Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G70320 1098 / 0 UPL2 ubiquitin-protein ligase 2 (.1) AT1G55860 1093 / 0 UPL1 ubiquitin-protein ligase 1 (.1.2) AT3G17205 248 / 1e-66 UPL6 ubiquitin protein ligase 6 (.1.2.3) AT3G53090 214 / 1e-55 UPL7 ubiquitin-protein ligase 7 (.1.2) AT4G12570 186 / 2e-47 UPL5 ubiquitin protein ligase 5 (.1) AT5G02880 149 / 2e-35 UPL4 ubiquitin-protein ligase 4 (.1) AT4G38600 116 / 2e-25 UPL3, KAK UBIQUITIN-PROTEIN LIGASE 3, KAKTUS, HEAT repeat ;HECT-domain (ubiquitin-transferase) (.1), HEAT repeat ;HECT-domain (ubiquitin-transferase) (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002605 [exp] 3267 / 0 AT1G55860 1128 / 0.0 ubiquitin-protein ligase 1 (.1.2) Lus10032589 [exp] 1119 / 0 AT1G55860 4402 / 0.0 ubiquitin-protein ligase 1 (.1.2) Lus10035589 [exp] 216 / 5e-56 AT3G53090 1385 / 0.0 ubiquitin-protein ligase 7 (.1.2) Lus10010493 [exp] 197 / 9e-51 AT4G12570 830 / 0.0 ubiquitin protein ligase 5 (.1) Lus10017098 [exp] 180 / 4e-45 AT3G17205 1249 / 0.0 ubiquitin protein ligase 6 (.1.2.3) Lus10008636 [exp] 168 / 4e-41 AT3G53090 1270 / 0.0 ubiquitin-protein ligase 7 (.1.2) Lus10003792 [exp] 140 / 2e-35 AT4G12570 409 / 3e-136 ubiquitin protein ligase 5 (.1) Lus10019908 [exp] 142 / 3e-33 AT4G38600 1545 / 0.0 UBIQUITIN-PROTEIN LIGASE 3, KAKTUS, HEAT repeat ;HECT-domain (ubiquitin-transferase) (.1), HEAT repeat ;HECT-domain (ubiquitin-transferase) (.2) Lus10027324 [exp] 122 / 1e-28 AT4G12570 373 / 1e-121 ubiquitin protein ligase 5 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G110500 [exp] 5127 / 0 AT1G55860 1125 / 0.0 ubiquitin-protein ligase 1 (.1.2) Potri.001G368600 [exp] 1108 / 0 AT1G55860 4297 / 0.0 ubiquitin-protein ligase 1 (.1.2) Potri.011G094100 [exp] 1104 / 0 AT1G55860 4187 / 0.0 ubiquitin-protein ligase 1 (.1.2) Potri.010G150000 [exp] 244 / 2e-65 AT3G17205 1506 / 0.0 ubiquitin protein ligase 6 (.1.2.3) Potri.008G101300 [exp] 239 / 1e-63 AT3G17205 1432 / 0.0 ubiquitin protein ligase 6 (.1.2.3) Potri.016G096500 [exp] 216 / 5e-56 AT3G53090 1447 / 0.0 ubiquitin-protein ligase 7 (.1.2) Potri.016G012900 [exp] 192 / 3e-49 AT4G12570 853 / 0.0 ubiquitin protein ligase 5 (.1) Potri.006G011701 [exp] 191 / 6e-49 AT4G12570 842 / 0.0 ubiquitin protein ligase 5 (.1) Potri.016G059800 [exp] 135 / 2e-31 AT4G12570 733 / 0.0 ubiquitin protein ligase 5 (.1) Potri.009G134300 [exp] 132 / 4e-30 AT4G38600 2234 / 0.0 UBIQUITIN-PROTEIN LIGASE 3, KAKTUS, HEAT repeat ;HECT-domain (ubiquitin-transferase) (.1), HEAT repeat ;HECT-domain (ubiquitin-transferase) (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF06012 [flax] [poplar] DUF908 Domain of Unknown Function (DUF908) CL0552 [flax] [poplar] Hect PF00632 [flax] [poplar] HECT HECT-domain (ubiquitin-transferase) CL0552 [flax] [poplar] PF06025 [flax] [poplar] DUF913 Domain of Unknown Function (DUF913) CL0214 [flax] [poplar] UBA PF00627 [flax] [poplar] UBA UBA/TS-N domain
Representative CDS sequence Show only first row Show all	>Lus10032830 pacid=23164845 polypeptide=Lus10032830 locus=Lus10032830.g ID=Lus10032830.BGIv1.0 annot-version=v1.0 ATGGCAGCGGAAAGATCCAACTTGCCGTCTAGGTTACGGCAGCTTTTGTCCGGTGAAAGCCTAATCGGGCCTTCCATTAAACTCGACTCTGAGCCTCCTT CAAAGATTAAAGCATTCATTGAAAAGGTCATCCAGAGTCCGTTGCAAGATATTGCAATACCACTCTCTTGCTTCCGTTGGGAGTACAGCAAGGGGAATTT TCACCATTGGAGGCCTCTCTTCTTGCATTTTGATACATACTTCAAGACTTACCTGTCTAGTAGGAATGATCTCCTCTTATCAGATGGCATCTTAGAAAAT GATAATGCATTTCCAAAACAAGCAGTTCTACAGATTTTGCGGGTCATGCAAATAATTTTGGAGAATTGTCCTAATAAGAGCTCATTTGATGGCTTGGAGG TTGGTACCGTGTTTTCTCTTCAGCACTTCAAGCTTCTTTTGGCATCAACCGATCCTGATATTCTCATTGCGTCTTTGGAAACACTTGCGGCCCTTGTGAA AATTAATCCCTGTAAGCTGCATGGGGGTGGGAAGTTGATCGGCTGTGGTTCTGTAAATAGCTACCTATTGTCCCTGGTTCAGGGTTGGGGGAGCAAAGAA GAGGGCCTAGGTCTATATTCATGTGTTACGGCAAATGAAAGGACTCAAGAAGAGGGACTTTCTTTATTTCCATCTGATGCAGAAGATGTTGGTCAAAAGT CTCAGTGCCGAATGGGTTCAACCCTTTATTTCGAATTGTATGGTCATAATTCTCAGAGGATGGTTGAGGGTATCGTTTCGTCTAGTTTGCAAGCCATACA TGTGCCAGATTTGCATTTAAGGAAGGAAGATGATCTATTGCTGTTGAAGGAATGCATTGAGCAATACAATGTTCCTCCTGATCTTCGATTCTCATTGTTG AGCCGAATCAGATTTGCTCGAGCCTTTCGGTCTCCTGGAATATGTAGGTTGTACTGCAGGATTTGCCTACTTGCATTTATTGTACTCGTCCAGTCGAGTG ATGCTAATGATGAACTTACGTCCTTTTTTGCAAATGAGCCCGAGTATACGAATGAGTTGATCAGGATTGTGAAATCTGAAGAAACTATTCCCGGCAGCAT CAGAACACTTGCAATGCAAGCCTTAGGGGCACAGTTAGCTGCTTATTCAGCTTCTCATGAGCGAGCTCGGATACTAAGTGGATCAAGCATCAGCTTTGCT GTGGGAAACCGGATGATTCTGCTGAATGTACTACAGAGAGCTGTTCTTTCATTGAAGAATTCAAGTGACCAATCTTCACTTTCATTTGTGCAAGCACTTC TTCAGTTCTATTTGCTCCATATAGTTTCTTCCTCGGCTTCAGGAAGCAATGTACGTGGGTCTGGGATGGTCCCTACATTTTTGCCACTTTTGGAGGATTC AGATTCCACCCATATGCACCTTGTTTATTTGGCCGTGAAAGCCCTACAGAAGCTGATGGATTATAGTAGTTCTGCTGTCTCACATAGAATCATAGATTCT ACTGTGGAGAATGATAATTCAATGATCATTGGTGAATGCTCAAGGGTTAATGACAATCTCATATTTACTCAAAAACGACTTGTTAAGGTTCTTTTAAAGG CCCTTGGGTCTGCTACCTATGCCCCTTCCCACAACACCAGATCTTGGAACTCTCACGACAGTTCTTTACCTTCTACATTGTCTCTTATCTATCAGAACTC AACTAAATTTGGCGGTGATATTTACTATTCAGCAGTCACTGTTATGAGTGAAATCATCCACAAAGATCCAACTTGTTTCTCGGCATTGCAAGAAATGCGT CTCCCTGATGCATTTTTATCATCAGTGGTGGCTGGAGTACTTCCTTCTTCTAAAGCTCTTACTTGTGTTCCTAATGGTCTTGGTGCCATATGCCTAAATG CAAAAGGCTTAGAAGCAGTAAAAGAAACCTCAGCTTTGCGATTTCTGATTGACATCTTTACCAGCAGAAAATACGTGCTAGCAATGAATGAAGCTATTGT TCTGTTGGCTAATGCGGTGGAGGAGCTTCTCAGACATGTTGCTTCACTAAGAGGAGCTGGAGTTGATATAATTATCGAAATTATTGATAAAATGACTTCC TTTGGGGATGTGAATGGTGCAGAGTCATCAGGGAAGGCTGCCAGTAGTAATGAAATGGAAATGGACTTGGAAGATAAGGAAGGTGATGATTTGGGCACTG AAGGCTTGAGCAATGATCAATTTGTTCAACTATGCATATTTCATTTGATGGTTTTGCTGCATAGAACAATGGAAAATTCAGAGACATGTCGCTTGTTTGT AGAGAAGTCAGGCATTGAAGCGTTATTGAAACTTCTATTGCGGCCAGCCATTGTCCAGTCATCTGAAGGGATGTCTATTGCGCTGCACAGCACGATGGTT TTCAAGGGTTTTACCCAACATCACTCTGCCCCTCTAGCACGTGCTTTCTGTTCCTCTCTTAGAGAACATCTTAGGATATCTATGGTTGGTTTTGGATCTG TTTCAGGCTCTTTCTTGCTGGATCCTAAGTCTGAAATTGATGATGCAATATTTTCGTCACTTTTCCTGATCGAGTTCCTTCTATTTCTTGCTGCCTCAAA AGACAATCGCTGGGTAGCTGCTTTGCTGACTGAATTTGGAAGTGGCAGCAAAAAAGTTTTTGGAGATATTTGGAGGATTGCTTTATTTGAAGATGCCAAG CTTGAGATGGAAGATAATACTGCAACTTCGTCTGAGCTTCAGCAGTCTGACCCAACCAATGATTCTGAAGAGCAGCGATTTAATTCATTCAGACAGTTTC TTGATCCTTTATTGAGGAGGAGGACAGCAGGGTGGAGTGTTGAATCACAATTTTTTGATCTCATAAACTTGTATCGGGATCTTGGACGTACTGCTGGATA TACCCAGAGAATGGGAACTGATGGTCCATTGAGCCGGTTTGGGTCCGTTAATTCACACTCCAATGAGCCTTCTACAACTACTGGAGATGCTGGTCGGAAA GAGAGTGACAAGCAAAGATCTTACCGTTCTGCTTGCTGTGACATGATGAGGTCCCTTTCTTTCCATATTACACATTTGTTCCAAGAATTGGGAAAGTCAA TGTTACTTCCATCTCGTCGTCGAGACGATACTGTAACTGTCTCCCCTTCTTCTAAAGTGGTTGCACGTACATTTGCTTCTACTGCATTGGATCATATGGA CTTTACTGGTCACGTAAGCTCTTCTGGGTCAGATGTATCAAAGTCAGCAAAATGTCGCTACTTTGGCAAGGTTATTGATTTCATCGACGGTATTCTACTG GATAGGCCTGATTCCTGTAACCCAATATTGCTAAATTGCTTATATGGACATGGAGTTATTCAGTCAGTTCTGACCACATTTGAGGCAACAAGTCTTCTGC TATTTTCAGTAAACAGGGCTCCATCATCCCCTATGGATACTGATGATGAGACCACAAAACAGGATGCTAAAGAATTTGCTGATCATTCCTGGATTTATGG TCCCTTGTCTAGCTACAGCAAACTTATGGACCACTTGGTCACATCATCATTTATTTTGTCTCCATTCACCAAGCACCTCCTTATACAGCCTCTGGAAAAT GCAGTTATAACATTCCCTAGGGATCCAGAGACATTTGTGAAAATACTACAGTCTATGGTGCTGAAGGCAGTGCTTCCTGTTTGGACACATGCACAATTTC CTGACTGCAGTATTGAGTTCATCAGTACAGTGATTTCAATCATTAGGCATGTGTATTCTGGAATTGAAGTGAAAAATATTGCTAGCAATGCCAATGCTCG AGTTATTGGCCCCCCTCCAAATGAAACAACTATTTCAACAATTGTGGAGATGGGATTTTCCAGGGCTAGGGCTGAAGAAGCTCTCAGGCAGGTGGGGTCG AATAGTGTAGAATTGGCAATGGAGTGGTTGTTCTCTCATCCTGAGGAGGTTCAAGAAGATGATGAACTAGCCCGTGCGCTTGCTATGTCGCTTGGTAATT CAGAATCAGATGTGAAAGAAGATGCAGCAAATTCTAGCACACAACAGCTTGAAGAAGACACTGTCCAGCTTCCCCCAGTTGGGGATTTGATAGCAACATG TATCAAGCTGCTGCAAGTTAAGGAATCTGTAGCTTTTCCAGTACGTGACCTGCTTTCACTAATTTGTTCACAGAATGATGGGCAATATAGGTCAAATGTG ATCAGTGTCATTCTTGACCAAGTGAATGGAAGAAGTATGGCTTCTGATGAAAAAAAGTCTACCATTTTGTTTTCGTTGTTTCATGTTCTCGCCTTAATTC TTCATGAGGATGTTGGGGCCAGAGAAGTTGCCTCCAAGAATGGTCTGGTTCAGGTTGTGCTGGATTTACTTTCAGAATGGGATTCTGGTTGTTCAGTGGG CCAGCATGTCCCAAAATGGGTAACAACTGCTTTTCTTGCTATGGATCGGTTGCTGCAAAGTGATAAAAAACTGGAGTCCGAAATAATAGAGCAGCTGAAG AAGGATAGTACTAGCATTCAGCAAACGTCACTGACTATTGATGAGGAAAAGCGGGACAAGTTGCAGATTGCACTGGGATCTCCATTGAAGCACATTAGCA TTGATGAACAGAAGAGACTTGTCCAAATTGCTTGCAATTGCATAAAGAAGAAACTTCCATCAGAGATGATGCATGCTGTTCTGCAGCTGTGTTCTAGTCT CACTCGACCTCATTCCAATGCCATCAGCTTTCTAGAAGCAGAGGGTGTAAGTTCGTTGCTTTCTTTGCCAACAAGTAGCCTTTTTCCTGGCTTTGACACT GTTGCTGCCTCTACCATCTGTCATGTTCTTGAAGATCCTCAAACTCTCCAGCAAGCCATGGAATCTGAGATAAGGCATAGCCTTGTTGCTGCTGCTAACA GACACTCAAATGGAAGAGTTACTCCTCGCAATTTCCTTGCGAACTTGAGTTCTGTGATATCCAGGGACCCTGTTACTTTTATGCAGGCTGCAAGGGCTGT TTGCCAAGTTGAGATGGTGGGGGAGAGGTCTTACATTGTGTTGATTAAAGATCGTGAGAAAGATAAAATCAAAGAGAAAGAAAAAGACAAGGATAAAACC TTGGAGAAAGAAAAGCCTCACTCTAGCGAGAGGAAGCATGCTTTTGGCAATAACACAACAGCAGCAGGTAGTGGACATGGCAAACCTAACGATACTAACT CCAAGAGTGTGAAGGCTCATCGGAAGTCTCCTCAGAGCTTTGTACATGTTATTGAGCTGCTTTTGGATTCAATCATTAGCTTTGTACCACCTACTAAGGA TGAGAAACCATCATTGAATGATATGGATATAGACGTTGCTGCTGTTAAAGGGAAAGGTAAAGCGGTGGTAACCATGTCCGAAGGAAATGAAGCTAGTAGT CGAGAAGCTTCTGCGTCGCTTGCAAAGATTGTATTTATCCTAAAGCTTTTGACCGAGATTGTCTTGATGTATTCACCATCAGTTCATGTGCTACTTAGAA GGGATGTTGAAGTTAGCAGTAGTGGGGGTCCTCATCAAAAGAATTCTGGTTTGTGTACTGGAGGTATATTCTATCACATGGTTCATAAATTTATTCCTTG TTCCAGAAATGTGAAAAAGGAGAGGAAAACAGATGGTGATTGGAGGCATAAATTGGCAACCAGGGCCAGTCAATTTTTGGTTGCAGCATGCGTTCGCTCT GCTGAGGCAAGGAAGAGGGTGTTCATGGAGATGGATTGCATTTTGAACAAATTTGTTGATTCTGGTGAGGGATTGAGTACACCAACCAGTGATGTACAGA CATACCTTGATCTTCTTAATGATGTTTTGGCTGGCCGTACTCCTACGGGATCTTACATTTCATCTGAAGCTGCTGCAACATTCATTGAAGTTGGTTTGGT AAAATCGTTGACTCGAACTCTTGAAGTATTAGATCTCGATCATGATGACTCGCCGAAAGTTGTAACTGGGATTATCAAAGCTTTGGAGTTGGTGACGAAG GAACACATCAATACCTCTGACTCTAGTGCAGTGAAAGGTGACAATGCTTCAAAACCTCCTACTGAGGTTCAAGCCAGAGGAACAGAGAACCATGCTTCTG GATCTCAGCCCACTGAACTTGAGATTCCATCAAATCCTACTGTGCTAGCTGACCGTGTTGAATTGCCAAATCCTGCTCAAAATTATGGTGGATCTGAAAC TGTCACAGATGATATGGAACATGACCAGGATCTCGACGGAAGTTTTGTTCCGGCAACTGAGGACGATTATATGCAGGAAAGTTCTGGGGATACAAGGGGT ATTGAAACTGGACTGGATACAGTTGAAATTCAATTTGACATCCAGCCTCGCGGACAGGAAATTCTTGAAGAAGATGAAGATGAGGATATGTCTGCTGATG AAGGGGATGAAGTGGATGATGATAATGAGTCTGAAGATGACGATGACGAGGATGAAGATGATGAGGAACACAATGACTTGGAAGAAGATGAAGTCCATCA CTTGCCACACCCTGATACAGACCAAGATGACCATGATATGGATGATGATGAATTTGATGAGGAAGTGTTGGAGGAGGATGATGAAGATGAAGAACAAGAT GATGATGGAGTTTTATTACGCTTAGAGGAAGGGATCAATGGGATAAATGTTTTCGATCATATCGAAGTGTTTGGAAGAGACCATAGCTTCCCTAGTGAAA CTCTGCATGTGATGCCGGTTGAAGTTTTTGGTTCAAGACGTCAAGGACGGACAACATCCATCTACAATCTTCTTGGTAGGGGTGGTGACAGCTCTGCTCC ATCCCGACATCCCCTTCTGAGTGGAAACCCTCAGCAGATGGCCATTTCCAGTCAAGCAGATAGGAATCTTGAGAATACGTCACAGCAGTTGGATACTATT TTCCGTTCACTGAGAAATGGGCGCCATGGACACCGATTAAATCTGTGGATGGATGATAATCAACAAACTGGTGGTGCTAATTCATCTGTACCTCCTGGCC TTGAGGATTTGCTTGTTTCTCAGTTAAGACAACCATCCTCTGAAAGATCATCTGATCCTAACCCGTTGGCAACTGCACCCAAGACTGATGGTGCAGTGAG TCAATCTCAAGAACCTGAAGCACAGTCTGGTGCCCTTGTCGAGAACAATGTGGACCCCAGAACTAGCAATGTGCACCATGCTGCTGGTGTAGTAAATGAT GAATCTGCTACTGTCACTGTCAGGCCTCCTGCTGATGATTCTCATTCGCATACCGTTGAGATGCAGTTTGAACAAAATGATGCACCTGCACGTGATGTGG AAGCAGTAAGCCAAGAAAGTGGAGGAAGTGCAGCAACATTAGGGGAAAGCCTTAGGAGTCTTGATGTTGAAATTGGAAGTGCTGATGGACATGATGATGG TGGAGAAAGGCAAGGTTCAGCTGATAGAATGCCTTTGGATCCTCAAGCAACTCGAAGAAGATCTAATGTGTCCTTCGGCAATTCTGCTCCTGCAAGTGTG AGAGATGCATCTCTCCATAGTTTGACCGAAGTTTCAGAAAATTCTAGCAGGGATGCAGATCAAGATGGTCCAGCAGTGGAGCAGCAAGCTGCTGGTGATG CGGGCGCAGGATCAATTGATCCTGCTTTCTTGGATGCCCTTCCTGAGGAGTTGCGTGCTGAAGTTCTTTCTGCTCAACAGGGCCAAGTTGCACAGCCTTC AAGTGCTGAACAACAAAGCACGGGTGAAGATATAGATCCTGAATTTCTTGCTGCTCTTCCTCCTGAAATACGAGCTGAAGTTTTAGCTCAACAACAAGCA CAGCGCCTGCATCAATCACATGAACTTGAAGGCCAGCCTGTGGAAATGGATACAGTGTCAATTATTGCTACATTTCCTTCAGATTTACGGGAAGAGGTTC TCCTAACATCTTCAGATGCTGTGCTTGCAAATCTAACTCCTGCTTTGGTTGCGGAGGCTAATATGTTACGTGAAAGGTTTGCACACCGTTACCGTAACCG TACACTTTTTGGTATGTATCCCAGAAGCCGTAGAGGTGAGTCATCTCGACGGGGTGAGGGCACTGGTTTTAGCCTCGAGAGAGGTGGGATTGCCTCGAGG AGATCTATTGCTGGCAAGGTTGTGGAAGCTGATGGATCTCCGTTAGTTGAGACGGAAGCTGTCCATGCGATGATTCGCGTGCTTCGAATCGTGCAGCCCC TCTATAAAGGTCCACTACAGAGGCTTCTACTGAACATATGTGCTCATGGAGAAACCAGAACTACTTTGGTCAAAATCCTGATGGACATGCTGATGGTTGA CATGAGAAAGTCCACCAATAGTTTAAGGACTGCTGAGCCTTCATATCGCCTTTATGCTTGTCAAAACAATGTCATGTATTCGCGACCACAATCTTTTGAC GGAGTTCCACCTCTGGTTTCTCGGCGTATTCTGGAGACTCTAACTTACTTGGCTAGAAACCATTCTTATATGGCGAAAATTCTGCTTCAGTTTAGGTTAC CTTTGCCTAGTCAACAGCATACAGAGGATGTTGTTGTATCACGTGGTAAAGCAGTTGCGACTGAAGAGTTTGAAACAGATGGTAATCAGCATGAAGGTGG ATATGTGTCAATCGCTTTGCTTCTGAGCCTCTTGAAACAACCACTTTATTTGAGAAGTATCGCACATCTGGAACAGTTGCTCAGCTTACTGGAGGTTATT ATTGACAATGCTGAAAGCAAGTCAAGTATATCAGATAAATCTCCGGATGCTAATGCGCAAAATCAGGATGCTGAACTCCAGACTTCACAGGCAGATACAG GAAGGGAAACGGGTGTTGCTGCTGGGGTAGTAGCTGCTGGTTCATCATCAGCTATTGTATCATCAAAACCGACTACCTCTAGTGCAAGTAATGAATGCGA TACTCTACATATCTTGCTTAACCTGCCACGGCCAGAACTCCGGCTCCTTTGTTCATTGCTTGCACAGGAAGGTCTATCAGATAATGCGTATACTCTTGTA GCAGAGGTTATGAAGAAGCTAGTTGCTATTGCTCCAACTCATTGTCATCTATTCATCACCGAGTTAGCTGCTGCTATACAGAATCTGACTAAATCTGCTA TGCGTGAGCTGCATATGTTTGGGGAAGCGGTGAAAGCACTCCTGAGTACAACATCAACTGATGGAGCTGCCATTTTAAGAGTTATACAGACACTAAGTGC TTTTATAACATTGCTGGCTGATAAAGATAAAGATCAGCCAAGCCTTCCAGAAAAGGAGCTTACTGATGCTCTGTCTCAGGTTCATAACATTAATGCAGCT CTAGAGCCTTTGTGGTCAGAGCTTAGCACATGCATAAGCAAAATAGAGAGCTTTTCGGAATCGTCATCAGATGTGTTGCTTCCACCAAGAAATCCTGCAC TGAAGCCTTCTGGTACTATGCCTCCTCTTCCGGCGGGCTCTCAGAATATCTTACCTTATATCGAGTCCTTCTTTGTGATGTGCGAAAAGTTGCACCCAGC ACAACCAGGGTCTAGTCATGACTATGGTGTTTCGAGTATCGAGGTTGACGACACAAGCACCTCTTCTGCTCAGCAGAAAGTCTCAGGTCCTGTTTCAAGA GTTGATGAGAAACATGTTGCCTTTGTAAGGTTCTCCGAGAAACATAAGAAACTGCTGAATGCTTTCATCCGTCAGAATCCTGCACTGCTTGAGAAGTCTT TCTCACTCTTCTTGAAGGTGCCCCGCTTCATTGATTTTGACAACAAGAGAGCGCACTTCAGATCAAAAATTAAGCATCAACATGATCATCACCACAGTCC ATTGAGAATATCTGTAAGAAGAGCTTACATCCTCGAAGATTCATATAACCAACTCCGCATGCGGTCAACTCAAGACTTGAAGGGGAGGTTGACTGTTCAC TTCCAAGGAGAGGAGGGTATCGATGCTGGTGGTCTGACAAGGGAATGGTATCAGCTGCTTTCCAGGGTTATTTTTGACAAGGGAGCATTGCTTTTCACAA CAGTTGGCAATGACTCAACATTTCAGCCCAACCCCAACTCCGTCTATCAAACTGAACATCTATCATACTTCAAATTTGTCGGGAGAGTTGTCGGGAAAGC ACTATTTGATGGGCAGCTCTTAGATGTCCACTTTACCCGATCTTTTTATAAGCACATTTTAGGAGTGAAAGTTACATATCACGATATTGAAGCAATTGAT CCTGATTATTTCAAAAACTTGAAATGGTTGCTTGAGAATGATATAAGCGATCTATTGGACCTTACCTTCAGTATTGATGCTGATGAGGAAAAGCTAATTT TGTATGAAAGAACTGAGGTCACTGATCATGAATTGATTCCTGGAGGACGCAACATAAAAGTGACAGAGGAAAACAAGCACCAGTATGTTGATTTAGTTGC GGAGCATCGGTTGACTACAGCTATTCGTCCTCAAATAAATGCTTTCCTGGAAGGGTTCACTGAACTGGTTCAAAGAGAGTTGATATCCATATTTAATGAT AAGGAATTGGAATTGTTGATAAGCGGTCTTCCGGATATCGACTTGGATGACATGAGAGGAAACACAGAGTATTCAGGGTACAGTCCTGCATCTCCAGTTA TCCAGTGGTTCTGGGAAGTTGTTCAGGGATTCAGCAAGGAGGATAAGGCTCGACTGTTGCAATTTGTGACTGGCACATCCAAGGTACCATTAGAAGGGTT CAGCGCCCTTCAAGGGATATCAGGAGCACAGAAATTCCAGATACACAAAGCCTACGGTAGTGCTGATCACTTGCCATCAGCGCATACATGTTTCAACCAA TTGGATTTGCCAGAGTATCCTTCAAAAGAGCATTTGGAGGAGAGGCTGTTGCTTGCAATCCATGAGGGGAGTGAAGGTTTTGGATTCGGCTAA
AA sequence Show only first row Show all	>Lus10032830 pacid=23164845 polypeptide=Lus10032830 locus=Lus10032830.g ID=Lus10032830.BGIv1.0 annot-version=v1.0 MAAERSNLPSRLRQLLSGESLIGPSIKLDSEPPSKIKAFIEKVIQSPLQDIAIPLSCFRWEYSKGNFHHWRPLFLHFDTYFKTYLSSRNDLLLSDGILEN DNAFPKQAVLQILRVMQIILENCPNKSSFDGLEVGTVFSLQHFKLLLASTDPDILIASLETLAALVKINPCKLHGGGKLIGCGSVNSYLLSLVQGWGSKE EGLGLYSCVTANERTQEEGLSLFPSDAEDVGQKSQCRMGSTLYFELYGHNSQRMVEGIVSSSLQAIHVPDLHLRKEDDLLLLKECIEQYNVPPDLRFSLL SRIRFARAFRSPGICRLYCRICLLAFIVLVQSSDANDELTSFFANEPEYTNELIRIVKSEETIPGSIRTLAMQALGAQLAAYSASHERARILSGSSISFA VGNRMILLNVLQRAVLSLKNSSDQSSLSFVQALLQFYLLHIVSSSASGSNVRGSGMVPTFLPLLEDSDSTHMHLVYLAVKALQKLMDYSSSAVSHRIIDS TVENDNSMIIGECSRVNDNLIFTQKRLVKVLLKALGSATYAPSHNTRSWNSHDSSLPSTLSLIYQNSTKFGGDIYYSAVTVMSEIIHKDPTCFSALQEMR LPDAFLSSVVAGVLPSSKALTCVPNGLGAICLNAKGLEAVKETSALRFLIDIFTSRKYVLAMNEAIVLLANAVEELLRHVASLRGAGVDIIIEIIDKMTS FGDVNGAESSGKAASSNEMEMDLEDKEGDDLGTEGLSNDQFVQLCIFHLMVLLHRTMENSETCRLFVEKSGIEALLKLLLRPAIVQSSEGMSIALHSTMV FKGFTQHHSAPLARAFCSSLREHLRISMVGFGSVSGSFLLDPKSEIDDAIFSSLFLIEFLLFLAASKDNRWVAALLTEFGSGSKKVFGDIWRIALFEDAK LEMEDNTATSSELQQSDPTNDSEEQRFNSFRQFLDPLLRRRTAGWSVESQFFDLINLYRDLGRTAGYTQRMGTDGPLSRFGSVNSHSNEPSTTTGDAGRK ESDKQRSYRSACCDMMRSLSFHITHLFQELGKSMLLPSRRRDDTVTVSPSSKVVARTFASTALDHMDFTGHVSSSGSDVSKSAKCRYFGKVIDFIDGILL DRPDSCNPILLNCLYGHGVIQSVLTTFEATSLLLFSVNRAPSSPMDTDDETTKQDAKEFADHSWIYGPLSSYSKLMDHLVTSSFILSPFTKHLLIQPLEN AVITFPRDPETFVKILQSMVLKAVLPVWTHAQFPDCSIEFISTVISIIRHVYSGIEVKNIASNANARVIGPPPNETTISTIVEMGFSRARAEEALRQVGS NSVELAMEWLFSHPEEVQEDDELARALAMSLGNSESDVKEDAANSSTQQLEEDTVQLPPVGDLIATCIKLLQVKESVAFPVRDLLSLICSQNDGQYRSNV ISVILDQVNGRSMASDEKKSTILFSLFHVLALILHEDVGAREVASKNGLVQVVLDLLSEWDSGCSVGQHVPKWVTTAFLAMDRLLQSDKKLESEIIEQLK KDSTSIQQTSLTIDEEKRDKLQIALGSPLKHISIDEQKRLVQIACNCIKKKLPSEMMHAVLQLCSSLTRPHSNAISFLEAEGVSSLLSLPTSSLFPGFDT VAASTICHVLEDPQTLQQAMESEIRHSLVAAANRHSNGRVTPRNFLANLSSVISRDPVTFMQAARAVCQVEMVGERSYIVLIKDREKDKIKEKEKDKDKT LEKEKPHSSERKHAFGNNTTAAGSGHGKPNDTNSKSVKAHRKSPQSFVHVIELLLDSIISFVPPTKDEKPSLNDMDIDVAAVKGKGKAVVTMSEGNEASS REASASLAKIVFILKLLTEIVLMYSPSVHVLLRRDVEVSSSGGPHQKNSGLCTGGIFYHMVHKFIPCSRNVKKERKTDGDWRHKLATRASQFLVAACVRS AEARKRVFMEMDCILNKFVDSGEGLSTPTSDVQTYLDLLNDVLAGRTPTGSYISSEAAATFIEVGLVKSLTRTLEVLDLDHDDSPKVVTGIIKALELVTK EHINTSDSSAVKGDNASKPPTEVQARGTENHASGSQPTELEIPSNPTVLADRVELPNPAQNYGGSETVTDDMEHDQDLDGSFVPATEDDYMQESSGDTRG IETGLDTVEIQFDIQPRGQEILEEDEDEDMSADEGDEVDDDNESEDDDDEDEDDEEHNDLEEDEVHHLPHPDTDQDDHDMDDDEFDEEVLEEDDEDEEQD DDGVLLRLEEGINGINVFDHIEVFGRDHSFPSETLHVMPVEVFGSRRQGRTTSIYNLLGRGGDSSAPSRHPLLSGNPQQMAISSQADRNLENTSQQLDTI FRSLRNGRHGHRLNLWMDDNQQTGGANSSVPPGLEDLLVSQLRQPSSERSSDPNPLATAPKTDGAVSQSQEPEAQSGALVENNVDPRTSNVHHAAGVVND ESATVTVRPPADDSHSHTVEMQFEQNDAPARDVEAVSQESGGSAATLGESLRSLDVEIGSADGHDDGGERQGSADRMPLDPQATRRRSNVSFGNSAPASV RDASLHSLTEVSENSSRDADQDGPAVEQQAAGDAGAGSIDPAFLDALPEELRAEVLSAQQGQVAQPSSAEQQSTGEDIDPEFLAALPPEIRAEVLAQQQA QRLHQSHELEGQPVEMDTVSIIATFPSDLREEVLLTSSDAVLANLTPALVAEANMLRERFAHRYRNRTLFGMYPRSRRGESSRRGEGTGFSLERGGIASR RSIAGKVVEADGSPLVETEAVHAMIRVLRIVQPLYKGPLQRLLLNICAHGETRTTLVKILMDMLMVDMRKSTNSLRTAEPSYRLYACQNNVMYSRPQSFD GVPPLVSRRILETLTYLARNHSYMAKILLQFRLPLPSQQHTEDVVVSRGKAVATEEFETDGNQHEGGYVSIALLLSLLKQPLYLRSIAHLEQLLSLLEVI IDNAESKSSISDKSPDANAQNQDAELQTSQADTGRETGVAAGVVAAGSSSAIVSSKPTTSSASNECDTLHILLNLPRPELRLLCSLLAQEGLSDNAYTLV AEVMKKLVAIAPTHCHLFITELAAAIQNLTKSAMRELHMFGEAVKALLSTTSTDGAAILRVIQTLSAFITLLADKDKDQPSLPEKELTDALSQVHNINAA LEPLWSELSTCISKIESFSESSSDVLLPPRNPALKPSGTMPPLPAGSQNILPYIESFFVMCEKLHPAQPGSSHDYGVSSIEVDDTSTSSAQQKVSGPVSR VDEKHVAFVRFSEKHKKLLNAFIRQNPALLEKSFSLFLKVPRFIDFDNKRAHFRSKIKHQHDHHHSPLRISVRRAYILEDSYNQLRMRSTQDLKGRLTVH FQGEEGIDAGGLTREWYQLLSRVIFDKGALLFTTVGNDSTFQPNPNSVYQTEHLSYFKFVGRVVGKALFDGQLLDVHFTRSFYKHILGVKVTYHDIEAID PDYFKNLKWLLENDISDLLDLTFSIDADEEKLILYERTEVTDHELIPGGRNIKVTEENKHQYVDLVAEHRLTTAIRPQINAFLEGFTELVQRELISIFND KELELLISGLPDIDLDDMRGNTEYSGYSPASPVIQWFWEVVQGFSKEDKARLLQFVTGTSKVPLEGFSALQGISGAQKFQIHKAYGSADHLPSAHTCFNQ LDLPEYPSKEHLEERLLLAIHEGSEGFGFG

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G55860		UPL1	ubiquitin-protein ligase 1 (.1...		Lus10032830 [exp]	0	1
AT3G11960			Cleavage and polyadenylation s...		Lus10017295 [exp]	1.0	0.9560
AT3G07160		CALS9, ATGSL10	glucan synthase-like 10 (.1)		Lus10042959 [exp]	2.0	0.9513
AT5G07940			unknown protein		Lus10021162 [exp]	3.2	0.9422
AT3G08850		ATRAPTOR1B, RAP...	HEAT repeat ;WD domain, G-beta...		Lus10025263 [exp]	3.5	0.9433
AT1G67140		SWEETIE	SWEETIE, HEAT repeat-containin...		Lus10017588 [exp]	7.0	0.9382
AT1G79000		ATHAC1, ATHPCAT...	ARABIDOPSIS THALIANA P300/CBP ...		Lus10033321 [exp]	7.1	0.9271
AT3G48060			BAH domain ;TFIIS helical bund...		Lus10033410 [exp]	8.2	0.9177
AT2G33540		CPL3, ATCPL3	C-terminal domain phosphatase-...		Lus10036271 [exp]	8.5	0.9254
AT5G47010		ATUPF1, UPF1, L...	LOW-LEVEL BETA-AMYLASE 1, RNA ...		Lus10011054 [exp]	8.8	0.9259
AT1G79000		ATHAC1, ATHPCAT...	ARABIDOPSIS THALIANA P300/CBP ...		Lus10033319 [exp]	10.4	0.9174

Compare expression of checked genes

Lus10032830 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.