e-79 AT2G36290 425 / 3e-149 alpha/beta-Hydrolases superfamily protein (.1) Lus10041666 [exp] 229 / 1e-73 AT2G36290 440 / 2e-153 alpha/beta-Hydrolases superfamily protein (.1) Lus10028860 [exp] 202 / 1e-64 AT2G36290 433 / 1e-152 alpha/beta-Hydrolases superfamily protein (.1) Lus10028853 [exp] 191 / 2e-63 AT1G74300 140 / 2e-41 alpha/beta-Hydrolases superfamily protein (.1) Lus10017051 [exp] 194 / 4e-61 AT3G48410 489 / 1e-173 alpha/beta-Hydrolases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G021400 [exp] 218 / 9e-71 AT2G36290 446 / 2e-157 alpha/beta-Hydrolases superfamily protein (.1) Potri.008G021200 [exp] 214 / 2e-69 AT2G36290 433 / 1e-152 alpha/beta-Hydrolases superfamily protein (.1) Potri.010G237700 [exp] 214 / 3e-69 AT2G36290 452 / 6e-160 alpha/beta-Hydrolases superfamily protein (.1) Potri.008G021000 [exp] 211 / 8e-68 AT2G36290 441 / 5e-155 alpha/beta-Hydrolases superfamily protein (.1) Potri.010G237800 [exp] 209 / 1e-67 AT2G36290 436 / 1e-153 alpha/beta-Hydrolases superfamily protein (.1) Potri.009G164900 [exp] 183 / 3e-57 AT5G22460 374 / 1e-129 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.004G203700 [exp] 165 / 2e-50 AT5G22460 434 / 2e-153 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.009G164600 [exp] 149 / 2e-44 AT3G44510 440 / 5e-156 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.016G086200 [exp] 93 / 2e-22 AT5G02970 653 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.006G131300 [exp] 90 / 4e-21 AT5G02970 658 / 0.0 alpha/beta-Hydrolases superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10032809 pacid=23164814 polypeptide=Lus10032809 locus=Lus10032809.g ID=Lus10032809.BGIv1.0 annot-version=v1.0 ATGTTACAAGAAGTTTCAACCGCAGTAGTGATCGGAATCAGCATCTTGACATGGATTCACCGATCTTTCCTCTGTCCACCTCCTCCCACGATCTGCGGCT CCCCCGGCGGACCTCCAGTCACCTCTCCCAGGATTAAGCTCAGGGACGGGCGCCACCTTGCATACAAAGAACATTGCGGTTTCCCCAACTTCAAAGTCAT ATTCATCCACGGATTCACCTCCAGCCATCTCGATCCCATGATCGCCACCTCCATCTCTCCGGAAGCAATAGAGGAGCTGAGAGTCTATGCGGTGACTTTC GACAGGCCGGGTTACGGCGAGAGCGACCCGGACCTGACCCGTACGCCGAAGAACTTGGCGCTAGATACTGAGGAACTGGCGGATCAATTAGTGTTTGGGG AGAAGTTCTACGTGATGGGAAAGTCAATGGGAGGGCAGGTGGTTTGGGGATGCTTGAAGTATATGCCACACAGGCTGGCCGAGGCGGCGTTGGTGGCGCT GGTGATCAATTACTTGTGCCAGAGTTTTCTGGATGAGGAAAGAGGCGCATAG
AA sequence Show only first row Show all	>Lus10032809 pacid=23164814 polypeptide=Lus10032809 locus=Lus10032809.g ID=Lus10032809.BGIv1.0 annot-version=v1.0 MLQEVSTAVVIGISILTWIHRSFLCPPPPTICGSPGGPPVTSPRIKLRDGRHLAYKEHCGFPNFKVIFIHGFTSSHLDPMIATSISPEAIEELRVYAVTF DRPGYGESDPDLTRTPKNLALDTEELADQLVFGEKFYVMGKSMGGQVVWGCLKYMPHRLAEAALVALVINYLCQSFLDEERGA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G74300			alpha/beta-Hydrolases superfam...		Lus10032809 [exp]	0	1
AT5G42180		PER64	peroxidase 64, Peroxidase supe...		Lus10017288 [exp]	5.2	0.8856
AT4G19420			Pectinacetylesterase family pr...		Lus10033305 [exp]	5.5	0.8718
AT4G34490		ATCAP1	cyclase associated protein 1 (...		Lus10040460 [exp]	11.3	0.8384
AT2G39530			Uncharacterised protein family...		Lus10031874 [exp]	12.0	0.8318
AT1G15360	AP2_ERF	WIN1, SHN1	WAX INDUCER 1, SHINE 1, Integr...		Lus10030097 [exp]	12.1	0.8607
AT1G12450			SNARE associated Golgi protein...		Lus10008915 [exp]	12.4	0.7668
AT1G05260		RCI3A, RCI3	RARE COLD INDUCIBLE GENE 3, Pe...		Lus10031548 [exp]	13.0	0.8600
AT3G14920			Peptide-N4-(N-acetyl-beta-gluc...		Lus10025771 [exp]	13.9	0.8508
AT5G20860			Plant invertase/pectin methyle...		Lus10017665 [exp]	16.0	0.8534
AT4G02300			Plant invertase/pectin methyle...		Lus10001466 [exp]	20.1	0.8416

Compare expression of checked genes

Lus10032809 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.