Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G24220 524 / 0 5[beta]-StR, 5[beta]-StR, 5[beta]-StR, 5[beta]-StR, 5[beta]-StR, 5[beta]-StR, AWI31, VEP1 VEIN PATTERNING 1, Δ4,5-steroid-5[beta]-reductase, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT5G58750 210 / 3e-64 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018705 [exp] 632 / 0 AT4G24220 590 / 0.0 VEIN PATTERNING 1, Δ4,5-steroid-5[beta]-reductase, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10018704 [exp] 484 / 2e-171 AT4G24220 530 / 0.0 VEIN PATTERNING 1, Δ4,5-steroid-5[beta]-reductase, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10000076 [exp] 464 / 2e-165 AT4G24220 394 / 3e-138 VEIN PATTERNING 1, Δ4,5-steroid-5[beta]-reductase, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10039689 [exp] 279 / 6e-91 AT4G24220 305 / 4e-101 VEIN PATTERNING 1, Δ4,5-steroid-5[beta]-reductase, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10039686 [exp] 278 / 1e-90 AT4G24220 302 / 5e-100 VEIN PATTERNING 1, Δ4,5-steroid-5[beta]-reductase, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10039687 [exp] 255 / 1e-81 AT4G24220 271 / 8e-88 VEIN PATTERNING 1, Δ4,5-steroid-5[beta]-reductase, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10040675 [exp] 225 / 5e-70 AT5G58750 421 / 1e-146 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10024788 [exp] 88 / 1e-21 ND 81 / 6e-24 Lus10039688 [exp] 89 / 2e-20 AT4G24220 97 / 1e-23 VEIN PATTERNING 1, Δ4,5-steroid-5[beta]-reductase, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G019300 [exp] 563 / 0 AT4G24220 560 / 0.0 VEIN PATTERNING 1, Δ4,5-steroid-5[beta]-reductase, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.003G134500 [exp] 553 / 0 AT4G24220 550 / 0.0 VEIN PATTERNING 1, Δ4,5-steroid-5[beta]-reductase, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.014G019600 [exp] 552 / 0 AT4G24220 550 / 0.0 VEIN PATTERNING 1, Δ4,5-steroid-5[beta]-reductase, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.014G019400 [exp] 542 / 0 AT4G24220 544 / 0.0 VEIN PATTERNING 1, Δ4,5-steroid-5[beta]-reductase, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.002G120600 [exp] 541 / 0 AT4G24220 577 / 0.0 VEIN PATTERNING 1, Δ4,5-steroid-5[beta]-reductase, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.014G019700 [exp] 537 / 0 AT4G24220 556 / 0.0 VEIN PATTERNING 1, Δ4,5-steroid-5[beta]-reductase, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.014G019500 [exp] 537 / 0 AT4G24220 541 / 0.0 VEIN PATTERNING 1, Δ4,5-steroid-5[beta]-reductase, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.002G120700 [exp] 532 / 0 AT4G24220 569 / 0.0 VEIN PATTERNING 1, Δ4,5-steroid-5[beta]-reductase, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.017G030700 [exp] 288 / 1e-94 AT4G24220 292 / 2e-96 VEIN PATTERNING 1, Δ4,5-steroid-5[beta]-reductase, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.017G030600 [exp] 288 / 1e-94 AT4G24220 271 / 4e-88 VEIN PATTERNING 1, Δ4,5-steroid-5[beta]-reductase, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10032854 pacid=23164784 polypeptide=Lus10032854 locus=Lus10032854.g ID=Lus10032854.BGIv1.0 annot-version=v1.0 ATGAGCTGGTGGTGGGCTGGCGCCGTTGGAGCCGCTAAGAAGAAGATCGACGAAGAAGATCCGCCGCCGCCGACGTACCAGAGCGTCGCCCTAGTGGTGG GAGTCACCGGTATCGTGGGCAACAGCCTAGCCGAGATCCTCCCTCTCTCCGACACCCCCGGCGGCCCATGGAAGGTTTACGGCGTCGCTCGCCGGCCCCG ACCCAGTTGGAACGCCGATCACCCTGTTGACTACATCCAGTGCGACATCTCCGACCGAAACGACGCCGAATCCAAGCTCTCTCACCTCTCCGATGTCACC CACATTTTCTACGTCACCTGGGCTAATCGCCCCACCGAGGCCGAAAACTGCGAGGTCAACGGCCGAATGTTCCGGAACCTTCTGAACGTCGTCGTCCCCA ACTCCCCCAACCTCCAGCACATCTGCCTCCAGACGGGCGGCAAGCATTACCTCGGATCTTTCGAATCATTCGGTAAAATCGAACCCCATGATCCGCCTTT CGCCGAGGATTTGCCCAGATTGGAGGACGTGCCCAATTTCTACTACACATTGGAAGACATCCTGTTCCAAGAGACGGAGAAGAAGGAAGGGCTGACGTGG TCGGTACACCGTCCTGATCAGATTTGGGGGTTTTCCCCATACAGTTTGATGAACACGATTGGGACGCTCTCCGTGTACGCCGCCATCTGTAAACACGAGG GTTTGCCTTTGATTTTCCCTGGGAGGAAAGCTGCTTGGAATTGCTACGCGAATTCGTCGGATGCTGACTTGGTCGCGGAGCATCAGATATGGGCTGCGGT GGATCGTTATGCCAAGAATGAGGCGTTTAATATTTTGAATGGGGATGTGTTCAAGTGGAAGCATTTATGGAAGACTTTGGCGGAGCAGTTTGAGATAGAG AATTACGGGTTTCAGGAAGATGAAGAGAAGAGGGTGAGTTTGGTGGAGATGATGAAGGATAAAGGTCCAGTTTGGGAAGAGATTGTGAAGCAGAATCAGC TTGAGCCTACCAAGTTGGAGGATGTTGGAAATTGGTGGTTTGTGGATTTGTTGTTTCGTGGAGATGCTGTGCTTGCAAGCATGAACAAGAGCAAAGAGCA TGGATTCTTGGGGTTTAGGAATTCCAACACATCCTTTATTTCCTGGATTGACAGGATGAAGGGTTACAAGATTGTACCCTGA
AA sequence Show only first row Show all	>Lus10032854 pacid=23164784 polypeptide=Lus10032854 locus=Lus10032854.g ID=Lus10032854.BGIv1.0 annot-version=v1.0 MSWWWAGAVGAAKKKIDEEDPPPPTYQSVALVVGVTGIVGNSLAEILPLSDTPGGPWKVYGVARRPRPSWNADHPVDYIQCDISDRNDAESKLSHLSDVT HIFYVTWANRPTEAENCEVNGRMFRNLLNVVVPNSPNLQHICLQTGGKHYLGSFESFGKIEPHDPPFAEDLPRLEDVPNFYYTLEDILFQETEKKEGLTW SVHRPDQIWGFSPYSLMNTIGTLSVYAAICKHEGLPLIFPGRKAAWNCYANSSDADLVAEHQIWAAVDRYAKNEAFNILNGDVFKWKHLWKTLAEQFEIE NYGFQEDEEKRVSLVEMMKDKGPVWEEIVKQNQLEPTKLEDVGNWWFVDLLFRGDAVLASMNKSKEHGFLGFRNSNTSFISWIDRMKGYKIVP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G24220		5[beta]-StR, 5[...	VEIN PATTERNING 1, Δ4,5-s...		Lus10032854 [exp]	0	1
AT5G09520		PELPK2	Pro-Glu-Leu|Ile|Val-Pro-Lys 2,...		Lus10018647 [exp]	1.7	0.8937
					Lus10018648 [exp]	3.2	0.8876
					Lus10010492 [exp]	4.5	0.8544
AT1G14390			Leucine-rich repeat protein ki...		Lus10030785 [exp]	5.7	0.7730
AT5G08580			Calcium-binding EF hand family...		Lus10017370 [exp]	6.7	0.8652
AT3G10980		SAG20, WI12, AT...	PLAC8 family protein (.1)		Lus10010219 [exp]	7.1	0.7780
AT4G35320			unknown protein		Lus10022985 [exp]	8.1	0.8285
AT4G35320			unknown protein		Lus10001621 [exp]	9.5	0.8478
AT3G07470			Protein of unknown function, D...		Lus10039620 [exp]	11.0	0.8129
AT1G44224			ECA1 gametogenesis related fam...		Lus10039882 [exp]	11.5	0.8265

Compare expression of checked genes

Lus10032854 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.