Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G33300 102 / 2e-23 chromosome-associated kinesin-related (.1) AT5G60930 103 / 3e-23 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G47820 99 / 1e-21 FRA1 FRAGILE FIBER 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT3G50240 74 / 8e-14 KICP-02 ATP binding microtubule motor family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000762 [exp] 104 / 2e-23 AT5G60930 1498 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10000392 [exp] 102 / 1e-22 AT5G60930 1483 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10024805 [exp] 96 / 1e-20 AT5G47820 1599 / 0.0 FRAGILE FIBER 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10018731 [exp] 94 / 4e-20 AT5G47820 1600 / 0.0 FRAGILE FIBER 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10010047 [exp] 91 / 3e-19 AT5G47820 1569 / 0.0 FRAGILE FIBER 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G106100 [exp] 224 / 2e-67 AT5G60930 183 / 2e-49 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.002G106000 [exp] 114 / 1e-26 AT5G60930 1524 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.005G150800 [exp] 107 / 1e-24 AT5G60930 1386 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.014G024700 [exp] 93 / 7e-20 AT5G47820 1580 / 0.0 FRAGILE FIBER 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.002G123500 [exp] 92 / 1e-19 AT5G47820 1639 / 0.0 FRAGILE FIBER 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.007G046700 [exp] 87 / 1e-17 AT5G47820 1422 / 0.0 FRAGILE FIBER 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10032847 pacid=23164830 polypeptide=Lus10032847 locus=Lus10032847.g ID=Lus10032847.BGIv1.0 annot-version=v1.0 ATGAAGAAGGCCAATCTCCGATCGAAGCGCACAAGGGCCAGTGAAACTCCATCGCCTTCTAAGTCCGTCGTCGGCGTGGATAATCAACACCAGAGTGACG ACAATAGGATCCATGATTTGGAAAAAGAGAACGCGGCTCTTAAGTTGGAGGTTGAAGAATTGAAGCTCAAACATGGAAACGATTCCCCTGCTTCAAGTGG AAAAGCTCAGAAGCTTGATGACGGCGCACTGCAGAAGCTGCATGTTCTTGAAGAACAGGTTATGGATTTGAAAAAGAAACTCAATGCACAATCTCAATTT TCAACTCAAAAGCAAAAGACTGCAGGTCGACAGCCTGAGGACGTTATCCAGAGATTGAAGGCCCAAAAGGTCCAACTCCTGTGCAAGATCAAGCTGGACT CCGTGCAGTTCAGACTGTTAAAAGCTTCCTTAGAAAAAGAGGTACTACAAAGGAAACAAGAGGAAGCTTCTGCAGCAACAAGGCGATTAAATGAGTTAAT AGAATTTCGGAAGGCTGCATATCAAAGAAGTTCAGGTGCTAAGAAGGATGGAAGTCCTGGAAGTCAGGGCGTTGAGATTGAGCTTAAAGTCGCAGAAAGA GTGGAAGAGATACGTTCTGATTTTGAGCTTCAAATGGAAGAGATGGCAGAAGAAGTAAGAAAATACGAGGAAGAAGCTGAGATGCTGAGGCAAGAAAATT TTAGATTCTTGTTGCAGGAAAAAGAGGTGGACTGCATGGCCAGAGATACAGAGTTGAAAGACTTGAAAGAAGAAGTATTCAAGCTAAGTACGATGGTGAA TCAAATGCCATTACTAAGGGCACGGCCAGTTCACATCACAAAGCTACAGGATGGAAATCGTGCTGGATTATTCGAGGCGGATTCGGAAACTTTTAACAGT GTGCCGTCAATAACAAAAGGAGGAGGGTGCTGCTCTTGCAGCAAAAAGTCCCTATGCAAGACATCTAAGTGTGAATGCAGAGCTGCTAAAGGCAGCTGTG GGGAACGTTGTGGGTGCACGACTTCAAAGTGCTCAAATAGGAAGGGTTTAGCCAAGAAGGATAGCTCCTCCATAGAATCAGTAATAGCTCAGGAAGTGGT GCATTCTGCAGTGTGTGGAACGAGTTTGACATCTCCTGTAAAGGATCACAAAACTAGTCAGGGGACCATTAGGCAGCCGTTTTCTGAAATTGCGAATGTT CAGGATTCCAAGGTTGAAGAGGAAACCAAGAAGGAGAAGCGAAGCGCTCATGTTGTAGAGGAACATCCAACAATGTCCGTTTCCAACACAGATAGTGTTG AATGCCCGAAAGTAGTTGCAGAGAAAGCTGCTACTCCACCAGATATGTTGAGGAAGTTGACAAGGGCGATGCGGTCGGCCATCATGAAGTGA
AA sequence Show only first row Show all	>Lus10032847 pacid=23164830 polypeptide=Lus10032847 locus=Lus10032847.g ID=Lus10032847.BGIv1.0 annot-version=v1.0 MKKANLRSKRTRASETPSPSKSVVGVDNQHQSDDNRIHDLEKENAALKLEVEELKLKHGNDSPASSGKAQKLDDGALQKLHVLEEQVMDLKKKLNAQSQF STQKQKTAGRQPEDVIQRLKAQKVQLLCKIKLDSVQFRLLKASLEKEVLQRKQEEASAATRRLNELIEFRKAAYQRSSGAKKDGSPGSQGVEIELKVAER VEEIRSDFELQMEEMAEEVRKYEEEAEMLRQENFRFLLQEKEVDCMARDTELKDLKEEVFKLSTMVNQMPLLRARPVHITKLQDGNRAGLFEADSETFNS VPSITKGGGCCSCSKKSLCKTSKCECRAAKGSCGERCGCTTSKCSNRKGLAKKDSSSIESVIAQEVVHSAVCGTSLTSPVKDHKTSQGTIRQPFSEIANV QDSKVEEETKKEKRSAHVVEEHPTMSVSNTDSVECPKVVAEKAATPPDMLRKLTRAMRSAIMK

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G60930			P-loop containing nucleoside t...		Lus10032847 [exp]	0	1
AT2G36200			P-loop containing nucleoside t...		Lus10014216 [exp]	11.3	0.9113
AT5G11860		SSP5	SCP1-like small phosphatase 5 ...		Lus10037018 [exp]	13.4	0.8904
AT3G44050			P-loop containing nucleoside t...		Lus10008438 [exp]	14.6	0.9029
AT5G60930			P-loop containing nucleoside t...		Lus10000392 [exp]	18.7	0.8929
AT1G72250			Di-glucose binding protein wit...		Lus10013714 [exp]	21.8	0.9001
AT4G38070	bHLH		basic helix-loop-helix (bHLH) ...		Lus10025718 [exp]	22.9	0.8971
AT3G54750			unknown protein		Lus10015991 [exp]	24.3	0.8189
AT3G24495		ATMSH7, MSH7, M...	MUTS HOMOLOG 6-2, ARABIDOPSIS ...		Lus10017724 [exp]	24.4	0.8867
AT2G33560		BUBR1	BUB1-related (BUB1: budding un...		Lus10030714 [exp]	28.6	0.8927
AT4G32730	MYB	ATMYB3R-1, PC-M...	C-MYB-LIKE TRANSCRIPTION FACTO...		Lus10011687 [exp]	29.7	0.8912

Compare expression of checked genes

Lus10032847 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.