Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description ATCG00480 218 / 5e-70 ATCG00480.1, ATPB ATP synthase subunit beta (.1) AT5G08690 101 / 9e-26 ATP synthase alpha/beta family protein (.1) AT5G08670 101 / 1e-25 ATP synthase alpha/beta family protein (.1) AT5G08680 101 / 1e-25 ATP synthase alpha/beta family protein (.1) ATCG00120 43 / 3e-05 ATCG00120.1, ATPA ATP synthase subunit alpha (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009173 [exp] 271 / 3e-90 ATCG00480 890 / 0.0 ATP synthase subunit beta (.1) Lus10034631 [exp] 106 / 1e-27 AT5G08680 928 / 0.0 ATP synthase alpha/beta family protein (.1) Lus10034632 [exp] 106 / 1e-27 AT5G08680 875 / 0.0 ATP synthase alpha/beta family protein (.1) Lus10035264 [exp] 106 / 2e-27 AT5G08680 925 / 0.0 ATP synthase alpha/beta family protein (.1) Lus10035263 [exp] 97 / 5e-24 AT5G08680 782 / 0.0 ATP synthase alpha/beta family protein (.1) Lus10024114 [exp] 50 / 2e-08 AT5G08680 120 / 8e-33 ATP synthase alpha/beta family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G162800 [exp] 231 / 5e-75 ATCG00480 927 / 0.0 ATP synthase subunit beta (.1) Potri.008G126600 [exp] 110 / 8e-29 AT5G08690 892 / 0.0 ATP synthase alpha/beta family protein (.1) Potri.010G116600 [exp] 108 / 3e-28 AT5G08690 871 / 0.0 ATP synthase alpha/beta family protein (.1) Potri.013G138000 [exp] 44 / 1e-05 ATCG00120 933 / 0.0 ATP synthase subunit alpha (.1) Potri.007G062242 [exp] 39 / 0.0006 ATMG01190 924 / 0.0 ATP synthase subunit 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0275 [flax] [poplar] HAS-barrel PF02874 [flax] [poplar] ATP-synt_ab_N ATP synthase alpha/beta family, beta-barrel domain
Representative CDS sequence Show only first row Show all	>Lus10032826 pacid=23164852 polypeptide=Lus10032826 locus=Lus10032826.g ID=Lus10032826.BGIv1.0 annot-version=v1.0 ATGATGAAAATCAATCCTACTACTCCCGATCCCAGGATTTCCATTTTTGAGAAAACAGACCTGGGGCATATCGCTCAAATCATCGAACAAGTACTAGATA TATATTTTCCCCGCGGAAAGATGCCTAATATTAACAATGCTCTCCTAGTTAAAGGTCAAGACTCCGCCGGTCCACAAATTAATGTGACTTGTGAAGTACA GCAATTATTAGGAAATAATAAAATTCGGGCTGTAGCTATGAGTGCTACAGATGGTTTAATGAGAGGAATGGAAGTGAGCGACACGGGAGCTCCTCTAAGT GTTCCGGTCGGTGGAGCAACTTTAGGACGAATTTTCAACGTGCTTGGAGAACCTATTGATGATTTAGGTCCGGTAGATACTTGCACAACATCCCCTATTC ATAGATCTGCGCCCGCCTTTATATAG
AA sequence Show only first row Show all	>Lus10032826 pacid=23164852 polypeptide=Lus10032826 locus=Lus10032826.g ID=Lus10032826.BGIv1.0 annot-version=v1.0 MMKINPTTPDPRISIFEKTDLGHIAQIIEQVLDIYFPRGKMPNINNALLVKGQDSAGPQINVTCEVQQLLGNNKIRAVAMSATDGLMRGMEVSDTGAPLS VPVGGATLGRIFNVLGEPIDDLGPVDTCTTSPIHRSAPAFI

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
ATCG00480		ATCG00480.1, AT...	ATP synthase subunit beta (.1)		Lus10032826 [exp]	0	1
ATCG00480		ATCG00480.1, AT...	ATP synthase subunit beta (.1)		Lus10009173 [exp]	1.4	0.9939
ATCG00480		ATCG00480.1, AT...	ATP synthase subunit beta (.1)		Lus10032827 [exp]	2.0	0.9912
ATCG00120		ATCG00120.1, AT...	ATP synthase subunit alpha (.1...		Lus10004894 [exp]	3.5	0.9705
ATCG00500		ATCG00500.1, AC...	acetyl-CoA carboxylase carboxy...		Lus10002473 [exp]	4.5	0.9406
ATCG00160		ATCG00160.1, RP...	ribosomal protein S2 (.1)		Lus10013628 [exp]	5.3	0.9157
ATCG00490		ATCG00490.1, RB...	ribulose-bisphosphate carboxyl...		Lus10032825 [exp]	5.3	0.9501
AT3G42860			zinc knuckle (CCHC-type) famil...		Lus10012985 [exp]	5.7	0.9130
ATCG00680		ATCG00680.1, PS...	photosystem II reaction center...		Lus10006593 [exp]	6.5	0.9229
ATCG00680		ATCG00680.1, PS...	photosystem II reaction center...		Lus10001686 [exp]	7.9	0.9110
ATCG00680		ATCG00680.1, PS...	photosystem II reaction center...		Lus10006594 [exp]	9.5	0.9014

Compare expression of checked genes

Lus10032826 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.