Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G65860 524 / 0 ankyrin repeat family protein (.1.2) AT4G19150 48 / 3e-06 Ankyrin repeat family protein (.1.2) AT2G31800 47 / 8e-06 Integrin-linked protein kinase family (.1) AT5G14230 47 / 2e-05 unknown protein AT3G59830 45 / 4e-05 Integrin-linked protein kinase family (.1) AT2G43850 44 / 0.0001 Integrin-linked protein kinase family (.1.2) AT5G07840 42 / 0.0002 PIA1 phytochrome interacting ankyrin-repeat protein 1, Ankyrin repeat family protein (.1) AT5G12320 39 / 0.0008 ankyrin repeat family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036990 [exp] 54 / 7e-08 AT5G14230 510 / 5e-174 unknown protein Lus10015811 [exp] 54 / 8e-08 AT5G14230 727 / 0.0 unknown protein Lus10033896 [exp] 51 / 6e-07 AT3G23280 294 / 7e-96 XB3 ortholog 5 in Arabidopsis thaliana (.1.2) Lus10036033 [exp] 47 / 2e-06 AT5G12320 186 / 2e-61 ankyrin repeat family protein (.1) Lus10003260 [exp] 47 / 1e-05 AT3G04710 587 / 0.0 tetratricopeptide repeat 10, ankyrin repeat family protein (.1.2.3) Lus10006559 [exp] 46 / 2e-05 AT3G04710 581 / 0.0 tetratricopeptide repeat 10, ankyrin repeat family protein (.1.2.3) Lus10009696 [exp] 45 / 2e-05 AT5G12320 184 / 7e-61 ankyrin repeat family protein (.1) Lus10001414 [exp] 45 / 3e-05 AT4G19150 245 / 9e-82 Ankyrin repeat family protein (.1.2) Lus10001605 [exp] 45 / 7e-05 AT4G38130 833 / 0.0 ARABIDOPSIS HISTONE DEACETYLASE 19, ARABIDOPSIS HISTONE DEACETYLASE 1, histone deacetylase 1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G019000 [exp] 561 / 0 AT5G65860 530 / 0.0 ankyrin repeat family protein (.1.2) Potri.010G057300 [exp] 57 / 7e-09 AT5G14230 843 / 0.0 unknown protein Potri.001G333600 [exp] 52 / 2e-07 AT5G14230 975 / 0.0 unknown protein Potri.005G054800 [exp] 47 / 1e-05 AT3G04710 611 / 0.0 tetratricopeptide repeat 10, ankyrin repeat family protein (.1.2.3) Potri.010G185200 [exp] 46 / 2e-05 AT2G03430 76 / 3e-15 Ankyrin repeat family protein (.1) Potri.009G070700 [exp] 44 / 4e-05 AT5G12320 197 / 6e-66 ankyrin repeat family protein (.1) Potri.010G070800 [exp] 45 / 5e-05 AT3G23280 502 / 2e-176 XB3 ortholog 5 in Arabidopsis thaliana (.1.2) Potri.013G062000 [exp] 44 / 0.0001 AT2G03430 94 / 2e-21 Ankyrin repeat family protein (.1) Potri.013G042300 [exp] 43 / 0.0002 AT3G04710 619 / 0.0 tetratricopeptide repeat 10, ankyrin repeat family protein (.1.2.3) Potri.007G142100 [exp] 43 / 0.0003 AT2G43850 726 / 0.0 Integrin-linked protein kinase family (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0465 [flax] [poplar] Ank PF00023 [flax] [poplar] Ank Ankyrin repeat
Representative CDS sequence Show only first row Show all	>Lus10032850 pacid=23164797 polypeptide=Lus10032850 locus=Lus10032850.g ID=Lus10032850.BGIv1.0 annot-version=v1.0 ATGGCCGACACCCACGAAATCCTCTTCCAGGCTGTGACGAACGGCGACTTGGACAAAGTCAAATCGCTGATTGATTCCGGACCGGACGTCTCCTGCTTCG ACGGAGATGGCTTAACTCCTCTTATGCACGCTGCAAAGCTCGGTCACGGAGACGTCGTGAAGGCCCTGCTCGAGGCTGGCGCGCCGTGGAATGCTCTCTC TCCTTCCAATCTCTCTGCCGGAGACTTCGCCATGGATGCTGGCCATCAGGAAGCGTTCGAAATTCTACTGAATGCTGGAATTCAGTCTGAATTGATTCTT GGAACCATAGCTAGGAAAGAAAATGACAAGGGAAATTCGAATGGGGATTACTTGGAAGATAGGGTTAGTTTCAGTGAAGATAAACTGTTGGACTCTGAAA GTAAGGGCGTGATGATGGCTTGGGAGAAGCCACTGATGGAGGCACACGCAAAAGCTGTATGTTCAGGTGGTGGTGACATCCTGAATATTGGATTTGGAAT GGGTCTTGTGGATACTGCCATTCAACAGTACTCACCTACATCACACACAATCATTGAGGCTCACCCAGAGGTTCATGATCGGATGATTCGTGCTGGCTGG TCCGAGAAGGAGAATGTGAAGATTGTATTAGGTCGTTGGCAAGATGTTCTTCCCCAGCTAGGAACTTATGATGGTATTTTCTTTGATACGTACGGGGAGT ATTACGAAGACTTGAGGGAATTCCATCAACACCTTCCCAAGTTACTAAAACCTGGTGGGATTTATTCCTTCTTCAATGGGTTATGCGGAAGTAATGCCTT CTTCCATGTAGTTTACTGCAACTTAGTCTCCCTAGAACTGGAGAATCTGGGATATTCGACACAGTTAATTCCCTTACCGGTTAAGGATTGTTTAGCAAAA GATGTATGGGAAGGTGTGAGACACAAGTACTGGCAGCTTGATACCTACTATCTTCCAGTCTGTCAGTCTAACCAGGATTCTGAATGA
AA sequence Show only first row Show all	>Lus10032850 pacid=23164797 polypeptide=Lus10032850 locus=Lus10032850.g ID=Lus10032850.BGIv1.0 annot-version=v1.0 MADTHEILFQAVTNGDLDKVKSLIDSGPDVSCFDGDGLTPLMHAAKLGHGDVVKALLEAGAPWNALSPSNLSAGDFAMDAGHQEAFEILLNAGIQSELIL GTIARKENDKGNSNGDYLEDRVSFSEDKLLDSESKGVMMAWEKPLMEAHAKAVCSGGGDILNIGFGMGLVDTAIQQYSPTSHTIIEAHPEVHDRMIRAGW SEKENVKIVLGRWQDVLPQLGTYDGIFFDTYGEYYEDLREFHQHLPKLLKPGGIYSFFNGLCGSNAFFHVVYCNLVSLELENLGYSTQLIPLPVKDCLAK DVWEGVRHKYWQLDTYYLPVCQSNQDSE

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G65860			ankyrin repeat family protein ...		Lus10032850 [exp]	0	1
AT2G36620		RPL24A	ribosomal protein L24 (.1)		Lus10032198 [exp]	2.0	0.8697
AT1G26880			Ribosomal protein L34e superfa...		Lus10036750 [exp]	3.0	0.8954
AT5G60340			P-loop containing nucleoside t...		Lus10040792 [exp]	3.7	0.8398
AT3G23390			Zinc-binding ribosomal protein...		Lus10013436 [exp]	4.5	0.8860
AT5G02960			Ribosomal protein S12/S23 fami...		Lus10023172 [exp]	4.6	0.8703
AT1G76010			Alba DNA/RNA-binding protein (...		Lus10017255 [exp]	6.0	0.8658
AT2G20450			Ribosomal protein L14 (.1)		Lus10024918 [exp]	6.7	0.8668
AT2G18196			Heavy metal transport/detoxifi...		Lus10010147 [exp]	7.0	0.8650
AT5G27470			seryl-tRNA synthetase / serine...		Lus10017409 [exp]	8.1	0.8466
AT1G53850		PAE1, ATPAE1	ARABIDOPSIS 20S PROTEASOME ALP...		Lus10003936 [exp]	9.5	0.8361

Compare expression of checked genes

Lus10032850 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.