Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G21390 72 / 1e-15 B120 S-locus lectin protein kinase family protein (.1) AT1G61610 64 / 6e-13 S-locus lectin protein kinase family protein (.1) AT1G11300 43 / 2e-05 protein serine/threonine kinases;protein kinases;ATP binding;sugar binding;kinases;carbohydrate binding (.1) AT2G19130 41 / 9e-05 S-locus lectin protein kinase family protein (.1) AT4G00340 40 / 0.0002 RLK4 receptor-like protein kinase 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007600 [exp] 105 / 4e-27 AT1G11300 930 / 0.0 protein serine/threonine kinases;protein kinases;ATP binding;sugar binding;kinases;carbohydrate binding (.1) Lus10006742 [exp] 74 / 3e-16 AT4G21390 800 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10031596 [exp] 45 / 2e-06 AT2G19130 749 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10017247 [exp] 45 / 3e-06 AT1G11340 503 / 2e-166 S-locus lectin protein kinase family protein (.1) Lus10033743 [exp] 43 / 1e-05 AT4G21380 608 / 0.0 receptor kinase 3 (.1) Lus10024064 [exp] 43 / 2e-05 AT1G11340 735 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10005136 [exp] 42 / 6e-05 AT1G11340 471 / 2e-155 S-locus lectin protein kinase family protein (.1) Lus10020080 [exp] 40 / 0.0001 AT4G21390 730 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10018402 [exp] 39 / 0.0003 AT1G11340 691 / 0.0 S-locus lectin protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G027800 [exp] 84 / 5e-20 AT4G21390 941 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G037600 [exp] 79 / 5e-18 AT4G21390 899 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G037300 [exp] 77 / 1e-17 AT4G21390 922 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.004G027900 [exp] 71 / 2e-15 AT4G21390 915 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G039300 [exp] 47 / 8e-07 AT1G11330 829 / 0.0 S-locus lectin protein kinase family protein (.1.2) Potri.011G039400 [exp] 46 / 2e-06 AT1G11330 822 / 0.0 S-locus lectin protein kinase family protein (.1.2) Potri.001G412000 [exp] 42 / 3e-05 AT4G27290 815 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.013G149500 [exp] 42 / 3e-05 AT2G19130 838 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.019G119200 [exp] 42 / 4e-05 AT2G19130 874 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.001G410800 [exp] 40 / 0.0002 AT4G27290 758 / 0.0 S-locus lectin protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00954 [flax] [poplar] S_locus_glycop S-locus glycoprotein domain
Representative CDS sequence Show only first row Show all	>Lus10032836 pacid=23164825 polypeptide=Lus10032836 locus=Lus10032836.g ID=Lus10032836.BGIv1.0 annot-version=v1.0 ATGAGCTCAGGCGGTGGTGAGGATCAGACAGTGGAATGGATTAATCTTTACCGGAGTTTCGAGCATGACGACGTTGATGAATTTCCAGTACAGTTCAAGC TAAGAAGAGAAGAGGACATGAGCATTTACTTAACTTACAACCCGTCGAATTCTACCGCTCTACTCTGGTTCAAAATATGGTACGGAGGGATGAAAGAGCA GCTCAGGTGGAACAAAGGGAGTGGAAATTGGGATGTTATGCAGAGGCAACCGGAGGATGAATGTAAGAGATATAACGAGTGTGGAGAATTCGAGATCTGT TTATCTTTTCAGGAGAGGCGATGGCCACAGTGGCCGTTTTTTAATGCAGCGAAGAACAAAGGAAGTTAA
AA sequence Show only first row Show all	>Lus10032836 pacid=23164825 polypeptide=Lus10032836 locus=Lus10032836.g ID=Lus10032836.BGIv1.0 annot-version=v1.0 MSSGGGEDQTVEWINLYRSFEHDDVDEFPVQFKLRREEDMSIYLTYNPSNSTALLWFKIWYGGMKEQLRWNKGSGNWDVMQRQPEDECKRYNECGEFEIC LSFQERRWPQWPFFNAAKNKGS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G21390		B120	S-locus lectin protein kinase ...		Lus10032836 [exp]	0	1
AT5G17490	GRAS	AtRGL3, RGL3	RGA-like protein 3 (.1)		Lus10002424 [exp]	2.4	1.0000
					Lus10005843 [exp]	3.5	1.0000
					Lus10010827 [exp]	4.6	1.0000
					Lus10022511 [exp]	4.9	1.0000
AT2G36690			2-oxoglutarate (2OG) and Fe(II...		Lus10024231 [exp]	5.5	1.0000
AT1G31550			GDSL-like Lipase/Acylhydrolase...		Lus10026550 [exp]	6.3	0.9902
AT1G15550		ATGA3OX1, GA4	GA REQUIRING 4, ARABIDOPSIS TH...		Lus10013135 [exp]	6.5	1.0000
AT1G01580		FRD1, ATFRO2, F...	FERRIC CHELATE REDUCTASE DEFEC...		Lus10036381 [exp]	7.0	1.0000
AT5G66870	AS2	LBD36, ASL1	LATERAL ORGAN BOUNDARIES DOMAI...		Lus10019633 [exp]	7.3	0.7265
AT1G61330			FBD, F-box and Leucine Rich Re...		Lus10018433 [exp]	7.5	0.8995

Compare expression of checked genes

Lus10032836 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.