Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G58250 2557 / 0 SAB SABRE, Golgi-body localisation protein domain ;RNA pol II promoter Fmp27 protein domain (.1.2) AT5G49680 2382 / 0 KIP KINKY POLLEN, Golgi-body localisation protein domain ;RNA pol II promoter Fmp27 protein domain (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002604 [exp] 4172 / 0 AT1G58250 2636 / 0.0 SABRE, Golgi-body localisation protein domain ;RNA pol II promoter Fmp27 protein domain (.1.2) Lus10024282 [exp] 1236 / 0 AT1G58250 1054 / 0.0 SABRE, Golgi-body localisation protein domain ;RNA pol II promoter Fmp27 protein domain (.1.2) Lus10003839 [exp] 430 / 3e-136 AT1G58250 333 / 3e-103 SABRE, Golgi-body localisation protein domain ;RNA pol II promoter Fmp27 protein domain (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G110700 [exp] 2873 / 0 AT1G58250 3390 / 0.0 SABRE, Golgi-body localisation protein domain ;RNA pol II promoter Fmp27 protein domain (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF10347 [flax] [poplar] Fmp27_GFWDK RNA pol II promoter Fmp27 protein domain PF10351 [flax] [poplar] Apt1 Golgi-body localisation protein domain
Representative CDS sequence Show only first row Show all	>Lus10032833 pacid=23164835 polypeptide=Lus10032833 locus=Lus10032833.g ID=Lus10032833.BGIv1.0 annot-version=v1.0 ATGGTCATTCGAGAAGAAGTTCCTCGTCGTCCAAAACCACCATCAACTGAATCTAAAGCAATCATGTGGACTTGTACAGTGTCAGCTCCTGAGATGACTG TTTTCCTCTACACTGTCGATGATTTGCCTCTGTATCGTGGGCGTGCACAATCATCACAAGTTTTTGCAAATAACATATCCGTCATGGGAGCTACTGTACA CACGGAACTTAGTGAGCTGAACCTGCATATGGCAGATGAACACCAAGAATGCTTGAAAGAGAGCCCATTCATTGTTGATTCAAATTCAGGTGCAATATTC CACGTACCGAAGTTTATATTGGACTGGGGCAAAAAGGATACTGAACCATCAGAAGAAGATGGTGCTAAGTGTAAATTAGTTCTTTCTATTGATGTCACCG GTACGAGTGTTTATTTGAACTTCAAGCATTTAGAATCACTTGTTTCCACTGCTGTCTCCTTTCAAGTTCTCGCCAAAAGTTTATCTCCGGGTAAAAAGAC AACACAAAGCCGAGGTGGGAAGCCGCCGTCTACATATTCTGGGAAAGGGACTCAAGTTTTGAAATTTAAGCTTGATAAGTGTTGTTTGAATATATCTGGT AATTCAGGGTTGGAAAACACAGTTGTTGGTGATCCCAAGCGTGTCAATTATGGATCACAAGGTGCCCGTGTAGTCATTACTACCTCAGCTGATGGCACAC CACGGACTGCAGAGGTGATATCTACAGTTTCAGGTGATCACAAGAAGGTAGGCTACTCTCTCTCCCTTGACATCATCAACTTCAGCCTGTGTGTAAACAA GGGAAAGCAATCTACTGAAGTGGAAATTGAAAGAGCAAGATCAACATACGAGGAATATTTGGAGGAGCATAAGATGGATGCAAAAGTTACATTATTTGAT ATACAGAAAGCTAAATATGTGCGACGAACTGGTGGTCTTAAAGGGGTGGCTATCTGTTCTCTCTTTAGTGCTATGAATATTGCCCTTGGTTGGGAGCCTG ATTTGCACATCTCACTAGTTGAACTTATGCTGCGATTGAAGGCAGTGGCACACAACCAGAAGCTTAAGGTATGTGCAAATGAATGCATGGGAGATTTCTC TAGCTCTGAAGATGTTGAACATAAGAAAGAAGCCTTGATGGAATCAGAAAATAATACGGATAAACATAAGAAAAAAGAATCCATTTTTGCTGTTGATGTA GAAATGTTGACTATATCTGTTGTGGCTGGGGATGGAGTTGATGTAGTGGTGCAGGTTCATTCAATTTTCTCGGAAAATGCTCGTATAGGGGTGCTTCTTG AAGGACTTCTTCTCGAAATCAATAGGACTAGAGTTGTGAAAAGCAGCAGAATGCAAATTTCCCGTATTCCGAGTGCTTCATCTGATGCGAAGGTGCCAGT TGCGCCCCTCAAATGGGATTGGGTGATTCAAGGGCTCTACATACATATAAACCTTCCTTTCAGGTTGGAATTGCGTGCCATTGATGATGCTTTTGAAGAA ATGATGCGTGCTTTGAAGCTTGTGACAGCTGCTAAGACTCAACTTATATTTCCAATCAAGAAAGAGACCTCAAAGCCGAAAAAGCCTAGTTCAACAAAAT TTGGTTGTGTGAAGTTCTATGTACGTAAACTCATTGCTGATATTGAAGAGGAACCAATTCAGGGTTGGCTTGACGAACACTATCATCTGATGAAGAAGGA GGCATCTGAGATAGCTGTTAGGTTAAAATTTCTCGAAGACTGTATCTCCGAGGCTACAAATTGCTCCAAAGCTTCTGATGGAAACGATTCTAGGGTTGAG AAAAAGTTAACTTATAATGGGGCTGAGATTGATATGCAAGATACTTCGGCCATCCAGAAACTGCAAGATGAAATCTATCAGCAGTCATTTAGATCATATT ATGAGGCATGCCAAAAGTTAGTACCTTCAAAAGGTTCAGGTGCCTGTAAGGAAGGGCTACAAGCTGGTTTTAAGCCAAGCACAACAAGAACTTCACTGCT TTTTATTTCTGCTACAGACTTAGATTTAACCTTATCAATGATTGATGGTGGGGATGATGGGATGATAGAGGTTGTTAGGAAGCTTGATCCAGTAGCTATG GAAAATAATATACCGTTTTCTCGACTCTATGGAAGTAATATTCTCTTGCGAACAGGGTCACTGATTGTTCAGTTGAGAGATTACACGTTTCCTCTTCTAG GAGCTACATCCGGTAAATGTGAAGGTCGTCTGGTACTTGCACAACAGGCCACAAGCTTTCAGCCCCAAGTTCCCCAGGATGTTTTTATTGGAAGATGGAG GAAGGTTTGCATGCTCCGGTCAGCTACTGGTACTACTCCTCCAATGAAATCATACTTTGATTTGCCGTTACACTTCCAGAAAGGAGAGGTGTCTTATGGA GTAAGCTATGAACCACCTTTTGCCGATGTGAGCTTTGCTTTCACTGTGGCACTTCGAAGGGCTAACCTAAGTGTTAGAAATCCAGGACCGTTACTTGTAC CTCCAAAAAAGGAACGTAGCTTACCATGGTGGGATGATATGAGGAACTACATTCACGGGCATATCACCTTGTCCTTTTCTGAAACTCTCTGGCACATTCT TGGTACTACTGATCCTTATGAAAAGCTTGACAAAGCCCAAATAACATCAGGTTACTTGGAGATTCAGCAGTCAGATGGTCGTGTTTTTTTGTCCACAAAG GATTTCAAGGTTTTTATGAGCAGTTTAGATAACCTAGCTCATAGGTGTGGCGTCAAATTTCCTCCTGGTATATCTCAAGCTGCTTTCCTTGAAGCCCCAA CCTTTACTCTTGAAGTGACAATGGACTGGGAATGTGATTCTGACGCCCCAATGAATCATTATCTGTTTGCACTCCCAATTGAAGGAAAACCTCGTGAATT TGTGTTTGATCCTTTTAGATCTACAGCACTGGCCCTGCGGTGGAACTTCTCTATTAGACCACCACCTCTTCCTTGTTCTAACGATTCTGATTCACATGAA AATGTTTCACCAACTGTCACTGTTGGGGCACATGATTTAGCATGGTTAGTCAAGTTCTGGAATTTGAACTATCTTCCACCTAATAAGATACGCACCTTCT CCAGATGGCCTCGTTATGGGGTTCCAAGAATTGTTAGATCTGGTAATTTGGCACTGGACAAGATTATGACGGAGTTTTATCTTCGCATAGATGTTACACC TACTTGCATCAAGAATCGGCCGATGCATGATGATGATCCAGCTAAAGGACTCACTTTTAGTATGTCCAAAGTTAAGTGTGAGGCATGTTATGGTCGGGGT AAACAAAAATTTACTTATGAAAGCATACGTGACCCGCTTGATCTCGTCTACATGGGTATTGATCTCCATGTTCCAAAGGCTATCATCAATAAAGAAGAAT TAACTAGTGTTGAAAAAGTAATACAGGTCAATAGGAAAAATTGTTCAAGTGAAAAGAACAATACAGTGAGCAGTGGCACCGAGAAACACCGTGATTCAGG GTTTATTTTTTCCTGCGATTATTTTACAATCAGAAGGCAATCACCAAAAGCAGATACGTCAAAACTATTGGCATGGCAAGAAGCTGGCAAAAGAAATTCT GAGCCGACAAATCTGAGATCTGAGTTGGATCATGGCAGTGATAGTGATGAGCATGCACGATCGGATCACAGTGATGATGATGATGGTTATAATGTTGTAG TAGCTGACAATTGTCAGCGCATTTTTGTTTACGGTCTCAAGATTTTATGGAATCTTGAAAATAGGGATGCTATTTGCTGTTTTGCTGGTGGCCTGGCTAA AGCATTTGCACCTCCAAGGCCTTCTCCATCTCGGCAGTATACACAGAGTAAACTACTTGAGAAAAGCCAAGCACCCATTGAAGCTGAAGTATCATCCCAA GATGATAACTCTAAGACTGCACCTACTGGACAAAATGATGATCCCACTCCTGAACCTGAAATCGCTGAGACATCTGGAACTACTTCACCTCCATCAAATT CAACTAAAATAGAGAATTTCTCATTTCCTGCTATTGCAGCAAATGCTAGCATGGATGAGGGGGATGGAACTCGTCATTTCATGGTGAATATAATTGAGCC ACAGTTCAATCTTCATTCTGAAGAAGTCAATGGTAGGTTTCTACTTGCTGCTGTCAGTGGGCGTATTTTAGCTCGATCCTTTCATTCAGTCCTCCAAGTT GGACAGGAGATTATCGCACAAGCATTAGGAAATCGAGATGTGCTACTTCCTGAAACTGTACCTGAAATGACATGGACTCGCATGGAGTTGTCAGTGATGT TAGAGCATGTACAGGCTCATGTTGCTCCAACTGATGTTGATCCAGGGGCTGGAGTGCAGTGGCTTCCAAAAATCCGTAAAAGTTCTCCAAAAGTGAAGCG CACTGGTGCTCTCCTAGAGAGAGTTTTTATGCCTTGTGATATGTATTTTAGGTATACAAGACACAAAGGAGGGACCCCAGAGTTGAAGTTCAAACCGTTG AAAGAGCTGACATTCAATACTCATAACATAACAGCGACAATGACATCTCGTCAGTTTCAAGTCATGCTGGGTGTCCTGACAAATCTCCTCTTTGCTCGGC TTCCAAAGCCCAAAAAGAATTGTTTGTCACTTCCTACTGAAGACGAAGAGGACATGGAAGAGGAAGCAGATGCCGTAGTCCCTGATGGTGTTGAAGAGGT GGAACTTGCTAGAATTGACCTGCAAAAAGAGGAGCAACGGCTGAAATTGCTTTTTGATGACATCAGGTCACTTTCTCTAGATTGTGGGGATTCATTAGCC GGCATCGAACAAGACCTGTGGATGATAACTGGAGGAAGATCTGCTTTGGTAGAAGCGATGAAGAAAGAGGTTGTTCATGCAAAAACATCCCGAAAAGAAG CATCTTCATCGTTGAGAGAGGCTCTACAGAAAGCTGCACAGTTGCTTCTGATGGAAAAGGAGAAGAACAAAAGTCCATCCTATGCTATGCGTTTATCTTT GCAGATTAATAAAGTAGTGTGGAGCATGCTGCTAGATGGTAAACCTATTGCAGAAGCTGAGATAAATGATATGATTTTCGATTTTGATCGTGACTATAAG GATGTGGGTGTTGCTCTGTTTACGACCAAGGTTGTGGTTGTGAGGAACTGTCTCCCTAATGCAAAGTCTGATAAGGTTCTGTCGCCATGGAATCCTCCAG CAGAGTGGGGAAAAAAAGTGATGCTGCGGGTGGATGCCAAACAAGGCAAACCAAAGGATGGAAATTCTCGTATTGAACTTTTACAGGTGGAGATCTATCC GCTTAAAATTTATCTGACAGAGAATTTGTACAGAATGATTTGGACATATTTCTTTCCTGAAGAAGAACAAGATTCACAACGTCGTCAGGAAGTGTGGAAA GTTTCAACGACTGCTGCTGTGAAACGTCTTAAAAAGGGGTTTTTTAGCAGTGAAGGTCCATCAAAAACGAGCGGAGGGAAGGAACCTGATTTGCTGTCAA AGCTGACTGGAAGCACGGGAAATATACTGAGGAGGACTTCTTCTTTCGACAGAACATGGGAGGAAACTGTTGCTGAATCTGTTGCTAATGAACTTCTGCA AGCTCATTCCGGTGTTTCGTCCTCAAAGGGCGAGCCTCCTCTTGCCATTGAAGCTGCCCCCAATGATAAAACTAAGTCCAAAGATCCCAAGGCTATCAAG TCTGCTCGGCCATCTCAAGAAGACAAGAAGGTGGTGAAGACGACGACTATCCAAGACGACAAAACATCTCGTCCTCGTAAAGTCATGGAATTCCAGAATA TCAAGATCAGTCAGGTTGAGCTACAAATTACATATGAAAGCTCGAGATTTAATCTGCACGAACTCAAGCTGCTGATGGATACATTTCACCGGGCGGAGTT CACTGGTACTTGGAGGAGGCTCTTCTCCCGAGTTAAGAAACATGTTGTTTGGGGAACTCTGAAATCAGTGACAGGAATGCAGGGTAAGAAATTCAAGGAC AAGGGGCATACCCAGAAAGAGCCTATTGTTGTTCCTCCTGCACTACCAGCTGACAGCGAGCTTAACCTCCTCAGTAGTGATAATGAAGTAGCTGGGAAAT CAGCAGATCAAAACTTATTGAAACGTCCAGCTGATGGAGCAGCAGCTGGTGATGGATTTGTAACTTCTATAAAGGGTCTCTTCAGTAATCAACGCCGCAA GGCAAAGGCATTTGTGTTGAGGACAATGAGAGGTGATGAAAATGAATTCCAGGGTGACTGGAGCGACAGTGAGGCTGATTTTTCCCCCTTTGCTCGTCAG CTCACCATAACCAAGGCTAAGAAGCTTATTAGGAGGCACACCAAGAAATTCAGGTCCAGCAGGAAAGGTACAGCTCAACAGCAAGATTCCTCCGCTCCAT CATCCCCGAGAGAACCTACTGCATTCGAGATTGAGAGTGATTCTTCTAGCGGCTCTTCACCTTCACCTTCCTTTGATGATTTCCCAGAAGGCTTCCAAGT TCATGGCCAAGCCACCTTAATCAAAGATACAGAGACTACTGAGGAGAGCCTTTGA
AA sequence Show only first row Show all	>Lus10032833 pacid=23164835 polypeptide=Lus10032833 locus=Lus10032833.g ID=Lus10032833.BGIv1.0 annot-version=v1.0 MVIREEVPRRPKPPSTESKAIMWTCTVSAPEMTVFLYTVDDLPLYRGRAQSSQVFANNISVMGATVHTELSELNLHMADEHQECLKESPFIVDSNSGAIF HVPKFILDWGKKDTEPSEEDGAKCKLVLSIDVTGTSVYLNFKHLESLVSTAVSFQVLAKSLSPGKKTTQSRGGKPPSTYSGKGTQVLKFKLDKCCLNISG NSGLENTVVGDPKRVNYGSQGARVVITTSADGTPRTAEVISTVSGDHKKVGYSLSLDIINFSLCVNKGKQSTEVEIERARSTYEEYLEEHKMDAKVTLFD IQKAKYVRRTGGLKGVAICSLFSAMNIALGWEPDLHISLVELMLRLKAVAHNQKLKVCANECMGDFSSSEDVEHKKEALMESENNTDKHKKKESIFAVDV EMLTISVVAGDGVDVVVQVHSIFSENARIGVLLEGLLLEINRTRVVKSSRMQISRIPSASSDAKVPVAPLKWDWVIQGLYIHINLPFRLELRAIDDAFEE MMRALKLVTAAKTQLIFPIKKETSKPKKPSSTKFGCVKFYVRKLIADIEEEPIQGWLDEHYHLMKKEASEIAVRLKFLEDCISEATNCSKASDGNDSRVE KKLTYNGAEIDMQDTSAIQKLQDEIYQQSFRSYYEACQKLVPSKGSGACKEGLQAGFKPSTTRTSLLFISATDLDLTLSMIDGGDDGMIEVVRKLDPVAM ENNIPFSRLYGSNILLRTGSLIVQLRDYTFPLLGATSGKCEGRLVLAQQATSFQPQVPQDVFIGRWRKVCMLRSATGTTPPMKSYFDLPLHFQKGEVSYG VSYEPPFADVSFAFTVALRRANLSVRNPGPLLVPPKKERSLPWWDDMRNYIHGHITLSFSETLWHILGTTDPYEKLDKAQITSGYLEIQQSDGRVFLSTK DFKVFMSSLDNLAHRCGVKFPPGISQAAFLEAPTFTLEVTMDWECDSDAPMNHYLFALPIEGKPREFVFDPFRSTALALRWNFSIRPPPLPCSNDSDSHE NVSPTVTVGAHDLAWLVKFWNLNYLPPNKIRTFSRWPRYGVPRIVRSGNLALDKIMTEFYLRIDVTPTCIKNRPMHDDDPAKGLTFSMSKVKCEACYGRG KQKFTYESIRDPLDLVYMGIDLHVPKAIINKEELTSVEKVIQVNRKNCSSEKNNTVSSGTEKHRDSGFIFSCDYFTIRRQSPKADTSKLLAWQEAGKRNS EPTNLRSELDHGSDSDEHARSDHSDDDDGYNVVVADNCQRIFVYGLKILWNLENRDAICCFAGGLAKAFAPPRPSPSRQYTQSKLLEKSQAPIEAEVSSQ DDNSKTAPTGQNDDPTPEPEIAETSGTTSPPSNSTKIENFSFPAIAANASMDEGDGTRHFMVNIIEPQFNLHSEEVNGRFLLAAVSGRILARSFHSVLQV GQEIIAQALGNRDVLLPETVPEMTWTRMELSVMLEHVQAHVAPTDVDPGAGVQWLPKIRKSSPKVKRTGALLERVFMPCDMYFRYTRHKGGTPELKFKPL KELTFNTHNITATMTSRQFQVMLGVLTNLLFARLPKPKKNCLSLPTEDEEDMEEEADAVVPDGVEEVELARIDLQKEEQRLKLLFDDIRSLSLDCGDSLA GIEQDLWMITGGRSALVEAMKKEVVHAKTSRKEASSSLREALQKAAQLLLMEKEKNKSPSYAMRLSLQINKVVWSMLLDGKPIAEAEINDMIFDFDRDYK DVGVALFTTKVVVVRNCLPNAKSDKVLSPWNPPAEWGKKVMLRVDAKQGKPKDGNSRIELLQVEIYPLKIYLTENLYRMIWTYFFPEEEQDSQRRQEVWK VSTTAAVKRLKKGFFSSEGPSKTSGGKEPDLLSKLTGSTGNILRRTSSFDRTWEETVAESVANELLQAHSGVSSSKGEPPLAIEAAPNDKTKSKDPKAIK SARPSQEDKKVVKTTTIQDDKTSRPRKVMEFQNIKISQVELQITYESSRFNLHELKLLMDTFHRAEFTGTWRRLFSRVKKHVVWGTLKSVTGMQGKKFKD KGHTQKEPIVVPPALPADSELNLLSSDNEVAGKSADQNLLKRPADGAAAGDGFVTSIKGLFSNQRRKAKAFVLRTMRGDENEFQGDWSDSEADFSPFARQ LTITKAKKLIRRHTKKFRSSRKGTAQQQDSSAPSSPREPTAFEIESDSSSGSSPSPSFDDFPEGFQVHGQATLIKDTETTEESL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G58250		SAB	SABRE, Golgi-body localisation...		Lus10032833 [exp]	0	1
AT1G15240			Phox-associated domain;Phox-li...		Lus10025785 [exp]	1.4	0.9169
AT5G49430			WD40/YVTN repeat-like-containi...		Lus10016881 [exp]	2.4	0.8994
AT2G36850		CHOR, ATGSL8, A...	CHORUS, glucan synthase-like 8...		Lus10040891 [exp]	2.4	0.9034
AT5G35930			AMP-dependent synthetase and l...		Lus10009528 [exp]	6.0	0.8913
AT5G54090			DNA mismatch repair protein Mu...		Lus10032917 [exp]	9.2	0.8649
AT2G04860			Tetratricopeptide repeat (TPR)...		Lus10032904 [exp]	9.9	0.8191
AT1G55325		MAB2, GCT	MACCHI-BOU 2, GRAND CENTRAL, R...		Lus10016683 [exp]	12.5	0.8696
AT1G73960		TAF2	TBP-associated factor 2 (.1.2)		Lus10036010 [exp]	12.8	0.8858
AT5G25060			RNA recognition motif (RRM)-co...		Lus10026251 [exp]	13.0	0.8530
AT5G58100			unknown protein		Lus10027581 [exp]	14.8	0.8548

Compare expression of checked genes

Lus10032833 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.