Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G24400 724 / 0 ATCIPK8, PKS11, CIPK8, SnRK3.13 SNF1-RELATED PROTEIN KINASE 3.13, PROTEIN KINASE 11, CBL-interacting protein kinase 8 (.1.2) AT5G35410 595 / 0 ATSOS2, CIPK24, SOS2, SnRK3.11 SNF1-RELATED PROTEIN KINASE 3.11, CBL-INTERACTING PROTEIN KINASE 24, SALT OVERLY SENSITIVE 2, Protein kinase superfamily protein (.1) AT1G30270 506 / 4e-178 PKS17, ATCIPK23, SnRK3.23, LKS1, CIPK23 SNF1-RELATED PROTEIN KINASE 3.23, SOS2-like protein kinase 17, LOW-K+-SENSITIVE 1, CBL-interacting protein kinase 23 (.1) AT2G26980 499 / 1e-175 CIPK3, SnRK3.17 SNF1-RELATED PROTEIN KINASE 3.17, CBL-interacting protein kinase 3 (.1.2.3.4.5) AT5G21326 491 / 9e-173 Ca2+regulated serine-threonine protein kinase family protein (.1) AT1G01140 491 / 2e-172 PKS6, CIPK9, SnRK3.12 SNF1-RELATED PROTEIN KINASE 3.12, PROTEIN KINASE 6, CBL-interacting protein kinase 9 (.1.2.3) AT5G45820 399 / 2e-136 PKS18, CIPK20, SnRK3.6 SNF1-RELATED PROTEIN KINASE 3.6, PROTEIN KINASE 18, CBL-interacting protein kinase 20 (.1) AT1G48260 372 / 5e-126 CIPK17, SnRK3.21 SNF1-RELATED PROTEIN KINASE 3.21, CBL-interacting protein kinase 17 (.1) AT3G17510 367 / 1e-123 CIPK1, SnRK3.16 SNF1-RELATED PROTEIN KINASE 3.16, CBL-interacting protein kinase 1 (.1.2) AT4G30960 367 / 1e-123 CIPK6, SIP3, SnRK3.14, ATCIPK6 SNF1-RELATED PROTEIN KINASE 3.14, CBL-INTERACTING PROTEIN KINASE 6, SOS3-interacting protein 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019411 [exp] 618 / 0 AT5G35410 729 / 0.0 SNF1-RELATED PROTEIN KINASE 3.11, CBL-INTERACTING PROTEIN KINASE 24, SALT OVERLY SENSITIVE 2, Protein kinase superfamily protein (.1) Lus10043264 [exp] 520 / 0 AT5G35410 630 / 0.0 SNF1-RELATED PROTEIN KINASE 3.11, CBL-INTERACTING PROTEIN KINASE 24, SALT OVERLY SENSITIVE 2, Protein kinase superfamily protein (.1) Lus10042816 [exp] 514 / 0 AT1G30270 794 / 0.0 SNF1-RELATED PROTEIN KINASE 3.23, SOS2-like protein kinase 17, LOW-K+-SENSITIVE 1, CBL-interacting protein kinase 23 (.1) Lus10028115 [exp] 514 / 0 AT1G30270 793 / 0.0 SNF1-RELATED PROTEIN KINASE 3.23, SOS2-like protein kinase 17, LOW-K+-SENSITIVE 1, CBL-interacting protein kinase 23 (.1) Lus10002692 [exp] 490 / 7e-172 AT1G01140 709 / 0.0 SNF1-RELATED PROTEIN KINASE 3.12, PROTEIN KINASE 6, CBL-interacting protein kinase 9 (.1.2.3) Lus10030210 [exp] 484 / 5e-170 AT1G01140 709 / 0.0 SNF1-RELATED PROTEIN KINASE 3.12, PROTEIN KINASE 6, CBL-interacting protein kinase 9 (.1.2.3) Lus10022590 [exp] 447 / 7e-156 AT2G26980 684 / 0.0 SNF1-RELATED PROTEIN KINASE 3.17, CBL-interacting protein kinase 3 (.1.2.3.4.5) Lus10036280 [exp] 389 / 2e-132 AT4G30960 662 / 0.0 SNF1-RELATED PROTEIN KINASE 3.14, CBL-INTERACTING PROTEIN KINASE 6, SOS3-interacting protein 3 (.1) Lus10021852 [exp] 388 / 3e-132 AT4G30960 658 / 0.0 SNF1-RELATED PROTEIN KINASE 3.14, CBL-INTERACTING PROTEIN KINASE 6, SOS3-interacting protein 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G109000 [exp] 660 / 0 AT4G24400 652 / 0.0 SNF1-RELATED PROTEIN KINASE 3.13, PROTEIN KINASE 11, CBL-interacting protein kinase 8 (.1.2) Potri.018G130500 [exp] 618 / 0 AT5G35410 711 / 0.0 SNF1-RELATED PROTEIN KINASE 3.11, CBL-INTERACTING PROTEIN KINASE 24, SALT OVERLY SENSITIVE 2, Protein kinase superfamily protein (.1) Potri.006G068400 [exp] 612 / 0 AT5G35410 686 / 0.0 SNF1-RELATED PROTEIN KINASE 3.11, CBL-INTERACTING PROTEIN KINASE 24, SALT OVERLY SENSITIVE 2, Protein kinase superfamily protein (.1) Potri.001G222600 [exp] 514 / 0 AT2G26980 752 / 0.0 SNF1-RELATED PROTEIN KINASE 3.17, CBL-interacting protein kinase 3 (.1.2.3.4.5) Potri.006G062800 [exp] 506 / 3e-178 AT1G30270 753 / 0.0 SNF1-RELATED PROTEIN KINASE 3.23, SOS2-like protein kinase 17, LOW-K+-SENSITIVE 1, CBL-interacting protein kinase 23 (.1) Potri.009G021000 [exp] 505 / 3e-178 AT2G26980 753 / 0.0 SNF1-RELATED PROTEIN KINASE 3.17, CBL-interacting protein kinase 3 (.1.2.3.4.5) Potri.018G119200 [exp] 495 / 8e-174 AT1G30270 749 / 0.0 SNF1-RELATED PROTEIN KINASE 3.23, SOS2-like protein kinase 17, LOW-K+-SENSITIVE 1, CBL-interacting protein kinase 23 (.1) Potri.014G104200 [exp] 492 / 5e-173 AT1G01140 688 / 0.0 SNF1-RELATED PROTEIN KINASE 3.12, PROTEIN KINASE 6, CBL-interacting protein kinase 9 (.1.2.3) Potri.002G177900 [exp] 489 / 1e-171 AT1G01140 711 / 0.0 SNF1-RELATED PROTEIN KINASE 3.12, PROTEIN KINASE 6, CBL-interacting protein kinase 9 (.1.2.3) Potri.010G002500 [exp] 404 / 3e-138 AT3G17510 631 / 0.0 SNF1-RELATED PROTEIN KINASE 3.16, CBL-interacting protein kinase 1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0573 [flax] [poplar] KA1-like PF03822 [flax] [poplar] NAF NAF domain CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10032822 pacid=23164831 polypeptide=Lus10032822 locus=Lus10032822.g ID=Lus10032822.BGIv1.0 annot-version=v1.0 ATGGTGGTGAGGAAAGTTGGCAAGTATGAGGTCGGGAGAACAATTGGGGAAGGAACATTTGCAAAGGTGAAGTTCGCTCAGAACACTGAGACTGGTGAGA GTGTGGCGATGAAAGTACTGGATCGCAGCACCATCTTCAAGCACAAGATGGTCGATCAGATCAAGAGGGAGATATCTATAATGAAACTTGTCAGGCATCC TAATGTTTTAGCCAGCCGTACCAAGATCTACATAATCTTGGAGTTCATTACAGGTGGTGAATTGTTTGATAAAATAGTGCATCATGGAAGGCTGAGTGAG GCTGAAGCTAGAAGATACTTTCAACAGCTTATAGATGGTGTGGACTATTGTCATAGTAAAGGAGTTTATCACAGGGATCTGAAGCCTGAAAATCTTTTGC TTGATTCACAAGGAAATTTAAAGATCTCTGACTTTGGTCTAAGTGCACTGCCCCCTCAAGGAGTTACCTTGCTACGAACAACTTGTGGGACTCCTAACTA TGTTGCTCCAGAGGTACTTAGTCACAAAGGTTACAATGGAGCTGTGGCTGATGTCTGGTCCTGTGGGGTTATCCTTTATGTTCTGATAACAGGATATCTT CCTTTTGATGAGCTTGATCTCACCACGTTATATAGCAAGGCATGGACTAATTCAATTGACAGTGCACAATTTTCATGTCCTCCTTGGTTTCCAGTTGCCG CAAAGACTTTGATCCACAGGATTTTGGATCCAAATCCTCAAACACGTATTACCATTGAAGATATCAGGGATGATGAGTGGTTTAAGAAAAACTATGTTCC TGTCAGAGTACCTGATAATGAAGATGTGAACTTGGACGATATAGACGCTGCTTTCGATGATCCTGAGGAACGAAGTGCTGCTGAAGAAGGTGGAAGTGAA GACTTGGGTCCTCTGATTCTAAATGCATTTGACTTAATCATTTTGTCACAAGGGCTAAACCTGGCAACACTATTTGACCGCGGCCAAGACTCTGTGAAGT ATCAAACAAGGTTTGTTTCTTGCAAGCCAGCAAAAGTAGTTTTGTCAACAATGGAAGTAGTTGCGCAGTCAATGGGTTACAAAACACATATCCGGAACTA CAAGATGAGAGTGGAAGGCCTTTCAGCTAACAAGACTGCTCATTTCTCAGTAATATTAGAAGTGTTTGAAGTTGCCCCAACGTTCTTTATGGTTGATGCA CAGAGAGCAGCTGGAGATACCAGCGAGTACCTCAAGTTTTACAGCAACTTCTGCGGCAAGCTTGAGGATATCATCTGGAAACCACCGGTGGAATCATCAG GGAAACATAAGATCACAAAGACGAAGAGCAAGAGGCGTTGA
AA sequence Show only first row Show all	>Lus10032822 pacid=23164831 polypeptide=Lus10032822 locus=Lus10032822.g ID=Lus10032822.BGIv1.0 annot-version=v1.0 MVVRKVGKYEVGRTIGEGTFAKVKFAQNTETGESVAMKVLDRSTIFKHKMVDQIKREISIMKLVRHPNVLASRTKIYIILEFITGGELFDKIVHHGRLSE AEARRYFQQLIDGVDYCHSKGVYHRDLKPENLLLDSQGNLKISDFGLSALPPQGVTLLRTTCGTPNYVAPEVLSHKGYNGAVADVWSCGVILYVLITGYL PFDELDLTTLYSKAWTNSIDSAQFSCPPWFPVAAKTLIHRILDPNPQTRITIEDIRDDEWFKKNYVPVRVPDNEDVNLDDIDAAFDDPEERSAAEEGGSE DLGPLILNAFDLIILSQGLNLATLFDRGQDSVKYQTRFVSCKPAKVVLSTMEVVAQSMGYKTHIRNYKMRVEGLSANKTAHFSVILEVFEVAPTFFMVDA QRAAGDTSEYLKFYSNFCGKLEDIIWKPPVESSGKHKITKTKSKRR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G24400		ATCIPK8, PKS11,...	SNF1-RELATED PROTEIN KINASE 3....		Lus10032822 [exp]	0	1
AT2G44180		MAP2A	methionine aminopeptidase 2A (...		Lus10000403 [exp]	1.4	0.9527
AT1G19270		DA1	DA1 (.1)		Lus10018789 [exp]	2.8	0.9281
AT3G08840			D-alanine--D-alanine ligase fa...		Lus10012211 [exp]	3.2	0.9325
AT3G12250	bZIP	BZIP45, TGA6	TGACG motif-binding factor 6 (...		Lus10026166 [exp]	3.2	0.9383
AT5G52210		ATGB1, ATARLB1	GTP-binding protein 1 (.1.2)		Lus10027446 [exp]	4.2	0.9349
AT1G44170		ALDH4, ALDH3H1	aldehyde dehydrogenase 4, alde...		Lus10042724 [exp]	6.5	0.9291
AT3G11290			unknown protein		Lus10002039 [exp]	7.7	0.9171
AT1G02860		BAH1, NLA	nitrogen limitation adaptation...		Lus10030375 [exp]	8.2	0.9333
AT5G16150		PGLCT, GLT1	GLUCOSE TRANSPORTER 1, plastid...		Lus10033568 [exp]	8.2	0.9024
AT4G08480		MEKK2, MAPKKK9	MAPK/ERK KINASE KINASE 2, mito...		Lus10029657 [exp]	9.5	0.9239

Compare expression of checked genes

Lus10032822 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.