Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G64460 233 / 5e-77 Phosphoglycerate mutase family protein (.1.2.3.4.5.6.7.8) AT2G17280 232 / 8e-77 Phosphoglycerate mutase family protein (.1.2) AT1G58280 229 / 2e-75 Phosphoglycerate mutase family protein (.1.2.3.4) AT1G09935 225 / 2e-74 Phosphoglycerate mutase family protein (.1) AT1G09932 210 / 3e-68 Phosphoglycerate mutase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007093 [exp] 245 / 7e-82 AT5G64460 422 / 8e-151 Phosphoglycerate mutase family protein (.1.2.3.4.5.6.7.8) Lus10020467 [exp] 242 / 3e-80 AT5G64460 435 / 1e-155 Phosphoglycerate mutase family protein (.1.2.3.4.5.6.7.8) Lus10032821 [exp] 234 / 2e-77 AT1G58280 320 / 4e-110 Phosphoglycerate mutase family protein (.1.2.3.4) Lus10032819 [exp] 232 / 9e-77 AT5G64460 386 / 2e-136 Phosphoglycerate mutase family protein (.1.2.3.4.5.6.7.8) Lus10001381 [exp] 48 / 3e-07 AT2G17280 74 / 3e-17 Phosphoglycerate mutase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G108600 [exp] 285 / 7e-98 AT5G64460 298 / 3e-102 Phosphoglycerate mutase family protein (.1.2.3.4.5.6.7.8) Potri.002G108500 [exp] 242 / 1e-79 AT5G64460 412 / 2e-145 Phosphoglycerate mutase family protein (.1.2.3.4.5.6.7.8) Potri.009G080300 [exp] 234 / 2e-77 AT5G64460 449 / 5e-161 Phosphoglycerate mutase family protein (.1.2.3.4.5.6.7.8) Potri.001G286000 [exp] 232 / 1e-76 AT5G64460 438 / 9e-157 Phosphoglycerate mutase family protein (.1.2.3.4.5.6.7.8)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0071 [flax] [poplar] His_phosphatase PF00300 [flax] [poplar] His_Phos_1 Histidine phosphatase superfamily (branch 1)
Representative CDS sequence Show only first row Show all	>Lus10032820 pacid=23164853 polypeptide=Lus10032820 locus=Lus10032820.g ID=Lus10032820.BGIv1.0 annot-version=v1.0 ATGGGCGACGCAACAGAAGAAAACATCAAGATTCTTCATCTGGTTAGGCATGCACAAGGTGTACACAATGTTGCAGGAGCTCAAGATCATAGCGCTTTGA TGTCTCCTCAATATTTTGATGCTCACCTATCCCCTCTTGGATCCCACCAGGTTCAAGATTTACGGAGCCATGTGGTTTCATCTGGGCTGCTTCCAAGAAT TCAATTAGTCATCACATCTCCTCTCTCCAGGACAATGCAAACTGCAGTCAAGGTGTTCGATTCGATGCCCAAAAGAGAAGAGCATCAGGAGACGTTGAAT GTCAAATTCCCACCGATTTTAGCACATGAGCTTTGTCGGGAAAGATTGGGGCTTCATCCTTGTGACAAGAGGAGGACTGTGACAGAGTATCGGTCTCTTT TCCCTGACGTTGAAAGTGATGAGGATATTATGTGGAAACCTGATGCTAGGGAGACCTTTGAAGAGGTTGCCAACAGGGGCTTGAAGTTCATGAACTGGTT ATGGACACGTCCGGAGAAGGAAATCGCAATTGTTTGTCATGACAGGTTCTTGCAGTATACCTTAGAGGCTTTGACAAATGACTGCCAGCCTAGTTTGAGG AGTGAAGTAGCTACCAAATTCAAGAATTGTGAACTTCGTTCTCTGGCCATTGAGAATGAAAGGTAA
AA sequence Show only first row Show all	>Lus10032820 pacid=23164853 polypeptide=Lus10032820 locus=Lus10032820.g ID=Lus10032820.BGIv1.0 annot-version=v1.0 MGDATEENIKILHLVRHAQGVHNVAGAQDHSALMSPQYFDAHLSPLGSHQVQDLRSHVVSSGLLPRIQLVITSPLSRTMQTAVKVFDSMPKREEHQETLN VKFPPILAHELCRERLGLHPCDKRRTVTEYRSLFPDVESDEDIMWKPDARETFEEVANRGLKFMNWLWTRPEKEIAIVCHDRFLQYTLEALTNDCQPSLR SEVATKFKNCELRSLAIENER

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G17280			Phosphoglycerate mutase family...		Lus10032820 [exp]	0	1
AT5G58520			Protein kinase superfamily pro...		Lus10031294 [exp]	2.0	0.6933
					Lus10002077 [exp]	3.0	0.6543
AT3G63150		ATCBG, MIRO2	CALCIUM BINDING GTP-ASE, MIRO-...		Lus10022034 [exp]	3.0	0.7208
					Lus10024018 [exp]	8.0	0.6363
					Lus10031082 [exp]	9.0	0.6078
					Lus10032489 [exp]	10.2	0.6392
AT2G39210			Major facilitator superfamily ...		Lus10038682 [exp]	11.3	0.6058
AT3G05740		RECQI1	RECQ helicase l1 (.1)		Lus10042451 [exp]	11.3	0.6725
AT4G17920			RING/U-box superfamily protein...		Lus10004572 [exp]	12.8	0.6790
AT1G11390			Protein kinase superfamily pro...		Lus10002591 [exp]	13.4	0.6687

Compare expression of checked genes

Lus10032820 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.