Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G64460 386 / 2e-136 Phosphoglycerate mutase family protein (.1.2.3.4.5.6.7.8) AT1G58280 374 / 2e-131 Phosphoglycerate mutase family protein (.1.2.3.4) AT2G17280 356 / 1e-124 Phosphoglycerate mutase family protein (.1.2) AT1G09935 255 / 1e-85 Phosphoglycerate mutase family protein (.1) AT1G09932 199 / 3e-63 Phosphoglycerate mutase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020467 [exp] 359 / 8e-126 AT5G64460 435 / 1e-155 Phosphoglycerate mutase family protein (.1.2.3.4.5.6.7.8) Lus10007093 [exp] 357 / 4e-125 AT5G64460 422 / 8e-151 Phosphoglycerate mutase family protein (.1.2.3.4.5.6.7.8) Lus10032821 [exp] 313 / 2e-107 AT1G58280 320 / 4e-110 Phosphoglycerate mutase family protein (.1.2.3.4) Lus10032820 [exp] 232 / 1e-76 AT2G17280 233 / 7e-77 Phosphoglycerate mutase family protein (.1.2) Lus10001381 [exp] 62 / 6e-12 AT2G17280 74 / 3e-17 Phosphoglycerate mutase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G108500 [exp] 426 / 4e-151 AT5G64460 412 / 2e-145 Phosphoglycerate mutase family protein (.1.2.3.4.5.6.7.8) Potri.009G080300 [exp] 395 / 7e-140 AT5G64460 449 / 5e-161 Phosphoglycerate mutase family protein (.1.2.3.4.5.6.7.8) Potri.001G286000 [exp] 381 / 2e-134 AT5G64460 438 / 9e-157 Phosphoglycerate mutase family protein (.1.2.3.4.5.6.7.8) Potri.002G108600 [exp] 284 / 7e-97 AT5G64460 298 / 3e-102 Phosphoglycerate mutase family protein (.1.2.3.4.5.6.7.8)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0071 [flax] [poplar] His_phosphatase PF00300 [flax] [poplar] His_Phos_1 Histidine phosphatase superfamily (branch 1)
Representative CDS sequence Show only first row Show all	>Lus10032819 pacid=23164779 polypeptide=Lus10032819 locus=Lus10032819.g ID=Lus10032819.BGIv1.0 annot-version=v1.0 ATGGAGGCCCAGCCGGCCATGGCTCTATACCCATTGCACCGTACTAAGACCATTCACCTGGTGAGGCACGCACAAGGAGTACACAATGTAGAAGGTGGAA AAGATTACAGTATGTACATGTCTGAAGATCTCTTTGACGCTAGGCTTACTGACCTTGGTTGGCAACAGGTTGAAAATCTGCGCAAACATGTCCGAAGCAT TGGACTCGACAAGAAGATTGAATTGGTTGTTGTTTCCCCACTGTTAAGGACAATGCAAACAGCAGTTGGAGTCTTTGGAGGAGATAGGTATACTGATGGT GTACCATTGATGGTGGAGCATGCTGGCGAAAGTGACCATCCTTCTATTTCTAGTTTTGATTGCCCACCTTTTCTGGCAGTAGAACTATGTCGAGAACATT TGGGAGTCCATCCTTGTGATAGGAGAAGAAGCATTCCGGATTACCAGCCTTTGTTTCCTGCAATTGATTTTTCACTGATCCAGAACAATGCTGATGAGTT GTGGAAAGCTGACATCCGTGAGAAGGATGAAGAAGTTGCAGCTAGAGGGCTTCAGTTCTTTAACTGGCTATGGACTCGAAAAGAGAAGGAGATAGCAGTT GTTAGCCACAGTGGGTTCTTGTATCATGCATTGAGCCATTTTGGAAATGATTGTGATCCTACAATCAAAAGTGAGATATGTACACATTTTGCTAACTGCG AGCTTCGGTCCGTGGTAATTGTTGATAGATGTATGATAGGCTCAGTTTTGTCGACAACTAACTATTCTGGAAAAAGTCCCGACGGGGTTGATCAACCAAG TGATGCGGATGAACAGCAGCTTCCGTAG
AA sequence Show only first row Show all	>Lus10032819 pacid=23164779 polypeptide=Lus10032819 locus=Lus10032819.g ID=Lus10032819.BGIv1.0 annot-version=v1.0 MEAQPAMALYPLHRTKTIHLVRHAQGVHNVEGGKDYSMYMSEDLFDARLTDLGWQQVENLRKHVRSIGLDKKIELVVVSPLLRTMQTAVGVFGGDRYTDG VPLMVEHAGESDHPSISSFDCPPFLAVELCREHLGVHPCDRRRSIPDYQPLFPAIDFSLIQNNADELWKADIREKDEEVAARGLQFFNWLWTRKEKEIAV VSHSGFLYHALSHFGNDCDPTIKSEICTHFANCELRSVVIVDRCMIGSVLSTTNYSGKSPDGVDQPSDADEQQLP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G64460			Phosphoglycerate mutase family...		Lus10032819 [exp]	0	1
AT4G27630		GTG2	GPCR-type G protein 2 (.1.2.3)		Lus10020351 [exp]	3.0	0.8250
AT4G39220		ATRER1A	Rer1 family protein (.1)		Lus10041765 [exp]	4.5	0.7970
AT3G51460		rhd4	ROOT HAIR DEFECTIVE4, Phosphoi...		Lus10035993 [exp]	4.9	0.8006
AT1G15690		FUGU5, AtVHP1;1...	FUGU 5, ARABIDOPSIS THALIANA V...		Lus10008044 [exp]	5.5	0.7888
AT1G61900			unknown protein		Lus10006773 [exp]	6.7	0.8002
AT5G64440		ATFAAH	fatty acid amide hydrolase (.1...		Lus10007094 [exp]	7.9	0.7835
AT1G54220			Dihydrolipoamide acetyltransfe...		Lus10006877 [exp]	9.8	0.7801
AT3G19340			Protein of unknown function (D...		Lus10041512 [exp]	13.1	0.7708
AT2G16365			F-box family protein (.1.2.3.4...		Lus10040438 [exp]	13.9	0.7441
AT5G09230		AtSRT2, SRT2	sirtuin 2 (.1.2.3.4.5.6.7)		Lus10029531 [exp]	17.8	0.7878

Compare expression of checked genes

Lus10032819 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.