Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G47240 944 / 0 CER8, LACS1 LONG-CHAIN ACYL-COA SYNTHASE 1, ECERIFERUM 8, AMP-dependent synthetase and ligase family protein (.1.2) AT4G23850 656 / 0 LACS4 long-chain acyl-CoA synthetase 4, AMP-dependent synthetase and ligase family protein (.1) AT1G64400 635 / 0 LACS3 long-chain acyl-CoA synthetase 3, AMP-dependent synthetase and ligase family protein (.1) AT4G11030 630 / 0 AMP-dependent synthetase and ligase family protein (.1) AT1G49430 594 / 0 LRD2, LACS2 LATERAL ROOT DEVELOPMENT 2, long-chain acyl-CoA synthetase 2 (.1) AT3G05970 419 / 2e-137 LACS6, ATLACS6 long-chain acyl-CoA synthetase 6 (.1) AT5G27600 409 / 1e-133 LACS7, ATLACS7 long-chain acyl-CoA synthetase 7 (.1) AT1G77590 313 / 4e-97 LACS9 long chain acyl-CoA synthetase 9 (.1) AT2G04350 291 / 1e-88 LACS8 long-chain acyl-CoA synthetase 8, AMP-dependent synthetase and ligase family protein (.1.2) AT3G23790 160 / 4e-41 AAE16 acyl activating enzyme 16, AMP-dependent synthetase and ligase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002414 [exp] 1239 / 0 AT2G47240 932 / 0.0 LONG-CHAIN ACYL-COA SYNTHASE 1, ECERIFERUM 8, AMP-dependent synthetase and ligase family protein (.1.2) Lus10032380 [exp] 645 / 0 AT4G23850 1053 / 0.0 long-chain acyl-CoA synthetase 4, AMP-dependent synthetase and ligase family protein (.1) Lus10023832 [exp] 597 / 0 AT1G49430 953 / 0.0 LATERAL ROOT DEVELOPMENT 2, long-chain acyl-CoA synthetase 2 (.1) Lus10021021 [exp] 591 / 0 AT1G49430 955 / 0.0 LATERAL ROOT DEVELOPMENT 2, long-chain acyl-CoA synthetase 2 (.1) Lus10023089 [exp] 583 / 0 AT4G23850 959 / 0.0 long-chain acyl-CoA synthetase 4, AMP-dependent synthetase and ligase family protein (.1) Lus10001830 [exp] 583 / 0 AT4G11030 910 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Lus10029918 [exp] 423 / 4e-139 AT5G27600 1122 / 0.0 long-chain acyl-CoA synthetase 7 (.1) Lus10004483 [exp] 423 / 4e-139 AT5G27600 1121 / 0.0 long-chain acyl-CoA synthetase 7 (.1) Lus10010530 [exp] 417 / 1e-136 AT5G27600 1095 / 0.0 long-chain acyl-CoA synthetase 7 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G192400 [exp] 1032 / 0 AT2G47240 950 / 0.0 LONG-CHAIN ACYL-COA SYNTHASE 1, ECERIFERUM 8, AMP-dependent synthetase and ligase family protein (.1.2) Potri.003G139700 [exp] 653 / 0 AT4G23850 1094 / 0.0 long-chain acyl-CoA synthetase 4, AMP-dependent synthetase and ligase family protein (.1) Potri.001G091900 [exp] 650 / 0 AT4G23850 1101 / 0.0 long-chain acyl-CoA synthetase 4, AMP-dependent synthetase and ligase family protein (.1) Potri.009G109900 [exp] 620 / 0 AT1G49430 951 / 0.0 LATERAL ROOT DEVELOPMENT 2, long-chain acyl-CoA synthetase 2 (.1) Potri.010G090200 [exp] 427 / 1e-140 AT3G05970 1078 / 0.0 long-chain acyl-CoA synthetase 6 (.1) Potri.013G021300 [exp] 411 / 2e-134 AT5G27600 1156 / 0.0 long-chain acyl-CoA synthetase 7 (.1) Potri.002G084100 [exp] 313 / 5e-97 AT1G77590 1079 / 0.0 long chain acyl-CoA synthetase 9 (.1) Potri.005G177500 [exp] 306 / 2e-94 AT1G77590 1058 / 0.0 long chain acyl-CoA synthetase 9 (.1) Potri.014G169400 [exp] 278 / 1e-83 AT2G04350 1051 / 0.0 long-chain acyl-CoA synthetase 8, AMP-dependent synthetase and ligase family protein (.1.2) Potri.014G169600 [exp] 238 / 4e-70 AT2G04350 866 / 0.0 long-chain acyl-CoA synthetase 8, AMP-dependent synthetase and ligase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0378 [flax] [poplar] ANL PF00501 [flax] [poplar] AMP-binding AMP-binding enzyme
Representative CDS sequence Show only first row Show all	>Lus10032840 pacid=23164778 polypeptide=Lus10032840 locus=Lus10032840.g ID=Lus10032840.BGIv1.0 annot-version=v1.0 ATGATGATGAAGGTTTTTGCAGCAGAGGTAGAGCAAGGGAAACAAGGTGAAGATGGGAAACCATCAGTTGGTCCAATTTACCGTAATCTGCTCTCCAAGC ACGATTTCCCTCCGCCTCATCCCAATATCTCTACTGCTTGGGACATTTTCAGTGTATCTGTGAAGAAGCATCCTGACAGTAAAATGCTGGGATGGCGTGA ATTTGTTGATGGGAAGTTTGGACCATATATCTGGAAAACTTATAAGCAAGTGTATGAGGAAGTTATGAACATTGGCTCTGCATTGAGAGCATCTGGTGCT GAACCAGGATGTCGAGTTGGGATTTATGGCGCAAACTGCCCCGAATGGACTGTCGCAATGGAGGCTTGTTCTGCTCACAGTTTTATCTGCGTACCTCTCT ATGATACTCTTGGTCCGAATGCAGTCAACTTTATAATAGATCATGCCGAACTGGATTTCGTTTTCATCCAGCATAAAAAAGTGAAAGATTTACTGGATCC TAACTGCAAAGCTGCTGCACGTCTTAAAGCTGTTGTTTGCTTCACCTCCCTGACAAATGAAGACAAGGATAAAGCAGCAGAGCTAGGGATAAAACCCTAC TCTTGGCAAGAGTTCCAAGTCATGGGGACTGAGAATCCAGCCGACATAGTGCCACCTCAGCAGATGAACATCTGTACTATTATGTACACAAGCGGCACCA GTGGAGATCCCAAAGGTGTTGTGCTGACACATGAGACAGTTGCATATTTCGTAAGGGGTATGGATTTGTTCATGGAACAGTTTGATGACAAGATGACAGT AGATGATGTGTACTTATCGTTCCTACCGCTAGCTCATATCCTTGACCGTGTGATAGAGGAGTACTTCTTCAGCAAAGGTGCTTCAGTTGGCTACTACCAT GGGGATTTAAATGCATTGAGGGATGATTTGATGGAGCTGAAGCCAACATTTTTAGCTGGAGTACCTCGAAAGGAATTTTCAGGTATTAAGAAAGCATTAG ACGAACTTAATCCAATCCGGAAGAGGGTTTTCGATCTTCTTTACAGATACAAGCTAGGTTGGATGAATATGGGTTTGAAGCAAAAGTATGCCTCACCATT GGCTGATCTACTGGCTTTTAGAAAGGTGAAGGCTAAATTGGGAGGTAGACTTCGGCTAATAGTATCAGGAGGAGCACCGTTGAGCTCTGAGGTGGAAGAA TTCTTGAGGGTGACTTGCTGTGCTTTTGTGGTTCAAGGCTATGGACTTACAGAAAGCTGTGGTCCAGCAGCACTGGGTTTCCCAGACGAAATGTGCATGA TGGGAGCTGTGGGAACTCCAGCAGTGTACAACGAGATAAGGCTGGAAGAGGTTACTGATATGGGGTACCACCCACTTGGGAATCCTCCTTGTGGAGAGAT ATGTTTACGAGGAAAGACTATGTTTTCTGGTTATTATAAGAACCCTCAACTCACTACTGAATCCATTCAGGATGGATGGTTTCACACTGGTGACATTGGG GAAATTCAAGGAAATGGGGTTATAAAAGTGATTGACAGGAAGAAGAATCTGATAAAGCTGTCACAAGGAGAGTACATTGCTTTGGAGCATTTGGAGAATG TGTATGGGATCGCTCCCATTATTGACGATATATGGGTGTATGGAGACAGCTTCAAAGCAATGCTGGTAGCAGTAGTTGTGGTTGAGCAAGAAAATGCAAT GAAATGGGCTACTGCTAATGGTGTCATCCCTTCTTCCTTTGATGAACTCTGCTCCCTTGAACAGCTTAGGCAACACATATTGTTGGACCTCAAATCTACT GCTGTCAGAAATAAGCTGAGAGGGTTTGAATACATAAAGGGAGTGATATTGGAATCAAAACCCTTCGACATGGAAAAAGAACTGGTGACTGCAACACTGA AGAAGAAAAGAAACAAGCTGCTCAATTATTACCAGCATCAGATTGATCAACTCTACCACAAGCTGGGTGCTGCAGGTGGAGGACGTGCACCTTGA
AA sequence Show only first row Show all	>Lus10032840 pacid=23164778 polypeptide=Lus10032840 locus=Lus10032840.g ID=Lus10032840.BGIv1.0 annot-version=v1.0 MMMKVFAAEVEQGKQGEDGKPSVGPIYRNLLSKHDFPPPHPNISTAWDIFSVSVKKHPDSKMLGWREFVDGKFGPYIWKTYKQVYEEVMNIGSALRASGA EPGCRVGIYGANCPEWTVAMEACSAHSFICVPLYDTLGPNAVNFIIDHAELDFVFIQHKKVKDLLDPNCKAAARLKAVVCFTSLTNEDKDKAAELGIKPY SWQEFQVMGTENPADIVPPQQMNICTIMYTSGTSGDPKGVVLTHETVAYFVRGMDLFMEQFDDKMTVDDVYLSFLPLAHILDRVIEEYFFSKGASVGYYH GDLNALRDDLMELKPTFLAGVPRKEFSGIKKALDELNPIRKRVFDLLYRYKLGWMNMGLKQKYASPLADLLAFRKVKAKLGGRLRLIVSGGAPLSSEVEE FLRVTCCAFVVQGYGLTESCGPAALGFPDEMCMMGAVGTPAVYNEIRLEEVTDMGYHPLGNPPCGEICLRGKTMFSGYYKNPQLTTESIQDGWFHTGDIG EIQGNGVIKVIDRKKNLIKLSQGEYIALEHLENVYGIAPIIDDIWVYGDSFKAMLVAVVVVEQENAMKWATANGVIPSSFDELCSLEQLRQHILLDLKST AVRNKLRGFEYIKGVILESKPFDMEKELVTATLKKKRNKLLNYYQHQIDQLYHKLGAAGGGRAP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G47240		CER8, LACS1	LONG-CHAIN ACYL-COA SYNTHASE 1...		Lus10032840 [exp]	0	1
AT3G12080		EMB2738	embryo defective 2738, GTP-bin...		Lus10002557 [exp]	1.0	0.9641
AT3G24503		ALDH1A, REF1, A...	REDUCED EPIDERMAL FLUORESCENCE...		Lus10023626 [exp]	2.0	0.9423
AT4G04750			Major facilitator superfamily ...		Lus10033795 [exp]	2.4	0.9370
AT4G36250		ALDH3F1	aldehyde dehydrogenase 3F1 (.1...		Lus10028357 [exp]	3.0	0.9046
AT5G02890			HXXXD-type acyl-transferase fa...		Lus10040156 [exp]	3.9	0.8845
AT1G17840		AtABCG11, WBC11...	DESPERADO, CUTICULAR DEFECT AN...		Lus10018268 [exp]	4.0	0.9243
AT3G21090		ABCG15	ATP-binding cassette G15, ABC-...		Lus10009961 [exp]	4.9	0.9140
AT1G08810	MYB	ATMYB60	myb domain protein 60 (.1.2)		Lus10009522 [exp]	5.7	0.9096
AT4G34240		ALDH3I1	aldehyde dehydrogenase 3I1 (.1...		Lus10015688 [exp]	6.2	0.8914
AT1G17840		AtABCG11, WBC11...	DESPERADO, CUTICULAR DEFECT AN...		Lus10040644 [exp]	6.7	0.9206

Compare expression of checked genes

Lus10032840 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.