Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G58210 281 / 2e-80 EMB1674 EMBRYO DEFECTIVE 1674, kinase interacting family protein (.1) AT1G09720 253 / 5e-72 Kinase interacting (KIP1-like) family protein (.1) AT2G22560 235 / 2e-65 Kinase interacting (KIP1-like) family protein (.1) AT5G10500 233 / 3e-65 Kinase interacting (KIP1-like) family protein (.1) AT3G22790 101 / 1e-21 Kinase interacting (KIP1-like) family protein (.1) AT1G03080 99 / 9e-21 kinase interacting (KIP1-like) family protein (.1) AT4G14760 97 / 2e-20 kinase interacting (KIP1-like) family protein (.1) AT4G02710 91 / 1e-18 Kinase interacting (KIP1-like) family protein (.1) AT2G30500 77 / 1e-14 Kinase interacting (KIP1-like) family protein (.1), Kinase interacting (KIP1-like) family protein (.2) AT2G47920 70 / 4e-13 Kinase interacting (KIP1-like) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001866 [exp] 1352 / 0 AT1G58210 281 / 1e-80 EMBRYO DEFECTIVE 1674, kinase interacting family protein (.1) Lus10025717 [exp] 238 / 1e-65 AT2G22560 497 / 6e-158 Kinase interacting (KIP1-like) family protein (.1) Lus10035944 [exp] 234 / 1e-64 AT5G10500 280 / 3e-78 Kinase interacting (KIP1-like) family protein (.1) Lus10002655 [exp] 227 / 4e-62 AT2G22560 511 / 9e-164 Kinase interacting (KIP1-like) family protein (.1) Lus10012730 [exp] 226 / 7e-62 AT2G22560 430 / 9e-134 Kinase interacting (KIP1-like) family protein (.1) Lus10039359 [exp] 103 / 3e-22 AT3G22790 1402 / 0.0 Kinase interacting (KIP1-like) family protein (.1) Lus10014687 [exp] 87 / 3e-17 AT1G03080 938 / 0.0 kinase interacting (KIP1-like) family protein (.1) Lus10006896 [exp] 87 / 4e-17 AT1G03080 927 / 0.0 kinase interacting (KIP1-like) family protein (.1) Lus10022079 [exp] 82 / 1e-15 AT1G03080 1179 / 0.0 kinase interacting (KIP1-like) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G106400 [exp] 340 / 2e-103 AT1G58210 702 / 0.0 EMBRYO DEFECTIVE 1674, kinase interacting family protein (.1) Potri.007G011300 [exp] 256 / 9e-73 AT2G22560 851 / 0.0 Kinase interacting (KIP1-like) family protein (.1) Potri.005G147300 [exp] 250 / 1e-70 AT2G22560 421 / 2e-131 Kinase interacting (KIP1-like) family protein (.1) Potri.010G083300 [exp] 107 / 1e-23 AT3G22790 1306 / 0.0 Kinase interacting (KIP1-like) family protein (.1) Potri.002G049600 [exp] 105 / 9e-23 AT1G03080 1229 / 0.0 kinase interacting (KIP1-like) family protein (.1) Potri.008G156250 [exp] 99 / 3e-21 AT3G22790 519 / 7e-168 Kinase interacting (KIP1-like) family protein (.1) Potri.005G213400 [exp] 100 / 4e-21 AT1G03080 1399 / 0.0 kinase interacting (KIP1-like) family protein (.1) Potri.019G131000 [exp] 84 / 1e-16 AT2G30500 389 / 4e-129 Kinase interacting (KIP1-like) family protein (.1), Kinase interacting (KIP1-like) family protein (.2) Potri.013G158100 [exp] 84 / 2e-16 AT2G30500 384 / 7e-127 Kinase interacting (KIP1-like) family protein (.1), Kinase interacting (KIP1-like) family protein (.2) Potri.002G207700 [exp] 78 / 6e-15 AT2G47920 136 / 2e-37 Kinase interacting (KIP1-like) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07765 [flax] [poplar] KIP1 KIP1-like protein
Representative CDS sequence Show only first row Show all	>Lus10032844 pacid=23164821 polypeptide=Lus10032844 locus=Lus10032844.g ID=Lus10032844.BGIv1.0 annot-version=v1.0 ATGGAGGACAAAGTGGGACAAATGCTATCAATCATCGAAAACGAAGGCGACAGCTTCACCAAGCGAGTCGAAATGTATTATAAGCAACGCCCCGAGCTCA TCAACCACGTCGAAGACTCCTATCGCGCTTACCGCGCACTCGCCGAGCGTTTCGACCATTTATCCAAAGACCTCCAGGCCGCAAATCGCACAATCGCCAC CGTCTTCCCTGACTCCGTCCAATTCTCCGATGACTTCTACTCCGACGATGGAACCCCTTTCACACCTCCCATCCACAACGACGACCCAGTCACGCCTCCG AAATTGCCAAAAAAGATGCTCAGGACACAATCCACAATTCAGGGGCAGAATCAAAGGCCGCCTTCAGCTGCTTTCCTCACACGATCTATAACATCCTTCC CTGGTACGACGCCATCGGTGCTAGGATCATCGGGGCTTACGAAAGAGGAGGCTTTGGAAGAGATGGAGAGGCTGCAGAAGGAGATCCTTTCGCTTCAGAC CGAGAAGGAGTTTGTTGTGAGCATCCGGGAGAGGTGCGATTCCAAATGCGAGAAAATCGAGGATAAAGTCGTTGAGATTCAGGAGAGGATTCAGAAGCTT CAGGATGACTTTGATATCAGCAACGTCCTGGACGACGGGGAAGCAAGAGGGTTGATGGCTGCCACGGCTTTGAAATCATGTAAAGACGCGTTGGTTAAGC TGAAGGAGAAGCAGGATCGGTGCGTTGAGGATGCTAATTTGGAGACGAAGAAGATTGAAAATGTGGTGAGGAAGTTGAGTCATTTGAAAGGGGAGCTATT ATTGGACGCCATTCAAGAGGAAGAGGAAGAGGAAGAAGAAGAAGAAGAGAAAGATGAAGAGAAGAATGAAGAGAAAGAGAAAGAGAAAGAGTCACAGCAG ATATCGTCGGTTGTTACGGTGTTGCAGTTGGCAGACAAGATCGATCAGCTGGTTGAGAAAGTAGCTCATTTGGAAACTGAGGTATCGTCTCAGGGAGCTA TGGTTCGCACTTTGAAATGTGATATCCGGAATCTGGAGATCCGAGTTACTAAGCTGGAAGAGGAGAAGGAAGCTCTCAAGCACGACTCCGGGATTGTCAA CTCCAAATTGAAGGAGCTTGAGGAAGAAGTGAAACGAGTGAAGCTTCTGAACCGGAGCATCCAGGATCAGAACAGCACTCTCCAGGCTGATTTGGAAGAA GCCAACTCTAAAATCCAGCATTTAAATGATCGGTTGAAGACAGTGGAGCTCCGTAATGAACCACCGTACAAGAAGAAGGAAGAAGAAGAAGATGATGAAG AACGTAAAGCAAGTTCGATTACGGCAGAAGAATACTCAAACGCATTGACGAATTACAAGGACGTGAGGAGGAAGCTAGGGGATGTGGAGAAGAAGAGTCA AGATGGCTTCTTCGAATTGTCACTTCAAATCAGGGAGCTTAAGAATGCTATTGCAACAAGAGATGAAGAGATTCAATCTCTTAAGAAAACTGGAAACTAT TCTCCAGGAGGAGTCAAAGTCTCACCTGAAAGCATTGTTAACACGGGGGACTATCCTCTATCTGATCCTCCGTCTTACTGCTCCCCTGATCCAGCCTTCA ACAATAAGTCCAACAACACTACTAGGAAACAAGATGCTGAATCCTCACGGCTACCTGTCTCTGCGGTGGAGCAGAAGATCCGTTCGGAGATCGACAATCT CCTGGAAGATAACCTCGAGTTCTGGCTTAGGTTCAGCACTTCATTTCACCAGATCAGGAAGTTTCAGAACTCGATCCAGGACTTGAAAGGTGAATTGACC ACTGTAATGGACAACAAAAAGGTGGATGGAACAGGGAAACTAATTCCCAACCTCATTCAGGATGCCAGACCCATCTACAAGCACCTGAAAGAGATTCAGA ACGAGCTAACGATATGGCTGGAGAACAACACGGTGCTCAAGGACGAATTCAACGTCAGGTCTAAGTCATTGTCTGGCATCGAGGACGAATTGACCCAACT CGAAACAGAGGCCGGGAGAGAGAAGGAGCTGAGCGATTACCAGGCTGCAAAGTTCCAAGGTGAGCTTATGAACATGAAGCAGGAAGGGAGGAAAGTTGAG GAGGAGCTTCTCATGGGTCTCGATAGGGTTAAGGTATTGAAATTCGATATTGATCAGACAGTGGCGCAGCTGGATAAAGAGATTGGCTTCATTGCTAACC AGAGGTCCTCCAAGCCCAGGATTCCATTGAGGTCCTTCCTCTTTGGTGTCAAGCTCAAAAAGAAGACTTCCATGTTTTCATGTGTTAATCCTCAGCTGGA TAGGCAGTTCAGTGATTTAGCACCCAGACCTCTCGACTAA
AA sequence Show only first row Show all	>Lus10032844 pacid=23164821 polypeptide=Lus10032844 locus=Lus10032844.g ID=Lus10032844.BGIv1.0 annot-version=v1.0 MEDKVGQMLSIIENEGDSFTKRVEMYYKQRPELINHVEDSYRAYRALAERFDHLSKDLQAANRTIATVFPDSVQFSDDFYSDDGTPFTPPIHNDDPVTPP KLPKKMLRTQSTIQGQNQRPPSAAFLTRSITSFPGTTPSVLGSSGLTKEEALEEMERLQKEILSLQTEKEFVVSIRERCDSKCEKIEDKVVEIQERIQKL QDDFDISNVLDDGEARGLMAATALKSCKDALVKLKEKQDRCVEDANLETKKIENVVRKLSHLKGELLLDAIQEEEEEEEEEEEKDEEKNEEKEKEKESQQ ISSVVTVLQLADKIDQLVEKVAHLETEVSSQGAMVRTLKCDIRNLEIRVTKLEEEKEALKHDSGIVNSKLKELEEEVKRVKLLNRSIQDQNSTLQADLEE ANSKIQHLNDRLKTVELRNEPPYKKKEEEEDDEERKASSITAEEYSNALTNYKDVRRKLGDVEKKSQDGFFELSLQIRELKNAIATRDEEIQSLKKTGNY SPGGVKVSPESIVNTGDYPLSDPPSYCSPDPAFNNKSNNTTRKQDAESSRLPVSAVEQKIRSEIDNLLEDNLEFWLRFSTSFHQIRKFQNSIQDLKGELT TVMDNKKVDGTGKLIPNLIQDARPIYKHLKEIQNELTIWLENNTVLKDEFNVRSKSLSGIEDELTQLETEAGREKELSDYQAAKFQGELMNMKQEGRKVE EELLMGLDRVKVLKFDIDQTVAQLDKEIGFIANQRSSKPRIPLRSFLFGVKLKKKTSMFSCVNPQLDRQFSDLAPRPLD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G58210		EMB1674	EMBRYO DEFECTIVE 1674, kinase ...		Lus10032844 [exp]	0	1
AT3G09085			Protein of unknown function (D...		Lus10021128 [exp]	5.6	0.7805
					Lus10009045 [exp]	19.1	0.7410
AT5G59890		ADF4, ATADF4	actin depolymerizing factor 4 ...		Lus10040307 [exp]	19.5	0.7551
AT4G38060			unknown protein		Lus10032845 [exp]	20.9	0.7594
AT2G18660		AtPNP-A, PNP-A,...	plant natriuretic peptide A (....		Lus10031759 [exp]	22.1	0.6482
AT1G67856			RING/U-box superfamily protein...		Lus10011416 [exp]	22.4	0.7335
AT4G04770		ABCI8, ATNAP1, ...	LONG AFTER FR, ARABIDOPSIS THA...		Lus10025788 [exp]	25.6	0.7539
AT5G59890		ADF4, ATADF4	actin depolymerizing factor 4 ...		Lus10023428 [exp]	48.0	0.7272
AT4G11570			Haloacid dehalogenase-like hyd...		Lus10035494 [exp]	57.2	0.7115
AT3G49870		ATARLA1C	ADP-ribosylation factor-like A...		Lus10012090 [exp]	57.4	0.7083

Compare expression of checked genes

Lus10032844 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.