Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G56190 385 / 6e-135 ASNAP, ALPHA-SNAP2 alpha-soluble NSF attachment protein 2 (.1.2) AT3G56450 215 / 7e-67 ALPHA-SNAP1 alpha-soluble NSF attachment protein 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002410 [exp] 559 / 0 AT3G56190 428 / 1e-152 alpha-soluble NSF attachment protein 2 (.1.2) Lus10001258 [exp] 355 / 6e-123 AT3G56190 360 / 7e-126 alpha-soluble NSF attachment protein 2 (.1.2) Lus10012211 [exp] 321 / 4e-101 AT3G08840 1101 / 0.0 D-alanine--D-alanine ligase family (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G181900 [exp] 462 / 4e-165 AT3G56190 366 / 3e-128 alpha-soluble NSF attachment protein 2 (.1.2) Potri.008G075400 [exp] 460 / 2e-164 AT3G56190 360 / 6e-126 alpha-soluble NSF attachment protein 2 (.1.2) Potri.016G129900 [exp] 397 / 2e-139 AT3G56190 359 / 2e-125 alpha-soluble NSF attachment protein 2 (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10032835 pacid=23164791 polypeptide=Lus10032835 locus=Lus10032835.g ID=Lus10032835.BGIv1.0 annot-version=v1.0 ATGGGAGATCAAGTAGGTCGGGCGGAGGAGTTCGAGAAGAAAGCAGACAAGAAGCTTACCGGCTGGGGTTTGTTCGGCTCCAAATTCGAAGACGCCGCCG ATCTCTTCGATAAAGCTGCTAATTCTTACAAACTTGCCAAATCATGGGATAAGGCTGGGTCTACGTACGTCAAGTTGGCAAACTGTCATCTCAAATTGGA CAGTAAACATGAGGCGGCTCAAGCTTATGTTGATGCTGCTCACTGCTATAAGAAAACCTCCACAAGTGACACTGCTCCTAAAGGAGCAGAATCGTCTCTT GGGGATAAGGCTGGGTCTACGTATGTCAAGTTGGCAAACTGTCATCTCAAACTGGACAGCAAACATGAGGCAGCTCAAGCTTACGTTGATGCTGCTCACT GCTATAAGAAAACCTCCACAAGTGAAGCAATTTCTTGCTTAGGTCAGGCGGTGGAGATGTTTTGTGACATTGGAAGAATCAGTATGGCTGCAAGATACAA TAAGGAAATTGCTGAATTGTATGAATCAGAAGCAAACATAGAGAAATCAATTCAGTTTTATGAGAAAGCTGCAGATTTCTTCGAAGGTGAAGAAGTAACA ACTTCTGCCAACCAATGCAAGCAGAAAGTAGCTCAGTTTGCTGCTCAATTGGAACAATACCCGAAGGCGATTGAGATTTATGAAGAAATTGCCCGCCACT CTCTCAGTAATAACTTGCTCAAATATGGGGTTAAAGGTCATCTTCTGAATGCCGGGATTTGCCATCTCTGCAAAGGCGATGTTGTCGCAATTACAAATGC CCTCGAGAAATATCAGGATCTGGATCCGACCTTTTCTGGGACTCGTGAATACAGATTGCTAGCGGATCTTGCTGGTGCTATTGATGAGGAAGACGTTGCG AAGTTTACTGACGCGGTCAAGGAATTTGACAGCATGACCCAACTGGATTCTTGGAAAACAACCCTTCTGTTGAGGGTGAAAGAGAAGATCAAGGCCAAGG AGCTAGAGGAGGATGACCTCACTTAA
AA sequence Show only first row Show all	>Lus10032835 pacid=23164791 polypeptide=Lus10032835 locus=Lus10032835.g ID=Lus10032835.BGIv1.0 annot-version=v1.0 MGDQVGRAEEFEKKADKKLTGWGLFGSKFEDAADLFDKAANSYKLAKSWDKAGSTYVKLANCHLKLDSKHEAAQAYVDAAHCYKKTSTSDTAPKGAESSL GDKAGSTYVKLANCHLKLDSKHEAAQAYVDAAHCYKKTSTSEAISCLGQAVEMFCDIGRISMAARYNKEIAELYESEANIEKSIQFYEKAADFFEGEEVT TSANQCKQKVAQFAAQLEQYPKAIEIYEEIARHSLSNNLLKYGVKGHLLNAGICHLCKGDVVAITNALEKYQDLDPTFSGTREYRLLADLAGAIDEEDVA KFTDAVKEFDSMTQLDSWKTTLLLRVKEKIKAKELEEDDLT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G56190		ASNAP, ALPHA-SN...	alpha-soluble NSF attachment p...		Lus10032835 [exp]	0	1
AT2G37550		ASP1, AGD7	yeast pde1 suppressor 1, ARF-G...		Lus10023766 [exp]	1.4	0.8783
AT3G56190		ASNAP, ALPHA-SN...	alpha-soluble NSF attachment p...		Lus10002410 [exp]	2.4	0.8717
AT2G18040		PIN1AT	"peptidylprolyl cis/trans isom...		Lus10025967 [exp]	3.5	0.8498
AT5G22950		VPS24.1	SNF7 family protein (.1)		Lus10021423 [exp]	5.2	0.8581
AT5G42190		SKP1B, ASK2	Arabidopsis SKP-like 2, E3 ubi...		Lus10017281 [exp]	5.5	0.8464
AT1G75950		UIP1, SKP1A, AT...	UFO INTERACTING PROTEIN 1, ARA...		Lus10013575 [exp]	5.7	0.8342
AT2G24765		ARF3, ARL1, ATA...	ARF-LIKE 1, ADP-ribosylation f...		Lus10026910 [exp]	5.7	0.7782
AT5G21090			Leucine-rich repeat (LRR) fami...		Lus10026751 [exp]	6.9	0.8449
AT5G07120		SNX2b	sorting nexin 2B (.1)		Lus10026403 [exp]	7.0	0.8388
AT2G36320			A20/AN1-like zinc finger famil...		Lus10035603 [exp]	7.7	0.8159

Compare expression of checked genes

Lus10032835 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.