Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G09960 653 / 0 ATSUC4, SUC4, ATSUT4, SUT4 sucrose transporter 4 (.1) AT1G22710 475 / 4e-164 SUT1, ATSUC2, SUC2 SUCROSE TRANSPORTER 1, ARABIDOPSIS THALIANA SUCROSE-PROTON SYMPORTER 2, sucrose-proton symporter 2 (.1) AT1G71880 464 / 7e-160 ATSUC1, SUC1 ARABIDOPSIS THALIANA SUCROSE-PROTON SYMPORTER 1, sucrose-proton symporter 1 (.1) AT5G06170 461 / 7e-159 ATSUC9 sucrose-proton symporter 9 (.1) AT1G66570 461 / 8e-159 ATSUC7 sucrose-proton symporter 7 (.1.2.3) AT2G14670 456 / 4e-157 ATSUC8 sucrose-proton symporter 8 (.1) AT5G43610 452 / 2e-155 ATSUC6 sucrose-proton symporter 6 (.1) AT1G71890 451 / 9e-155 SUC5, ATSUC5 SUCROSE-PROTON SYMPORTER 5, Major facilitator superfamily protein (.1) AT2G02860 413 / 6e-139 ATSUT2, ATSUC3, SUT2 ARABIDOPSIS THALIANA SUCROSE TRANSPORTER 3, sucrose transporter 2 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007691 [exp] 541 / 0 AT1G09960 425 / 1e-147 sucrose transporter 4 (.1) Lus10017910 [exp] 460 / 4e-158 AT1G71890 693 / 0.0 SUCROSE-PROTON SYMPORTER 5, Major facilitator superfamily protein (.1) Lus10029766 [exp] 444 / 2e-151 AT1G22710 655 / 0.0 SUCROSE TRANSPORTER 1, ARABIDOPSIS THALIANA SUCROSE-PROTON SYMPORTER 2, sucrose-proton symporter 2 (.1) Lus10018915 [exp] 442 / 6e-151 AT1G71890 616 / 0.0 SUCROSE-PROTON SYMPORTER 5, Major facilitator superfamily protein (.1) Lus10028614 [exp] 440 / 2e-150 AT1G71890 603 / 0.0 SUCROSE-PROTON SYMPORTER 5, Major facilitator superfamily protein (.1) Lus10028616 [exp] 438 / 2e-149 AT1G71890 617 / 0.0 SUCROSE-PROTON SYMPORTER 5, Major facilitator superfamily protein (.1) Lus10018914 [exp] 431 / 8e-147 AT1G71890 593 / 0.0 SUCROSE-PROTON SYMPORTER 5, Major facilitator superfamily protein (.1) Lus10007702 [exp] 426 / 3e-145 AT1G22710 588 / 0.0 SUCROSE TRANSPORTER 1, ARABIDOPSIS THALIANA SUCROSE-PROTON SYMPORTER 2, sucrose-proton symporter 2 (.1) Lus10012844 [exp] 378 / 2e-124 AT2G02860 696 / 0.0 ARABIDOPSIS THALIANA SUCROSE TRANSPORTER 3, sucrose transporter 2 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G106900 [exp] 734 / 0 AT1G09960 674 / 0.0 sucrose transporter 4 (.1) Potri.019G085800 [exp] 466 / 2e-160 AT1G22710 645 / 0.0 SUCROSE TRANSPORTER 1, ARABIDOPSIS THALIANA SUCROSE-PROTON SYMPORTER 2, sucrose-proton symporter 2 (.1) Potri.013G115200 [exp] 455 / 4e-156 AT1G22710 643 / 0.0 SUCROSE TRANSPORTER 1, ARABIDOPSIS THALIANA SUCROSE-PROTON SYMPORTER 2, sucrose-proton symporter 2 (.1) Potri.010G093600 [exp] 239 / 1e-71 AT2G02860 816 / 0.0 ARABIDOPSIS THALIANA SUCROSE TRANSPORTER 3, sucrose transporter 2 (.1.2) Potri.008G148100 [exp] 238 / 4e-71 AT2G02860 849 / 0.0 ARABIDOPSIS THALIANA SUCROSE TRANSPORTER 3, sucrose transporter 2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [flax] [poplar] MFS PF07690 [flax] [poplar] MFS_1 Major Facilitator Superfamily
Representative CDS sequence Show only first row Show all	>Lus10032815 pacid=23164819 polypeptide=Lus10032815 locus=Lus10032815.g ID=Lus10032815.BGIv1.0 annot-version=v1.0 ATGCCAATCAATGAAGCAGAGACGCAAAGGGCCGCCAACAGGTCACGCCGCGATTCAAGGCAGCCGGCAGGTCGGCCGGCTGTGGCGGTGGCGAAGCGAG TTCCGTTACGGCTGCTGCTGCAAGTAACGTCGATCGCTGGCGGGATTCAATTCGGATGGGCTCTTCAGCTCTCTCTCTTAACTCCCTACGTGCAGGAGCT GGGAATCCCGCACGCTTGGGCAAGTGTGATTTGGCTGTGCGGGCCACTGTCTGGTCTGATAGTACAGCCTCTGGTAGGGCATATGAGCGATCGTTGCACG AGTCGATTCGGCCGGCGGAGGCCGTTCATCGCCGTTGGGACACTGCTGATATCATTCGCCGTCTTGATCATCGGTCACTCTGCAGATATCGGGTGGTTAC TCGGGGACAGAGGCGATTTTCGGCCGAGGGCGATTGGGACTTTCGTTTTCGGGTTCTGGATTCTCGATGTGGCCAATAACATGACCCAGGGTCCGTGCAG AGCTCTTCTTGCTGATATGACCGGCAAGGACCATCGAAGGACTCGAGTGGCAAATGCTTATTTCTCTTTGTTCATGGCTGTTGGCAATATCCTTGGCTTT GCTACTGGAGCTTTTAGTGGTTGGTACAAAATTTTTCCGTTCACTCTTACAACTGCATGTGACGTGGACTGTGCCAACCTTAAAGCTGCTTTCTATCTTG ATGTTATCTGTATTGTAATCACCGCATATATCAGTATTTCATCAGCTAAAGAACCGTCTATAAGCTTGCTTCATGCATCTACTCCTGTTGCTGAAGAAGC AGCAGTTGAGTCCAGCCCTGTAGAAGAGGCTTTCCTCTGGGAGCTTTTCGGTACTTTCAGATATTTCCCAGCATCCGTGTGGACTATATTGCTTGTTACT GCTCTAAATTGGATCGGTTGGTTTCCGTTTCTACTCTTTGATACTGACTGGATGGGGCGAGAAATCTATGGCGGTGACCCAGATGGAGGACTAAGTTATA GTTCTGGAGTGAGAATGGGAGCGTTTGCTCTTATGTTAAACTCCGTGCTTTTAGGAATAACGTCAGTACTGATGGAGAAGATCTGCAGGAAGTGGGGAGC TGGCTTCATTTGGGGACTCTCTAACATCTTCATGGCTATCTGCTTCCTTTCAATGCTTATAATTGCCTATGTAGCATACCATATGGGCTATCTGGGTCAT GGTGAACCACCAGTTGGTATTCTTGTTGCTGCGCTGACTGTTTTTGCATTCCTTGGGATTCCATTGGCAATCACCTATAGTGTTCCATATGCCTTAGTGT CCTCGCGAATTGAGCCTTTGGGGCTTGGCCAAGGGTTATCGATGGGTGTATTGAATTTGGCAATTGTCGTCCCGCAGGTGTTGGTGTCCGTGGGATCTGG TCCGTGGGATGAATTGTTTGGAGGTGGAAACTCACCAGCCATAGCTGTGGGAGGTTTGGCAGCTCTAGTAGGTGGGGTGATCGCTATATTGGGGATTCCA CGTTTCACTGCTCAAAAGCCAAGGCTTCTTCCATGA
AA sequence Show only first row Show all	>Lus10032815 pacid=23164819 polypeptide=Lus10032815 locus=Lus10032815.g ID=Lus10032815.BGIv1.0 annot-version=v1.0 MPINEAETQRAANRSRRDSRQPAGRPAVAVAKRVPLRLLLQVTSIAGGIQFGWALQLSLLTPYVQELGIPHAWASVIWLCGPLSGLIVQPLVGHMSDRCT SRFGRRRPFIAVGTLLISFAVLIIGHSADIGWLLGDRGDFRPRAIGTFVFGFWILDVANNMTQGPCRALLADMTGKDHRRTRVANAYFSLFMAVGNILGF ATGAFSGWYKIFPFTLTTACDVDCANLKAAFYLDVICIVITAYISISSAKEPSISLLHASTPVAEEAAVESSPVEEAFLWELFGTFRYFPASVWTILLVT ALNWIGWFPFLLFDTDWMGREIYGGDPDGGLSYSSGVRMGAFALMLNSVLLGITSVLMEKICRKWGAGFIWGLSNIFMAICFLSMLIIAYVAYHMGYLGH GEPPVGILVAALTVFAFLGIPLAITYSVPYALVSSRIEPLGLGQGLSMGVLNLAIVVPQVLVSVGSGPWDELFGGGNSPAIAVGGLAALVGGVIAILGIP RFTAQKPRLLP

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G09960		ATSUC4, SUC4, A...	sucrose transporter 4 (.1)		Lus10032815 [exp]	0	1
AT1G09960		ATSUC4, SUC4, A...	sucrose transporter 4 (.1)		Lus10007691 [exp]	1.0	0.9560
AT1G70230		AXY4, TBL27	ALTERED XYLOGLUCAN 4, TRICHOME...		Lus10029188 [exp]	1.4	0.8990
AT4G12300		CYP706A4	"cytochrome P450, family 706, ...		Lus10032223 [exp]	3.5	0.8875
AT5G15890		TBL21	TRICHOME BIREFRINGENCE-LIKE 21...		Lus10034087 [exp]	5.9	0.8450
AT3G09770		LOG2	LOSS OF GDU 2, RING/U-box supe...		Lus10023182 [exp]	7.5	0.8578
AT5G08530		CI51	51 kDa subunit of complex I (....		Lus10015807 [exp]	7.7	0.8457
AT5G15900		TBL19	TRICHOME BIREFRINGENCE-LIKE 19...		Lus10003061 [exp]	8.9	0.8407
AT3G11690			unknown protein		Lus10029349 [exp]	11.0	0.7369
AT4G18700		ATWL4, CIPK12, ...	SNF1-RELATED PROTEIN KINASE 3....		Lus10007284 [exp]	11.4	0.8464
AT5G16550			unknown protein		Lus10033497 [exp]	12.0	0.7783

Compare expression of checked genes

Lus10032815 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.