Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G38060 53 / 3e-09 unknown protein AT5G65480 47 / 6e-07 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001865 [exp] 314 / 2e-111 AT4G38060 74 / 3e-17 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G106300 [exp] 223 / 3e-75 AT4G38060 62 / 1e-12 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10032845 pacid=23164850 polypeptide=Lus10032845 locus=Lus10032845.g ID=Lus10032845.BGIv1.0 annot-version=v1.0 ATGGCCGTGGCATTTACAAATCTTTCACAGTGGTTATGGAGTGGAAAGCCTCGAGAGCCCAGAATCACCAATGGATCATCTTTAACTGTGAAGCAGGATG CTGATGTGTTGGAGTCCGATATGCTGAGATTTCCATTGGCCAAGGGTCGAGGTATGGCGTCGTCATCTAGAAGGGTTAAGCGAAAGTGGCATAGCAGGGA AGAAAGGAAAATTGATAGGGAGTATGATGTAGTTCTTGTGCCATCTGATGGTGGTTGTGTTTCTGGTTCGGAATCTGATGATTCTGATTATTCAATTGGA TGGTTGGAGCCTCATGGACCAGATTTCCAGAGTGACCAAGACAATGATGACAGTTTTGCTGTTCTGGTCCCATGTTATGGGCATGTTCAAGATAAAGAGT TTCAGGATTACTCACAAAATGGAATTGGTGCCATTGTCAACATTCCAGACGGCTTTTCTCAAGGTAGCAAGCAATATATAGAACAATGGCTCTCTTTACT CCGGAATGGCTGA
AA sequence Show only first row Show all	>Lus10032845 pacid=23164850 polypeptide=Lus10032845 locus=Lus10032845.g ID=Lus10032845.BGIv1.0 annot-version=v1.0 MAVAFTNLSQWLWSGKPREPRITNGSSLTVKQDADVLESDMLRFPLAKGRGMASSSRRVKRKWHSREERKIDREYDVVLVPSDGGCVSGSESDDSDYSIG WLEPHGPDFQSDQDNDDSFAVLVPCYGHVQDKEFQDYSQNGIGAIVNIPDGFSQGSKQYIEQWLSLLRNG

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G38060			unknown protein		Lus10032845 [exp]	0	1
AT4G29070			Phospholipase A2 family protei...		Lus10035314 [exp]	1.7	0.8840
AT1G77930			Chaperone DnaJ-domain superfam...		Lus10001296 [exp]	2.8	0.8928
AT3G26085			CAAX amino terminal protease f...		Lus10006251 [exp]	3.2	0.8675
AT2G36900		ATMEMB11, MEMB1...	membrin 11 (.1.2)		Lus10005690 [exp]	4.5	0.8704
AT3G49870		ATARLA1C	ADP-ribosylation factor-like A...		Lus10025201 [exp]	4.6	0.8598
AT5G63905			unknown protein		Lus10018677 [exp]	4.7	0.8402
AT4G25670			unknown protein		Lus10039276 [exp]	7.2	0.8887
AT3G49870		ATARLA1C	ADP-ribosylation factor-like A...		Lus10012090 [exp]	7.7	0.8461
AT1G76570			Chlorophyll A-B binding family...		Lus10015235 [exp]	8.9	0.8586
AT1G13990			unknown protein		Lus10036787 [exp]	10.8	0.8533

Compare expression of checked genes

Lus10032845 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.