Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G67380 550 / 0 ATCKA1, CKA1 casein kinase alpha 1 (.1.2) AT3G50000 548 / 0 ATCKA2, CKA2 "casein kinase II, alpha chain 2", casein kinase II, alpha chain 2 (.1) AT2G23070 527 / 0 Protein kinase superfamily protein (.1) AT2G23080 521 / 0 CKA3 casein kinase II, alpha chain 3, Protein kinase superfamily protein (.1.2) AT1G20930 132 / 1e-35 CDKB2;2 cyclin-dependent kinase B2;2 (.1) AT1G76540 131 / 2e-35 CDKB2;1 cyclin-dependent kinase B2;1 (.1) AT3G48750 130 / 2e-35 CDKA1, CDC2A, CDKA;1, CDC2AAT, CDK2 cell division control 2 (.1) AT2G38620 127 / 5e-34 CDKB1;2 cyclin-dependent kinase B1;2 (.1.2) AT3G54180 124 / 5e-33 CDC2B, CDKB1;1 CDC2-LIKE GENE, cyclin-dependent kinase B1;1 (.1) AT3G61160 123 / 1e-31 Protein kinase superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019288 [exp] 543 / 0 AT5G67380 623 / 0.0 casein kinase alpha 1 (.1.2) Lus10011534 [exp] 541 / 0 AT3G50000 620 / 0.0 "casein kinase II, alpha chain 2", casein kinase II, alpha chain 2 (.1) Lus10011526 [exp] 523 / 0 AT2G23070 632 / 0.0 Protein kinase superfamily protein (.1) Lus10019296 [exp] 522 / 0 AT2G23070 631 / 0.0 Protein kinase superfamily protein (.1) Lus10040593 [exp] 132 / 1e-35 AT1G76540 534 / 0.0 cyclin-dependent kinase B2;1 (.1) Lus10021611 [exp] 128 / 2e-34 AT1G76540 531 / 0.0 cyclin-dependent kinase B2;1 (.1) Lus10018850 [exp] 123 / 2e-31 AT4G00720 747 / 0.0 SHAGGY-LIKE PROTEIN KINASE THETA, shaggy-like protein kinase 32 (.1) Lus10013088 [exp] 120 / 1e-30 AT5G14640 741 / 0.0 shaggy-like kinase 13 (.1) Lus10022254 [exp] 120 / 2e-30 AT5G14640 738 / 0.0 shaggy-like kinase 13 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G052800 [exp] 549 / 0 AT5G67380 632 / 0.0 casein kinase alpha 1 (.1.2) Potri.005G145900 [exp] 546 / 0 AT5G67380 620 / 0.0 casein kinase alpha 1 (.1.2) Potri.007G054100 [exp] 524 / 0 AT2G23070 638 / 0.0 Protein kinase superfamily protein (.1) Potri.005G146000 [exp] 513 / 0 AT2G23070 625 / 0.0 Protein kinase superfamily protein (.1) Potri.002G003400 [exp] 137 / 8e-38 AT1G76540 553 / 0.0 cyclin-dependent kinase B2;1 (.1) Potri.005G257500 [exp] 130 / 4e-35 AT1G76540 552 / 0.0 cyclin-dependent kinase B2;1 (.1) Potri.016G142800 [exp] 130 / 4e-35 AT2G38620 536 / 0.0 cyclin-dependent kinase B1;2 (.1.2) Potri.004G133500 [exp] 127 / 7e-34 AT3G48750 540 / 0.0 cell division control 2 (.1) Potri.006G113200 [exp] 127 / 1e-33 AT2G38620 545 / 0.0 cyclin-dependent kinase B1;2 (.1.2) Potri.013G100100 [exp] 126 / 7e-32 AT1G71530 722 / 0.0 Protein kinase superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10032849 pacid=23164838 polypeptide=Lus10032849 locus=Lus10032849.g ID=Lus10032849.BGIv1.0 annot-version=v1.0 ATGTCTTTAGCTCGAGTCTACGCTGACATCAATGTTCATCGTCCTAGAGACTACTGGGACTATGAGTCACTCACTCTTCACTGGGGTGAACAGGATAACT ATGAGGTTGTTCGGAAGGTTGGAAGAGGCAAATACAGTGAGGTGTTTGAAGGAATTAATGTCACTAACAATAAAAAATGCATTATCAAAATCCTCAAGCC TGTCAAGAAAAAGAAGATAAAGAGAGAGATTAAGATACTGCAGAACCTTTGTGGAGGACAGAATATAGTGAAGCTGCTTGATGTTGTCAGAGATCAGCAC TCAAAAACTCCTAGCTTAATTTTTGAACACGTGAACAGTATAGATTTTAAAGTCCTATACCCTACCTTCACTGACTATGACATTTGCTACTATATACATG AGCTTCTCAAGGCCCTGGATCACTGTCATTCACAGGGCATAATGCACAGAGATGTTAAACCTCACAATGTAATTATTGACCATGAACTGCGCAAATTGCG ATTGATTGACTGGGGGCTGGCTGAGTTTTACCATCCTGGCAAAGAATATAATGTCAGAGTAGCTTCTAGGTACTTTAAGGGACCCGAACTTCTTGTTGAT TTACTACACTATGACTATTCTCTGGACATGTGGAGTTTAGGTTGTATGTTCGCCGGAATGATTTTCAGGAAGGAACCTTTCTTTTATGGTCATGACAATA ATGACCAGCTTGTCAAAATTGCCAAGGTTCTTGGTACAGATGAATTGCATGTATATTTAAACAAGTATAACTTGGAGCTGGATCCTAACCTTGAGTCTCT TGTTGGCAGGCACAGCAGGAAACCTTGGTCCAGATTCATAAATCCTAATAATCAACATCTAGTTTCCGCGGAGGCCATTGATTTTCTCGACAGACTACTT CGCTACGACCATCAAGACAGGTTTACGGCTAAAGAAGCAATGGCACATCCCTACTTTCATATAGTCAGAGCAGCGGAGGATAGCCGGATTCCGTCGTCTG TCTCCATTGCAGGCTCGTCATCGTTATTTTCATCTAGTCAGAGCAGCAGAGAATAG
AA sequence Show only first row Show all	>Lus10032849 pacid=23164838 polypeptide=Lus10032849 locus=Lus10032849.g ID=Lus10032849.BGIv1.0 annot-version=v1.0 MSLARVYADINVHRPRDYWDYESLTLHWGEQDNYEVVRKVGRGKYSEVFEGINVTNNKKCIIKILKPVKKKKIKREIKILQNLCGGQNIVKLLDVVRDQH SKTPSLIFEHVNSIDFKVLYPTFTDYDICYYIHELLKALDHCHSQGIMHRDVKPHNVIIDHELRKLRLIDWGLAEFYHPGKEYNVRVASRYFKGPELLVD LLHYDYSLDMWSLGCMFAGMIFRKEPFFYGHDNNDQLVKIAKVLGTDELHVYLNKYNLELDPNLESLVGRHSRKPWSRFINPNNQHLVSAEAIDFLDRLL RYDHQDRFTAKEAMAHPYFHIVRAAEDSRIPSSVSIAGSSSLFSSSQSSRE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G67380		ATCKA1, CKA1	casein kinase alpha 1 (.1.2)		Lus10032849 [exp]	0	1
AT5G15340			Pentatricopeptide repeat (PPR)...		Lus10033775 [exp]	1.7	0.9213
AT1G15030			Protein of unknown function (D...		Lus10033747 [exp]	2.4	0.9133
AT1G04610		YUC3	YUCCA 3 (.1)		Lus10032609 [exp]	2.8	0.9110
AT4G33060			Cyclophilin-like peptidyl-prol...		Lus10026441 [exp]	3.9	0.9073
AT4G28830			S-adenosyl-L-methionine-depend...		Lus10011107 [exp]	5.3	0.9209
AT3G27670		RST1	RESURRECTION1, ARM repeat supe...		Lus10010374 [exp]	6.3	0.9014
AT5G12230		MED19A	unknown protein		Lus10008738 [exp]	9.3	0.8754
AT5G37290			ARM repeat superfamily protein...		Lus10008435 [exp]	9.5	0.9068
AT5G12230		MED19A	unknown protein		Lus10017449 [exp]	10.4	0.8397
AT1G59520		CW7	CW7 (.1.2.3)		Lus10012485 [exp]	11.0	0.8753

Compare expression of checked genes

Lus10032849 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.