Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G24450 1554 / 0 PWD, GWD3, ATGWD2 "phosphoglucan, water dikinase", phosphoglucan, water dikinase (.1) AT1G10760 1188 / 0 GWD1, GWD, SOP1, SOP, SEX1 STARCH EXCESS 1, Pyruvate phosphate dikinase, PEP/pyruvate binding domain (.1) AT5G26570 149 / 4e-36 ATGWD3, OK1, PWD PHOSPHOGLUCAN WATER DIKINASE, catalytics;carbohydrate kinases;phosphoglucan, water dikinases (.1.2) AT4G24440 114 / 1e-29 transcription initiation factor IIA gamma chain / TFIIA-gamma (TFIIA-S) (.1), transcription initiation factor IIA gamma chain / TFIIA-gamma (TFIIA-S) (.2) AT1G69830 53 / 2e-06 ATAMY3, AMY3 alpha-amylase-like 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029118 [exp] 1164 / 0 AT1G10760 1889 / 0.0 STARCH EXCESS 1, Pyruvate phosphate dikinase, PEP/pyruvate binding domain (.1) Lus10013044 [exp] 1142 / 0 AT1G10760 1910 / 0.0 STARCH EXCESS 1, Pyruvate phosphate dikinase, PEP/pyruvate binding domain (.1) Lus10041275 [exp] 172 / 4e-43 AT5G26570 1353 / 0.0 PHOSPHOGLUCAN WATER DIKINASE, catalytics;carbohydrate kinases;phosphoglucan, water dikinases (.1.2) Lus10037434 [exp] 151 / 1e-36 AT5G26570 1508 / 0.0 PHOSPHOGLUCAN WATER DIKINASE, catalytics;carbohydrate kinases;phosphoglucan, water dikinases (.1.2) Lus10001864 [exp] 121 / 5e-32 AT4G24440 201 / 7e-69 transcription initiation factor IIA gamma chain / TFIIA-gamma (TFIIA-S) (.1), transcription initiation factor IIA gamma chain / TFIIA-gamma (TFIIA-S) (.2) Lus10013270 [exp] 52 / 4e-06 AT1G69830 1180 / 0.0 alpha-amylase-like 3 (.1) Lus10030793 [exp] 51 / 7e-06 AT1G69830 1173 / 0.0 alpha-amylase-like 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G044100 [exp] 1183 / 0 AT1G10760 1875 / 0.0 STARCH EXCESS 1, Pyruvate phosphate dikinase, PEP/pyruvate binding domain (.1) Potri.008G188150 [exp] 1159 / 0 AT1G10760 1781 / 0.0 STARCH EXCESS 1, Pyruvate phosphate dikinase, PEP/pyruvate binding domain (.1) Potri.014G147900 [exp] 164 / 1e-40 AT5G26570 1509 / 0.0 PHOSPHOGLUCAN WATER DIKINASE, catalytics;carbohydrate kinases;phosphoglucan, water dikinases (.1.2) Potri.002G234500 [exp] 155 / 6e-38 AT5G26570 1561 / 0.0 PHOSPHOGLUCAN WATER DIKINASE, catalytics;carbohydrate kinases;phosphoglucan, water dikinases (.1.2) Potri.005G151700 [exp] 111 / 1e-28 AT4G24440 204 / 4e-70 transcription initiation factor IIA gamma chain / TFIIA-gamma (TFIIA-S) (.1), transcription initiation factor IIA gamma chain / TFIIA-gamma (TFIIA-S) (.2) Potri.010G092900 [exp] 45 / 0.0006 AT1G69830 1236 / 0.0 alpha-amylase-like 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02268 [flax] [poplar] TFIIA_gamma_N Transcription initiation factor IIA, gamma subunit, helical domain CL0179 [flax] [poplar] ATP-grasp PF01326 [flax] [poplar] PPDK_N Pyruvate phosphate dikinase, AMP/ATP-binding domain
Representative CDS sequence Show only first row Show all	>Lus10032829 pacid=23164833 polypeptide=Lus10032829 locus=Lus10032829.g ID=Lus10032829.BGIv1.0 annot-version=v1.0 ATGGCGACGTTTGAGCTCTACAGAAGATCGACCATCGGCATGTGCCTGACGGAGACTTTGGACGAGATGGTTTCGAGTGGTACTCTCAGTCCGGAGCTCG CGATCCAGGTCCTTGTTCAGTTCGATAAGTCCATGACTGACGCATTGGATACACAAGTGAAGAGCAAGGTCTCGATCAAGATTAATGTTTCTGGTTCTTT GAGTGGACGCAACGTCAAGGTTGAACTTCAGCTCAACAACTGCACACGGACTTGGGTTCTACACTGGGGTTGCACTTTCCTAGCCAACAATGGCTGGTTC ATTCCTAGTGATGGAACCAATTCTTACAAGCCAGGTGCTTTGCAGACACCCTTTACTAAGAGTGGAGACTTGTATGTGATTACCATTGAGCTGCGGGACC CTAAGGTTGTAGCTATTGAATTTGTGTTGAAGGATGGCAGCCATGACAGATGGTTGAAACTGAACAACGGCAACTTCAGAGTGGAGTTACCTGAACATGA TGAAATACCAAAAGATGTGATTGAACGCAGAGCATATCAAATCTGGGAAAGGCAGGGTAGGCTTAACAGCTCGTCACAACAGCAGAAGCAAAATTATGAT GACGCTTTGAGGGAACTTCAAGACCAGTTAAGTAGAGGGTTGAGTTTGGACGAGTTAAGAAACATTGGAAGAAGTCCAAATCATTCTAGAGAAGAGTCAA AGGATCACCAAACTATATCCCATTACCACAAAAGGCATGACGTAGGGCAGTGGTTGCATAAGCCTCTAGGTAGTAACAAAAGCATAAATCATCGTCAGGT TTCTGTCCTGATGGATCTTGTAGAGAAAAGTTATGCAGCTGACAATGTGGTATCAAGACAGAGCTATTCCGTGGGGAACAACAGTGAACTAGTGGTCCTT GTGACATTAACACAAGGTGGTGACATTCATGTTCTGGTGGCAATGAACATAAAAGGTTCAATTGTTCTACACTGGGGCATATCCAAGTTGGGTTCAGCAG AATGGTTGGCCCCTCCCTCTGGAATACTACCCGAAAACTCCAAACTTATTCCTGGTGCTTGTCAGACATACTTCACAGAAATAGCAACATCAAAAGGCTT CTTTCAGGTTGTGGATATCAATGTGCGTCAACAGAAGTTGGAGGGGATCCAGTTTGTCATTTGGGCAGGAGGATCATGGATAAAAAACAATGGAGCAAAC TTCTCAGTGAATTTGATAGGAATTAATGTTGTTGGAGATAAGAAAGGTATTATCAACTGGTTACTTGATGAAATAGCTCACCGCGAAAAGGAGGCTGAGA GGTCATTGATGCATAGGTTCAACATTGCTACAGAACTGACAGACCGCTGCAAGGTTGAAGGGGAACTTGGTTTAGTTGGGATATTAGTGTGGTTGAGGTT CATGGTCTGCAGGTATCTCGCCTGGAACAAGAATTACAATGTCAAACCTCGTGAAATTAGTGAAGCCCAAGACAGGTTCACCAATTTACTACAAAGGATA TATTTGAGTCATCCAAGTGAGAGAGAAATTGTACGCCTAATTATGTCATGTGTCGGACGTGGAGGAAAGGGTGATGTTGGGCAGAGAATACGTGATGAGA TCCTTGTTATTCAGAGAAATAATGAGTGCAAAACTGGGATGATGGAGGAATGGCACCAAAAGTTGCACAACAATAGCAGCCCAGATGATGTTATCATTTG TCAGGCACTCTTAAACTATGTAACAAGTGGTTTCAAAAGGGATGTTTACTGGAAAACACTGATCGCTAATGGACTGACAAAAGAAAAGCTCGCAAGTTAT GACCGCCCAATCATATCAGAGCCTAGTTTCAGAAACAATGCTAAAGAGGATCTCATTCGAGACCTTACTATGTATTTAAAGACGTTAAAGGCTGTTCACT CGGGCGTCGACCTGGAATCTGCTATTGAGAGTTGTGTGGGACCTCCTTCCAAGGGGCACTACCTTGGAAGCATAGAAGAAAGAGATGCTTGTATTGGTGG CTTAACATCGAAACTACAGGAGTCATTGAACTTTGTCAGATCCCATGTTGCTGATGAGAACATAGCTCCTCTCATGGAGAAACTAGTGGAATCTCGCGTT GAACTCCGCCCATACCTGCTGACAACTCATGGTAAAGCAAAAGACATGCTCTTCCTTGATCTTGCGCTGGATTCAACAGTTAGAACAACGATGGAAAGGA AACTCAAAGATTTGAGTTTTGTGCAGCCTCCTGAATTTTCATTCTACATCACATTAGTGCTTGAAAATTTGTGCCTTTCTACTATCAACAACGAAGACCT CATTTATTGCACAATGGATTGGTATCGGGTTCGTGATTTATACAAACCAAATGATGCGCAATGGGCACTACAAGCAAAAGCTATTCTTGACCGACTACAA CTAATACTTGCTGAAAGGTCTATAAGCTTCTACTCAAAGATGCAGCCCACTATGCAGTATCTTGGCCGTTTGCTTGGCATTCAGAAGCAAGAGATTGATA CTTCAACAGAGGAGTTAATCAGGGCTGGTTCATCTGCTACTCTATCTGTGCTGATAAATCGTTTCAATCCAGTTCTCAGGAGAGTTGCCAACTTAGGCTG TTGGCAGGTTATCAGTCCTGTGGAAGTTCGTGGCTTCGTGGCTTTAGTGCATGATTTAACCACTATTCAAAACAAAGTCTACAAGAAACCAACTATAATG ATCGCAAATAAAGTAACAGGAGAGGAGGAGATTCCAGCTGGGATTGTTGCTGTTCTGACACCTGATATGCCTGATGTTCTCTCTCATGTCTCCATTAGAG CAAGGAATAGTAAGGTGTGCTTGGCGACGTGTTTTGATCAAAATGTTCTGAGGAATCTCAAGCTCAAGGACGGAAAAGTTATGTCAATAAAAATAAAATC AATGAGTTTGATTATCAGTGAAATCAGCGTCTCTGATTTGTCACCTCATCCATCAGTTTTTTCTTCTATTTTAAGAAGACCATCCACAACCTTGAAGAGG AAAACATTTTGTGGGAAGTATGCGATTTCAGTTGACGAGTTCAGTACAGAGACGGTTGGTGCGAAATCATGCAATATTAGATTTCTCCGAGAAAGAGTGT CGTCATGGATCAAAATTCCTAATTCAGTGGCACTGCCTTTTGGAACATTTGAAGCTGTTCTGTCAGAAGATATGAACAAAGACCTAGCTAGTAGGATTCT GGGCTTGCACAAATCTATCTCAGGTGGTGACCTCACGAAACTTAAAGAAATACAAAATGTAGTTCAGCAAATGCGTGCACCTATACATTTGAAAAATGAA CTGGCGAGCAAGATGAGAACTTCCAGAATACCTTGGTCAAGTGATCAAAGTGAAGAAAAGTGGAATCGTGCTTGGGAAGCAATAAAACAGGTATGGGCTT CAAAATGGAATGAAAGAGCATTTCTAAGTAGCAGGAAAGCTAACGTGAATATGGATAACCTGCGAATGGCGGTATTGATTCAAGAAGTAGTTTGTGCTGA CTATGCTTTTGTGATTCACACAAAGAATCCGTTATCTAGAGATGAATCAGAGATATACACAGAAGTAGTGAAGGGGTTGGGTGAATCGTTGGTCAGTGCA CACCCAGGACGAGCTCTGAGCTTTATTACCCGCAAAAACAATATGAAGAATCCTATTATCACCGGTTACCCAAGCAAGAACATAGGATTATATAGCAAGC CATCCATTATATTCAGATCAGACTCCAACGGAGAAGATCTACATGGATATGCTGGTGCCGGCCTTTATGACAGTGTAATACTTGAGAAGGAAGACAAAAT TGTGTTGGACTACTCAACAGATCGTTTGGTGATGGATAAAGCTTTCCAAACTTGGATGTTATCCAAAATAGCAGAAGCAGGAAAAATCATTGAAGCTCTT TATGGTTCCCCACAAGATATTGAAGGTGCTGTGAAAGATGGAGTGATTTATGTAGTACAGGCCAGGCCACAAATATGA
AA sequence Show only first row Show all	>Lus10032829 pacid=23164833 polypeptide=Lus10032829 locus=Lus10032829.g ID=Lus10032829.BGIv1.0 annot-version=v1.0 MATFELYRRSTIGMCLTETLDEMVSSGTLSPELAIQVLVQFDKSMTDALDTQVKSKVSIKINVSGSLSGRNVKVELQLNNCTRTWVLHWGCTFLANNGWF IPSDGTNSYKPGALQTPFTKSGDLYVITIELRDPKVVAIEFVLKDGSHDRWLKLNNGNFRVELPEHDEIPKDVIERRAYQIWERQGRLNSSSQQQKQNYD DALRELQDQLSRGLSLDELRNIGRSPNHSREESKDHQTISHYHKRHDVGQWLHKPLGSNKSINHRQVSVLMDLVEKSYAADNVVSRQSYSVGNNSELVVL VTLTQGGDIHVLVAMNIKGSIVLHWGISKLGSAEWLAPPSGILPENSKLIPGACQTYFTEIATSKGFFQVVDINVRQQKLEGIQFVIWAGGSWIKNNGAN FSVNLIGINVVGDKKGIINWLLDEIAHREKEAERSLMHRFNIATELTDRCKVEGELGLVGILVWLRFMVCRYLAWNKNYNVKPREISEAQDRFTNLLQRI YLSHPSEREIVRLIMSCVGRGGKGDVGQRIRDEILVIQRNNECKTGMMEEWHQKLHNNSSPDDVIICQALLNYVTSGFKRDVYWKTLIANGLTKEKLASY DRPIISEPSFRNNAKEDLIRDLTMYLKTLKAVHSGVDLESAIESCVGPPSKGHYLGSIEERDACIGGLTSKLQESLNFVRSHVADENIAPLMEKLVESRV ELRPYLLTTHGKAKDMLFLDLALDSTVRTTMERKLKDLSFVQPPEFSFYITLVLENLCLSTINNEDLIYCTMDWYRVRDLYKPNDAQWALQAKAILDRLQ LILAERSISFYSKMQPTMQYLGRLLGIQKQEIDTSTEELIRAGSSATLSVLINRFNPVLRRVANLGCWQVISPVEVRGFVALVHDLTTIQNKVYKKPTIM IANKVTGEEEIPAGIVAVLTPDMPDVLSHVSIRARNSKVCLATCFDQNVLRNLKLKDGKVMSIKIKSMSLIISEISVSDLSPHPSVFSSILRRPSTTLKR KTFCGKYAISVDEFSTETVGAKSCNIRFLRERVSSWIKIPNSVALPFGTFEAVLSEDMNKDLASRILGLHKSISGGDLTKLKEIQNVVQQMRAPIHLKNE LASKMRTSRIPWSSDQSEEKWNRAWEAIKQVWASKWNERAFLSSRKANVNMDNLRMAVLIQEVVCADYAFVIHTKNPLSRDESEIYTEVVKGLGESLVSA HPGRALSFITRKNNMKNPIITGYPSKNIGLYSKPSIIFRSDSNGEDLHGYAGAGLYDSVILEKEDKIVLDYSTDRLVMDKAFQTWMLSKIAEAGKIIEAL YGSPQDIEGAVKDGVIYVVQARPQI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G24450		PWD, GWD3, ATGW...	"phosphoglucan, water dikinase...		Lus10032829 [exp]	0	1
AT5G17770		CBR1, ATCBR	NADH:cytochrome B5 reductase 1...		Lus10034869 [exp]	1.0	0.9588
AT3G16360		AHP4	HPT phosphotransmitter 4 (.1.2...		Lus10038280 [exp]	2.2	0.9317
AT1G75250	MYB	RSM3, ATRL6	RADIALIS-LIKE SANT/MYB 3, RAD-...		Lus10010831 [exp]	2.4	0.9398
AT5G02070			Protein kinase family protein ...		Lus10014387 [exp]	3.5	0.9285
AT2G46660		CYP78A6	"cytochrome P450, family 78, s...		Lus10030216 [exp]	3.5	0.9099
AT1G60890			Phosphatidylinositol-4-phospha...		Lus10015456 [exp]	3.6	0.9090
AT5G64240		AtMCP1a, ATMC3	metacaspase 1a, metacaspase 3 ...		Lus10035630 [exp]	4.0	0.9398
AT1G67370		ASY1, ATASY1	ASYNAPTIC 1, DNA-binding HORMA...		Lus10040113 [exp]	5.0	0.8852
AT4G01370		ATMPK4	MAP kinase 4 (.1)		Lus10032295 [exp]	6.5	0.8977
AT3G25290			Auxin-responsive family protei...		Lus10000915 [exp]	7.5	0.9210

Compare expression of checked genes

Lus10032829 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.