Gene [FLAX] | FIBexDB

Lus10032810 [FLAX]

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JGI Phytozome v13

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Symbol

Arabidopsis homologues

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No hit found

Paralogs

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Gene ID	BLAST score/e-value	At best hit	BLAST score/e-value	TAIR10 short description
Lus10010839 [exp]	168 / 2e-51	AT3G30200	47 / 9e-06	Plant transposase (Ptta/En/Spm family) (.1)
Lus10034588 [exp]	110 / 5e-30	ND	/
Lus10002537 [exp]	97 / 4e-23	AT1G09640	634 / 0.0	Translation elongation factor EF1B, gamma chain (.1.2)
Lus10042521 [exp]	63 / 6e-13	ND	/
Lus10016838 [exp]	65 / 8e-13	AT2G24960	71 / 4e-14	unknown protein
Lus10005359 [exp]	62 / 4e-12	ND	41 / 1e-04
Lus10006003 [exp]	57 / 1e-09	ND	/
Lus10017843 [exp]	54 / 2e-09	ND	/
Lus10024976 [exp]	50 / 3e-07	AT1G40087	91 / 5e-20	Plant transposase (Ptta/En/Spm family) (.1)

Poplar homologues

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No hit found

PFAM info

Clan ID	Clan name	Pfam ID	Pfam name	Pfam description
		PF03004 [flax] [poplar]	Transposase_24	Plant transposase (Ptta/En/Spm family)

Representative CDS sequence

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>Lus10032810 pacid=23164832 polypeptide=Lus10032810 locus=Lus10032810.g ID=Lus10032810.BGIv1.0 annot-version=v1.0

ATGGATGAAGAGAAGAAGAACAAGAAAAATAACGAGAAGCAAAAGAGGAACAACGCAGGTGGGTCTAGGCCAAACGCTCGTTACTATGAAGAGCTTTTTG

AAAAGACTGGCGTAGTACCTTCTCGAGGAGAGGTATGGAGGCGAGTTAACCAGAGGGTGGATGGAAGTTGGGAAAGTTCACATGCTGAAGCAATAGCAGT

GTGTATAATTACCCATGGGATTCCTCGACAAGATGGGTATGGTGATTCTCTGGATTTGGCACATTGTGATCTAGATCCGGACTATAAAGGAGAGCATTTT

AGGAGAGTGATGACTAAGGGTACATCTGTTACCCCATCACAGCTAAATTACAATACCTTAAGTAGTAGAGTTTCTGGTGCCACTTCTCATGTACACACAC

GGTTGATGGTCATCCAGAATATGAAGACGCACTTTGTCGCATGCAGGAAGAGTGGCTTCAGACGGAGGGTGCAAGAGGCTAAGTGGAGTAAGAGGGAGGT

TGAATGGGCACAACTGTATGCTCAGTTGGAGAACAAGCCATATCTTATCTTAGGCGATGATTTTGAATTTAAAGAAAAGGAGATGCAAGAAGAGGAATTA

GATTAA

AA sequence

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>Lus10032810 pacid=23164832 polypeptide=Lus10032810 locus=Lus10032810.g ID=Lus10032810.BGIv1.0 annot-version=v1.0

MDEEKKNKKNNEKQKRNNAGGSRPNARYYEELFEKTGVVPSRGEVWRRVNQRVDGSWESSHAEAIAVCIITHGIPRQDGYGDSLDLAHCDLDPDYKGEHF

RRVMTKGTSVTPSQLNYNTLSSRVSGATSHVHTRLMVIQNMKTHFVACRKSGFRRRVQEAKWSKREVEWAQLYAQLENKPYLILGDDFEFKEKEMQEEEL

DESeq2's median of ratios [FLAX]

Coexpressed genes

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Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10032810 [exp]	0	1

Lus10032810 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.