Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026462 [exp] 141 / 4e-42 ND / Lus10033180 [exp] 133 / 1e-38 ND / Lus10005026 [exp] 129 / 1e-38 ND / Lus10018996 [exp] 115 / 2e-32 ND / Lus10039950 [exp] 97 / 1e-26 ND / Lus10022156 [exp] 97 / 1e-25 ND / Lus10017842 [exp] 93 / 8e-25 ND / Lus10005607 [exp] 92 / 2e-23 ND 38 / 0.003 Lus10043004 [exp] 79 / 7e-18 ND 47 / 8e-06
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10032814 pacid=23164856 polypeptide=Lus10032814 locus=Lus10032814.g ID=Lus10032814.BGIv1.0 annot-version=v1.0 ATGACATACCACATGAAGTTTGGGGAGGTTGAGGTTATAACCCCTGAGGGCGGTAGGGAGAGGAGATCTGTTGCTAGTGCATGGATGCTTATCCTTGATC ATGTAATGAGGATGATCATGCCATTTGAAAATAAATTGCCAAGTGGAACCGATCTAGTTGGACTTTTTTGCCAGTTCCTCGGGATGATTGCACAGGAGCA TAACATTCTTCCTGTGCAATATGATGGATGGCCAAATATGCGTGACACACAAAAGGCAGCGACTCTGGTGGCGGTGATGAGGGAAAGAATCGGTCAAGCA CCAAATAGGGGTGAGTTGTATGCTCGAACTCACACGAATAAATCTGAGCTATATACTGATCCACAAGGGCATGCGGCCCCTAATGATTCGCTTGGCCATG TCAAAGGAGCCGAGCTTAGTGGCCGAGTACGAGGAGTAGCATATGGAGTTGGAATAAGTACGAAGGGTTAA
AA sequence Show only first row Show all	>Lus10032814 pacid=23164856 polypeptide=Lus10032814 locus=Lus10032814.g ID=Lus10032814.BGIv1.0 annot-version=v1.0 MTYHMKFGEVEVITPEGGRERRSVASAWMLILDHVMRMIMPFENKLPSGTDLVGLFCQFLGMIAQEHNILPVQYDGWPNMRDTQKAATLVAVMRERIGQA PNRGELYARTHTNKSELYTDPQGHAAPNDSLGHVKGAELSGRVRGVAYGVGISTKG

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10032814 [exp]	0	1
AT2G36190		ATCWINV4	cell wall invertase 4 (.1)		Lus10014217 [exp]	3.3	1.0000
AT3G16857	GARP	ARR1	response regulator 1 (.1.2)		Lus10039345 [exp]	4.9	1.0000
AT5G14760		AO	L-aspartate oxidase (.1)		Lus10018901 [exp]	6.0	1.0000
AT5G67360		ARA12	Subtilase family protein (.1)		Lus10027891 [exp]	6.3	1.0000
AT2G21540		ATSFH3	SEC14-like 3 (.1.2.3)		Lus10040432 [exp]	9.7	1.0000
					Lus10002313 [exp]	9.9	1.0000
AT5G56790			Protein kinase superfamily pro...		Lus10000773 [exp]	11.2	1.0000
					Lus10023520 [exp]	12.7	1.0000
AT5G49900			Beta-glucosidase, GBA2 type fa...		Lus10023340 [exp]	13.0	1.0000
					Lus10013658 [exp]	13.0	1.0000

Compare expression of checked genes

Lus10032814 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.