Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G58280 278 / 1e-93 Phosphoglycerate mutase family protein (.1.2.3.4) AT2G17280 273 / 6e-92 Phosphoglycerate mutase family protein (.1.2) AT5G64460 265 / 1e-88 Phosphoglycerate mutase family protein (.1.2.3.4.5.6.7.8) AT1G09935 205 / 6e-66 Phosphoglycerate mutase family protein (.1) AT1G09932 183 / 1e-56 Phosphoglycerate mutase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032819 [exp] 270 / 8e-91 AT5G64460 386 / 2e-136 Phosphoglycerate mutase family protein (.1.2.3.4.5.6.7.8) Lus10020467 [exp] 266 / 9e-89 AT5G64460 435 / 1e-155 Phosphoglycerate mutase family protein (.1.2.3.4.5.6.7.8) Lus10007093 [exp] 265 / 1e-88 AT5G64460 422 / 8e-151 Phosphoglycerate mutase family protein (.1.2.3.4.5.6.7.8) Lus10032820 [exp] 223 / 1e-72 AT2G17280 233 / 7e-77 Phosphoglycerate mutase family protein (.1.2) Lus10001381 [exp] 90 / 2e-22 AT2G17280 74 / 3e-17 Phosphoglycerate mutase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G108500 [exp] 302 / 2e-102 AT5G64460 412 / 2e-145 Phosphoglycerate mutase family protein (.1.2.3.4.5.6.7.8) Potri.009G080300 [exp] 280 / 1e-94 AT5G64460 449 / 5e-161 Phosphoglycerate mutase family protein (.1.2.3.4.5.6.7.8) Potri.001G286000 [exp] 277 / 2e-93 AT5G64460 438 / 9e-157 Phosphoglycerate mutase family protein (.1.2.3.4.5.6.7.8) Potri.002G108600 [exp] 231 / 6e-76 AT5G64460 298 / 3e-102 Phosphoglycerate mutase family protein (.1.2.3.4.5.6.7.8)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0071 [flax] [poplar] His_phosphatase PF00300 [flax] [poplar] His_Phos_1 Histidine phosphatase superfamily (branch 1)
Representative CDS sequence Show only first row Show all	>Lus10032821 pacid=23164840 polypeptide=Lus10032821 locus=Lus10032821.g ID=Lus10032821.BGIv1.0 annot-version=v1.0 ATGGATGCAAGAGGCAGTGGCAGTCCAAAAACAACTCTGTATCCATTACACCGCACGAAAGTTCTTCATTTGATTAGGCACGCACAAGGGATCCATAACC TTGAAGGAGAGAAAGACCCATCTGCTTATTTCTCCCCAAAGCTCTTTGACGCGCATCTCACTCCACTCGGATGGCAGCAGGTGGCTCATCTCAGAACCCA CATTCTTCAATCTGGCCTCCGTCACACCATTCAATTGGTCGTCACTTCCCCGCTGCTTAGGGCTATGCAAACTGCTGTTGGGGTGTTTGGAGGAGGTGTA GATGAAGTAGTCGACTCAAGTACTAATCCTCCATTGATGGTTGCTAATGCTGGGAATAGCTCTTCCCCTCCTATTTCTAGCTTCAACTCTCCTCCATTTG TCGCAACCGAGCTCTGCAGGGAACATTTGAGCCTTCATCCATGTGACTGGAGAAGTAGCATTAGCACCTACCGCTCCCTTTTTCCTGCTATCGAAAGCGA TGAAGACACATTGGTTAAGCCTGGTCAGAGAGAGACATTTGAACAAGTTGCAGCCAGAGCACTGCAATTCTTGAAATGGATTTGGACTAGGAAAGAGAAG GAGATTGCAGTTGTTAGCCATGGGGGTTTCCTGCATGACATGCTGAGTCTGTTTGGAAATGACTGTCATCCAAGTGTCAAAAATGAAATTGGTACCAGAT TTGCCAATTGTCAGCTTCTTTCAATAGTTTTGGTGGACAGAGGCATTATTGGTTCAGATCCTCCAATCACAAATTATCCTGTAGGAGTTGAGGTCCCAAA GAACATTCATGGCGATAAAGAAGAGACTACTGCGCCAGCATAG
AA sequence Show only first row Show all	>Lus10032821 pacid=23164840 polypeptide=Lus10032821 locus=Lus10032821.g ID=Lus10032821.BGIv1.0 annot-version=v1.0 MDARGSGSPKTTLYPLHRTKVLHLIRHAQGIHNLEGEKDPSAYFSPKLFDAHLTPLGWQQVAHLRTHILQSGLRHTIQLVVTSPLLRAMQTAVGVFGGGV DEVVDSSTNPPLMVANAGNSSSPPISSFNSPPFVATELCREHLSLHPCDWRSSISTYRSLFPAIESDEDTLVKPGQRETFEQVAARALQFLKWIWTRKEK EIAVVSHGGFLHDMLSLFGNDCHPSVKNEIGTRFANCQLLSIVLVDRGIIGSDPPITNYPVGVEVPKNIHGDKEETTAPA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G58280			Phosphoglycerate mutase family...		Lus10032821 [exp]	0	1
AT1G50000			methyltransferases (.1.2)		Lus10035666 [exp]	1.0	0.8583
AT1G62640		KAS III, KASIII	3-ketoacyl-acyl carrier protei...		Lus10004342 [exp]	5.0	0.7771
AT1G78915			Tetratricopeptide repeat (TPR)...		Lus10034802 [exp]	6.8	0.7961
AT5G60870		RUG3	RCC1/UVR8/GEF-like 3, Regulato...		Lus10042215 [exp]	8.9	0.7557
AT4G01040			Glycosyl hydrolase superfamily...		Lus10005946 [exp]	10.2	0.7603
AT3G02860	C2H2ZnF		zinc ion binding (.1.2)		Lus10037693 [exp]	11.9	0.7853
AT1G02410			cytochrome c oxidase assembly ...		Lus10031633 [exp]	13.0	0.7261
AT2G40435			unknown protein		Lus10010217 [exp]	13.7	0.7661
AT2G35130			Tetratricopeptide repeat (TPR)...		Lus10018318 [exp]	15.9	0.7248
AT4G23740			Leucine-rich repeat protein ki...		Lus10014943 [exp]	18.3	0.7359

Compare expression of checked genes

Lus10032821 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.