Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G74970 254 / 1e-86 TWN3, RPS9 ribosomal protein S9 (.1) AT3G49080 77 / 2e-16 Ribosomal protein S5 domain 2-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016295 [exp] 332 / 3e-117 AT1G74970 276 / 3e-95 ribosomal protein S9 (.1) Lus10038852 [exp] 81 / 6e-18 AT3G49080 370 / 9e-126 Ribosomal protein S5 domain 2-like superfamily protein (.1) Lus10014970 [exp] 0 / 1 AT3G49080 274 / 8e-95 Ribosomal protein S5 domain 2-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G039600 [exp] 264 / 1e-90 AT1G74970 268 / 4e-92 ribosomal protein S9 (.1) Potri.002G132200 [exp] 254 / 8e-87 AT1G74970 267 / 1e-91 ribosomal protein S9 (.1) Potri.012G144700 [exp] 77 / 2e-16 AT3G49080 353 / 5e-119 Ribosomal protein S5 domain 2-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0329 [flax] [poplar] S5 PF00380 [flax] [poplar] Ribosomal_S9 Ribosomal protein S9/S16
Representative CDS sequence Show only first row Show all	>Lus10032862 pacid=23164805 polypeptide=Lus10032862 locus=Lus10032862.g ID=Lus10032862.BGIv1.0 annot-version=v1.0 ATGTCAGTCTCCTCCCTCTCCTCGTCTTTCTCTTCTCTCTCTTTGTCATCCCAACTTTCTCAGAAACCAAACACCAAGCTGCTTCCCCTCACCAACAAGT CCCCTTCTCTTTCACACTCCCGCAACTACCTCACCCTCAGGGTCTCCGCCGCCGTCTCCTCGCCGTCAGAGCCCCTCAAGGAGCTCGTCAAGTCTAGACT CCCCGGTGGATTCGCCGCCCAAACTATCATTGGCACCGGTCGCCGGAAGTGCTCCATCGCTCGAGTCGTCCTCCAGGAAGGCACTGGCCAAGTCATAATC AATTACCGTGATGCCAAGGACTATCTGCAGGGGAATCCATTGTGGCTACAGTACGTGAAGGTCCCATTGGTGACATTGGGATACGAGAGTAGCTACGATG TGTTCGTGAAAGCTCACGGAGGGGGGCTCTCTGGTCAGGCCCAAGCAATATCGCTGGGAGTTGCTCGGGCATTGCTGAAGGTGAGTGACAGCCACAGACC ACCACTGAAACAGGAAGGGCTTTTGACCAGGGACTCTAGGATTGTGGAGAGGAAGAAGGCTGGTCTCAAGAAAGCTCGCAAGGCTCCCCAGTTCTCTAAG CGTTAA
AA sequence Show only first row Show all	>Lus10032862 pacid=23164805 polypeptide=Lus10032862 locus=Lus10032862.g ID=Lus10032862.BGIv1.0 annot-version=v1.0 MSVSSLSSSFSSLSLSSQLSQKPNTKLLPLTNKSPSLSHSRNYLTLRVSAAVSSPSEPLKELVKSRLPGGFAAQTIIGTGRRKCSIARVVLQEGTGQVII NYRDAKDYLQGNPLWLQYVKVPLVTLGYESSYDVFVKAHGGGLSGQAQAISLGVARALLKVSDSHRPPLKQEGLLTRDSRIVERKKAGLKKARKAPQFSK R

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G74970		TWN3, RPS9	ribosomal protein S9 (.1)		Lus10032862 [exp]	0	1
AT5G21920		ATYLMG2	YGGT family protein (.1.2)		Lus10009622 [exp]	1.4	0.9231
AT3G15900			unknown protein		Lus10023126 [exp]	4.5	0.9134
AT5G65220			Ribosomal L29 family protein ...		Lus10019653 [exp]	7.2	0.9338
AT3G09210		PTAC13	plastid transcriptionally acti...		Lus10027750 [exp]	10.5	0.9027
AT5G40950		RPL27	ribosomal protein large subuni...		Lus10012538 [exp]	19.1	0.9147
AT2G40490		HEME2	Uroporphyrinogen decarboxylase...		Lus10030544 [exp]	20.2	0.9004
AT3G26060		ATPRXQ ,ATPRX Q	peroxiredoxin Q, Thioredoxin s...		Lus10033424 [exp]	23.8	0.9045
AT5G14320		EMB3137	EMBRYO DEFECTIVE 3137, Ribosom...		Lus10018192 [exp]	25.0	0.9077
AT3G24590		PLSP1	plastidic type i signal peptid...		Lus10023651 [exp]	26.8	0.8649
AT1G79850		PDE347, CS17, P...	PLASTID RIBOSOMAL SMALL SUBUNI...		Lus10035863 [exp]	27.3	0.9033

Compare expression of checked genes

Lus10032862 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.