Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G24520 859 / 0 AR1, ATR1 ARABIDOPSIS CYTOCHROME REDUCTASE, P450 reductase 1 (.1.2) AT4G30210 743 / 0 AR2, ATR2 P450 reductase 2 (.1.2) AT3G02280 205 / 2e-57 Flavodoxin family protein (.1) AT1G75200 54 / 3e-07 flavodoxin family protein / radical SAM domain-containing protein (.1) AT1G20020 52 / 7e-07 ATLFNR2 ferredoxin-NADP\(+\)-oxidoreductase 2, LEAF FNR 2, ferredoxin-NADP(+)-oxidoreductase 2 (.1), ferredoxin-NADP(+)-oxidoreductase 2 (.2), ferredoxin-NADP(+)-oxidoreductase 2 (.3) AT5G66190 50 / 2e-06 ATLFNR1 ferredoxin-NADP\(+\)-oxidoreductase 1, LEAF FNR 1, ferredoxin-NADP(+)-oxidoreductase 1 (.1), ferredoxin-NADP(+)-oxidoreductase 1 (.2) AT1G30510 46 / 7e-05 ATRFNR2 root FNR 2 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019996 [exp] 741 / 0 AT4G30210 1013 / 0.0 P450 reductase 2 (.1.2) Lus10015525 [exp] 738 / 0 AT4G30210 1009 / 0.0 P450 reductase 2 (.1.2) Lus10006972 [exp] 701 / 0 AT4G30210 983 / 0.0 P450 reductase 2 (.1.2) Lus10002416 [exp] 521 / 0 AT4G24520 474 / 1e-164 ARABIDOPSIS CYTOCHROME REDUCTASE, P450 reductase 1 (.1.2) Lus10025485 [exp] 488 / 6e-168 AT4G30210 681 / 0.0 P450 reductase 2 (.1.2) Lus10025484 [exp] 229 / 3e-70 AT4G30210 318 / 2e-104 P450 reductase 2 (.1.2) Lus10017589 [exp] 146 / 1e-36 AT3G02280 810 / 0.0 Flavodoxin family protein (.1) Lus10028451 [exp] 51 / 2e-06 AT5G66190 596 / 0.0 ferredoxin-NADP\(+\)-oxidoreductase 1, LEAF FNR 1, ferredoxin-NADP(+)-oxidoreductase 1 (.1), ferredoxin-NADP(+)-oxidoreductase 1 (.2) Lus10041904 [exp] 50 / 3e-06 AT5G66190 595 / 0.0 ferredoxin-NADP\(+\)-oxidoreductase 1, LEAF FNR 1, ferredoxin-NADP(+)-oxidoreductase 1 (.1), ferredoxin-NADP(+)-oxidoreductase 1 (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G153800 [exp] 892 / 0 AT4G24520 974 / 0.0 ARABIDOPSIS CYTOCHROME REDUCTASE, P450 reductase 1 (.1.2) Potri.018G092100 [exp] 759 / 0 AT4G30210 984 / 0.0 P450 reductase 2 (.1.2) Potri.006G167200 [exp] 739 / 0 AT4G30210 965 / 0.0 P450 reductase 2 (.1.2) Potri.002G106632 [exp] 377 / 7e-127 AT4G24520 269 / 1e-85 ARABIDOPSIS CYTOCHROME REDUCTASE, P450 reductase 1 (.1.2) Potri.002G106566 [exp] 350 / 2e-116 AT4G24520 459 / 2e-159 ARABIDOPSIS CYTOCHROME REDUCTASE, P450 reductase 1 (.1.2) Potri.004G101100 [exp] 167 / 7e-44 AT3G02280 811 / 0.0 Flavodoxin family protein (.1) Potri.007G057200 [exp] 50 / 5e-06 AT5G66190 592 / 0.0 ferredoxin-NADP\(+\)-oxidoreductase 1, LEAF FNR 1, ferredoxin-NADP(+)-oxidoreductase 1 (.1), ferredoxin-NADP(+)-oxidoreductase 1 (.2) Potri.005G112900 [exp] 49 / 5e-06 AT5G66190 576 / 0.0 ferredoxin-NADP\(+\)-oxidoreductase 1, LEAF FNR 1, ferredoxin-NADP(+)-oxidoreductase 1 (.1), ferredoxin-NADP(+)-oxidoreductase 1 (.2) Potri.001G371900 [exp] 47 / 3e-05 AT4G05390 635 / 0.0 root FNR 1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0076 [flax] [poplar] FAD_Lum_binding PF00667 [flax] [poplar] FAD_binding_1 FAD binding domain CL0091 [flax] [poplar] NAD_Ferredoxin PF00175 [flax] [poplar] NAD_binding_1 Oxidoreductase NAD-binding domain CL0042 [flax] [poplar] Flavoprotein PF00258 [flax] [poplar] Flavodoxin_1 Flavodoxin
Representative CDS sequence Show only first row Show all	>Lus10032842 pacid=23164798 polypeptide=Lus10032842 locus=Lus10032842.g ID=Lus10032842.BGIv1.0 annot-version=v1.0 ATGAGTTCCAGCAGTCAGGATTTAGTGCGATTGGTGGAGTCCTTCCTCGGAGTCTCGCTCGGTGGAGCCTCGTCTGACGTTGTGCTTCTGATCCTCACCA CTTCTCTCGCCGTCATTTTCGGATTGCTGTTTTTCTTGTGGAAGAGATCTTCGGATCGGACCAAAGAGGTCAAGCCGCCGGTTGTGTTTCCTAAACCGTC TTCGCTTCAGGAGGAGGAGGATGACTCCGCCTTGCATGGAAAAACTAAGCTTACTGTCTTCTTCGGTACTCAGACTGGCACTGCTGAAGGTTTTGCCAAG GCTTTAGTCGAGGAGATCAAGGCAAGATATGAAAAGGCGGCTGTCAAAGCTGTTGACCTGGATGATTATGCAAATGATGATGACCAATATGAAGAAAAAA TGAAAAAGGAGACATTGGTATTTTTCATGGTTGCTACCTATGGAGATGGGGAACCAACGGATAATGCTGCAAGGTTTTACAAGTGGTTCACAGAGGAACA TGAAAGAGGCGTTTGGCTTCCACAACTCAGTTATGGTGTTTTTGGCTTGGGTAATCGTCAGTATGAACATTTTAATAAGATTGCAGTAGTCCTTGATGAA GAACTTTCCAAGCAAGGTATGGCTCTGGGTTTTGCTACCCTGTTTACCGTTGCTGGACTAATTTTGTACATAAACTATCTTTCTCTATACACTTCAGATG AGGTCCAGCCTCTTGGTGGCAAGCGTCTCGTTTCAGTTGGTCTAGGTGATGATGATCAATGCATTGAGGATGATTTTACTGCATGGAAAGAACTATTATG GCCTGAGTTGGATCAATTACTCAGAGATGAAGATGATGTGAATTCTGCATCCACACCATATACGGCAGTTATACAAGAATACCGTTTAGTGATTCATGAT CCCTCTGTAACTTCTCACGAGGATAAATTTGGAAACTTAGCTAATGGCAATACCTCATTTGACATTCACCATCCGTGCAGAGTCAACGTTGCTGTTCAAA AGGAGCTGCACTCACCTGAGTCTGACAGGTCCTGCATACATCTAGAGTTTGACATTTCAGGCACTGGTATTGCATATGAAACTGGAGATCATGTGGGCGT TTATGCTGAAAATGGTGAGGAAATTGTTGAAGAAGCAGGGAAGTTATTGGGTCAACCTTTAGATTTGTTGTTCTCTATTCATGCGGATAAAGAAGATGGG TCACCCCTGGCAGCATCTTTGGCACCTCCTTTCCCAGGCCCTTGTACCATGCGTTTGGCACTTGCACGTTATGCAGATATCTTGAACTCTCCTCGGAAGT CTGCTTTGATTGCCTTGGCTGCTCATGCAAGTGAACCGTCTGAGGTAGAGAGGCTTACCTTTTTATCTTCGCCACATGGAAAGGATGAATACTCGCAATG GGTTGTTGCTAGTCAAAGAAGTCTCCTTGAGGTTATGGCCGAGTTTCCATCTGCAAAACCTCCTCTTGGCGTATTTTTTGCAGCTGTGGCTCCTCGACTG CAGCCTCGTTACTATTCAATTTCATCTTCTCCTAGATTTTCTCCTAATAGAGTCCATGTGACCTGTGCTTTAGTAGATGAACCAACTCCAACTGGTAGAA TTCACAAAGGAGTGTGTTCAACGTGGATGGAGAATGCTGTTTCTCTCGAGAAAAGCCAAGATTGTAGCTGGGCTCCCGTTTTCATCAGGACATCTAACTT CAAGTTACCCGCTGATCCTTCAACTCCAATTATTATGGTGGGACCTGGAACAGGGTTGGCACCTTTCCGAGGATTTCTACAGGAAAGAATGGCACTGAAA GAGGAAGGCCATCAGCTTGGTACTGCTTTGCTATTCTTCGGATGCAGAAATAGACGGATGGATTTTATATACGAGGAAGAGCTAAATAGATTTGTGGAAC AAGGAGCACTGAGTGAACTGGTGATTGCCTTGTCAAGGCACCTTGCACACAATTGTCCAAGAACAGGGAGGGTTGGATTCATCCAAGACAGAGTCGATGG TGAAGAAGTTGCAAATGGATGGACGATATCTTAG
AA sequence Show only first row Show all	>Lus10032842 pacid=23164798 polypeptide=Lus10032842 locus=Lus10032842.g ID=Lus10032842.BGIv1.0 annot-version=v1.0 MSSSSQDLVRLVESFLGVSLGGASSDVVLLILTTSLAVIFGLLFFLWKRSSDRTKEVKPPVVFPKPSSLQEEEDDSALHGKTKLTVFFGTQTGTAEGFAK ALVEEIKARYEKAAVKAVDLDDYANDDDQYEEKMKKETLVFFMVATYGDGEPTDNAARFYKWFTEEHERGVWLPQLSYGVFGLGNRQYEHFNKIAVVLDE ELSKQGMALGFATLFTVAGLILYINYLSLYTSDEVQPLGGKRLVSVGLGDDDQCIEDDFTAWKELLWPELDQLLRDEDDVNSASTPYTAVIQEYRLVIHD PSVTSHEDKFGNLANGNTSFDIHHPCRVNVAVQKELHSPESDRSCIHLEFDISGTGIAYETGDHVGVYAENGEEIVEEAGKLLGQPLDLLFSIHADKEDG SPLAASLAPPFPGPCTMRLALARYADILNSPRKSALIALAAHASEPSEVERLTFLSSPHGKDEYSQWVVASQRSLLEVMAEFPSAKPPLGVFFAAVAPRL QPRYYSISSSPRFSPNRVHVTCALVDEPTPTGRIHKGVCSTWMENAVSLEKSQDCSWAPVFIRTSNFKLPADPSTPIIMVGPGTGLAPFRGFLQERMALK EEGHQLGTALLFFGCRNRRMDFIYEEELNRFVEQGALSELVIALSRHLAHNCPRTGRVGFIQDRVDGEEVANGWTIS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G24520		AR1, ATR1	ARABIDOPSIS CYTOCHROME REDUCTA...		Lus10032842 [exp]	0	1
AT2G28520		VHA-A1	vacuolar proton ATPase A1 (.1)		Lus10018129 [exp]	2.0	0.8922
AT1G22730			MA3 domain-containing protein ...		Lus10012204 [exp]	4.2	0.8518
AT3G14270		FAB1B	FORMS APLOID AND BINUCLEATE CE...		Lus10038129 [exp]	4.9	0.8799
AT5G20490		XI-17, ATXIK, X...	MYOSIN XI-17, MYOSIN XI K, Myo...		Lus10017160 [exp]	6.0	0.8614
AT5G06120			ARM repeat superfamily protein...		Lus10024115 [exp]	9.3	0.8829
AT4G12770			Chaperone DnaJ-domain superfam...		Lus10016079 [exp]	12.4	0.8196
AT2G43490			Ypt/Rab-GAP domain of gyp1p su...		Lus10004801 [exp]	14.2	0.7977
AT1G31730			Adaptin family protein (.1)		Lus10037271 [exp]	15.2	0.8534
AT4G12770			Chaperone DnaJ-domain superfam...		Lus10012303 [exp]	18.0	0.8304
AT3G62900			CW-type Zinc Finger (.1)		Lus10009815 [exp]	20.4	0.8630

Compare expression of checked genes

Lus10032842 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.