Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G58250 286 / 1e-85 SAB SABRE, Golgi-body localisation protein domain ;RNA pol II promoter Fmp27 protein domain (.1.2) AT5G49680 196 / 2e-54 KIP KINKY POLLEN, Golgi-body localisation protein domain ;RNA pol II promoter Fmp27 protein domain (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002603 [exp] 590 / 0 AT1G58250 367 / 4e-114 SABRE, Golgi-body localisation protein domain ;RNA pol II promoter Fmp27 protein domain (.1.2) Lus10024283 [exp] 380 / 8e-129 AT1G58250 320 / 1e-97 SABRE, Golgi-body localisation protein domain ;RNA pol II promoter Fmp27 protein domain (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G110700 [exp] 347 / 2e-106 AT1G58250 3390 / 0.0 SABRE, Golgi-body localisation protein domain ;RNA pol II promoter Fmp27 protein domain (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10032834 pacid=23164847 polypeptide=Lus10032834 locus=Lus10032834.g ID=Lus10032834.BGIv1.0 annot-version=v1.0 ATGGCGGCCTCGGTCGTGAATTTCTTCTATGGATTCCTACTCGTTTGCGCCACATTGTTATTCTTGTTCCTATTTGCTTCTAGGTTGGTGGCATTGATTT TAGGCTGCGTCGTGGGAGCATCACTTAGATTCCGAGTTGGTGGATGGAAGTTTTTAAGAGATGTTGTAGTGAAGTTGAAAAAGGGTCCAGTTGAATCTGT ATCAGTTGGCGAGATAAGAGTTGGGTTACGTCAGCCACTGGTGAAACTCAGTGTTGGTTCTAAGGATCCAAAGTTGCAGTTGTTAATATGTAACCTGGAG ATTGTTTTAAGGCAATCTAGCAAAGGTAGTACCAGCAAGAAAAGTAGAAGTCGAAGTGGCAGATCGAAAACTCCTGGAAGGGGAATTGGGTTACGTCAGC CACTGGTGAAACTCAGTGTTGGTTCTAAGGATCCAAAGTTGCAGTTGTTAATATGTAACCTGGAGATTGTTTTAAGGCAATCTAGCAAAGGTAGTACCAG CAAGAAAAGTAGAAGTCGAAGTGGCAGATCGCAGAAAAATCCTGGAAGGGGAAAGTGGATGGTCTTAGCTAATGTAGCTAAATTTCTGTCAGTCTCTGTG ACAAATTTGGTTGTCAAGACACCCAAAGCTACTGTCGAAGTTAAGGACCTGCAATTGGGTATATCTAAAGATGGCGGTTCTAATCCAAATCTATTCATTA AGCTACACATATTGCCCATTTATGTTCACATGGGCAACCCACGATTGAGTTGTGACCCACTGTTGAACTCTAACAGTAAAGATTCTACTTCAGGGGCAAC AGAAAGGCGTACTGTTCCTTTTAGCTGCGATGAGTTTTTTCTGTCTGTCGAATTTGGTCATGATAGGGAGAAGGGTATAATTATCCAAAATGTTGATATA CGTAGTGGAGAGGTTAGTGTGAACCTGAATGAGGAGCTGCTCTCAAAAAAGAAGAGTTCGTCAGATGCAAATGCTGACAAAGATAAAGGTTCAGTTACTG ATTCTGCAGTGATTAAAGATCCTCCACAGAAAAAGGATTCTCCAGTCGTGGCGATTTCTAAGTACACTGCCATGATTCCGGAAAAGATATGCTTCACGCT TCCAAAACTGGATGTAAGGTTTATGCATAAACAGCATAATCTTTTCGTCAAGAATAGCATAAGGGGCTTCAAATTCAAAAGCATCAAATCACCATCTAGT GAGGATGTGGAAAGCACACGCCTTGACATTGAGGTGGATTTCTCCGAGATGCATCTTCTGAGAGAAGCCGGTCGTTCTGTTGTGGATATATTGAAAGTTG ATCTTATTACCTTCTTCTATGTACCGAAAGAGGCAAGTGCTTTATCTGAGTCGTGGCAGATTACCTTCGGTTGA
AA sequence Show only first row Show all	>Lus10032834 pacid=23164847 polypeptide=Lus10032834 locus=Lus10032834.g ID=Lus10032834.BGIv1.0 annot-version=v1.0 MAASVVNFFYGFLLVCATLLFLFLFASRLVALILGCVVGASLRFRVGGWKFLRDVVVKLKKGPVESVSVGEIRVGLRQPLVKLSVGSKDPKLQLLICNLE IVLRQSSKGSTSKKSRSRSGRSKTPGRGIGLRQPLVKLSVGSKDPKLQLLICNLEIVLRQSSKGSTSKKSRSRSGRSQKNPGRGKWMVLANVAKFLSVSV TNLVVKTPKATVEVKDLQLGISKDGGSNPNLFIKLHILPIYVHMGNPRLSCDPLLNSNSKDSTSGATERRTVPFSCDEFFLSVEFGHDREKGIIIQNVDI RSGEVSVNLNEELLSKKKSSSDANADKDKGSVTDSAVIKDPPQKKDSPVVAISKYTAMIPEKICFTLPKLDVRFMHKQHNLFVKNSIRGFKFKSIKSPSS EDVESTRLDIEVDFSEMHLLREAGRSVVDILKVDLITFFYVPKEASALSESWQITFG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G58250		SAB	SABRE, Golgi-body localisation...		Lus10032834 [exp]	0	1
AT5G49430			WD40/YVTN repeat-like-containi...		Lus10016882 [exp]	2.0	0.9730
AT1G55325		MAB2, GCT	MACCHI-BOU 2, GRAND CENTRAL, R...		Lus10035973 [exp]	2.2	0.9747
AT3G54280		RGD3, ATBTAF1, ...	ROOT GROWTH DEFECTIVE 3, DNA b...		Lus10003868 [exp]	2.4	0.9722
AT3G54280		RGD3, ATBTAF1, ...	ROOT GROWTH DEFECTIVE 3, DNA b...		Lus10013625 [exp]	6.3	0.9698
AT5G49430			WD40/YVTN repeat-like-containi...		Lus10037748 [exp]	7.4	0.9591
AT2G36850		CHOR, ATGSL8, A...	CHORUS, glucan synthase-like 8...		Lus10040892 [exp]	7.5	0.9711
AT1G77800			PHD finger family protein (.1....		Lus10024777 [exp]	9.4	0.9629
AT2G25660		EMB2410	embryo defective 2410 (.1)		Lus10001859 [exp]	10.2	0.9654
AT2G30800		ATVT-1, HVT1	helicase in vascular tissue an...		Lus10001415 [exp]	11.3	0.9571
AT1G21580			Zinc finger C-x8-C-x5-C-x3-H t...		Lus10028660 [exp]	11.6	0.9492

Compare expression of checked genes

Lus10032834 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.