Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G42660 530 / 0 Protein of unknown function (DUF616) (.1) AT2G02910 216 / 2e-64 Protein of unknown function (DUF616) (.1) AT1G34550 214 / 2e-61 EMB2756 EMBRYO DEFECTIVE 2756, Protein of unknown function (DUF616) (.1) AT4G09630 202 / 2e-57 Protein of unknown function (DUF616) (.1) AT4G38500 194 / 1e-55 Protein of unknown function (DUF616) (.1) AT1G53040 192 / 7e-55 Protein of unknown function (DUF616) (.1), Protein of unknown function (DUF616) (.2) AT1G28240 191 / 3e-54 Protein of unknown function (DUF616) (.1) AT5G46220 125 / 4e-31 Protein of unknown function (DUF616) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016294 [exp] 797 / 0 AT5G42660 603 / 0.0 Protein of unknown function (DUF616) (.1) Lus10032311 [exp] 600 / 0 AT5G42660 574 / 0.0 Protein of unknown function (DUF616) (.1) Lus10024684 [exp] 468 / 1e-147 AT5G42660 445 / 2e-139 Protein of unknown function (DUF616) (.1) Lus10036741 [exp] 211 / 2e-62 AT2G02910 545 / 0.0 Protein of unknown function (DUF616) (.1) Lus10037186 [exp] 210 / 1e-60 AT2G02910 546 / 0.0 Protein of unknown function (DUF616) (.1) Lus10028702 [exp] 206 / 9e-59 AT1G34550 750 / 0.0 EMBRYO DEFECTIVE 2756, Protein of unknown function (DUF616) (.1) Lus10009419 [exp] 206 / 9e-59 AT1G34550 753 / 0.0 EMBRYO DEFECTIVE 2756, Protein of unknown function (DUF616) (.1) Lus10024001 [exp] 193 / 3e-55 AT4G38500 771 / 0.0 Protein of unknown function (DUF616) (.1) Lus10011175 [exp] 193 / 1e-54 AT1G28240 730 / 0.0 Protein of unknown function (DUF616) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G149900 [exp] 548 / 0 AT5G42660 633 / 0.0 Protein of unknown function (DUF616) (.1) Potri.010G094000 [exp] 219 / 1e-65 AT2G02910 565 / 0.0 Protein of unknown function (DUF616) (.1) Potri.019G084100 [exp] 211 / 2e-60 AT1G34550 707 / 0.0 EMBRYO DEFECTIVE 2756, Protein of unknown function (DUF616) (.1) Potri.013G113700 [exp] 203 / 2e-57 AT1G34550 708 / 0.0 EMBRYO DEFECTIVE 2756, Protein of unknown function (DUF616) (.1) Potri.009G138000 [exp] 197 / 5e-57 AT4G38500 725 / 0.0 Protein of unknown function (DUF616) (.1) Potri.001G399800 [exp] 196 / 3e-56 AT1G53040 574 / 0.0 Protein of unknown function (DUF616) (.1), Protein of unknown function (DUF616) (.2) Potri.004G044100 [exp] 194 / 3e-55 AT1G28240 779 / 0.0 Protein of unknown function (DUF616) (.1) Potri.004G177600 [exp] 192 / 4e-55 AT4G38500 750 / 0.0 Protein of unknown function (DUF616) (.1) Potri.011G053000 [exp] 192 / 2e-54 AT1G28240 775 / 0.0 Protein of unknown function (DUF616) (.1) Potri.011G119300 [exp] 188 / 3e-53 AT1G53040 588 / 0.0 Protein of unknown function (DUF616) (.1), Protein of unknown function (DUF616) (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04765 [flax] [poplar] DUF616 Protein of unknown function (DUF616)
Representative CDS sequence Show only first row Show all	>Lus10032863 pacid=23164788 polypeptide=Lus10032863 locus=Lus10032863.g ID=Lus10032863.BGIv1.0 annot-version=v1.0 ATGCCGTCTCCTTTAGTTTTCAGCAACAACAGCTTTTCGATTACTGTCGCCGACGATGATTCCGACGACCTCACTCGGAAGCGAGCCCGGGTCCGTAATA AACGCAACAAGTCTGTGAGCCACCGCGTAAAGCACCATTTCTCCAGGCGCTTCGTTAGGTTTCTCTCCAGGTACTGGGTTTTACTCATCTTCCTTCTCGC CGTCGTTCTACTCTTCTTCGAGATCTCCAAAATCGGCAAGGAACCAACCTTCCACAAAGTCGATCCCAAGAAACCGTCTCATTCCAATTTGAATCGGATG GATCGCGTTACCAGAATGGTTGGCGGTGTCAGGGAACCTTGCTTAAACCTCTTACCGCCGGATGAACTTGAACTTCTTGATATTCCCAATGGCGGCGAGG TCGACAGTCCTGTTAAGAACGTCATCTACTTGTCCGAGAAAGATGTGCCGGAGTCTGTACAGAACGCCACTAGCAAGTCGAAAAAAATCAAATTCAATTC GTTCAGTGGATACCCGAGTCTTGAAGAGAGGGACAGAAGTTTTGTGGCGAACAAGACTGCGGCTATACATTGTGGATTCTATAGTGAAGATGGAGGCTTT AAGATATCTGAAGCAGATAAGAGTTACATGGCAATGTGCGAATTGGTGGTTTCTACGTGTGCCTTTGGTGGTGGAGATAATCTTTACCAGCCTATTGGAA TGTCGAATGCATCACTTCACAAGGTCTGCTATGTTGCATTTTGGGATGAAATCACTCTTGCTGCTCAGGATACGGCAGGGCACACGATTGGGGAGGACAG TCTTATTGGGAAGTGGCGCATCGTCCTCGTGCAGGATCTTCCATTTGTTGATCAAAGATTAAATGGTAAAATCCCAAAGACGGTGTTTTCCTATTCTTAC TCTGGAGTCGTGTCTGCGAGATTCAATAAACTGAAGTATGGAACTAAAATTGACTACTTTCAGATGCTGGGGCATCGCCTGTTTCCTAATGCAAAGTACT CCATATGGGTAGACTCAAAGTCTCAGTTCAGGAGGGACCCGTTGGGTGTTCTGGAAGCTCTTCTCTGGCGCACGAATTCGGTATTAGCAATCTCTGAGCA TGGAGCTCGTAGCAGTTTGTATGATGAGGCCAAAGCCGTGGTGAAGAAAAACAAAGCCAGACCAGAGGAAGTTGAGGTACAATTGACCCAGTACAAAAAT GATGGTATGCCTGAAGACAAGAGATTGAACGGAAATAAAGCTCTGAATGAAGCTTCAATAATAGTGAGGGAGCACACGGCGGTGAGCAACCTGATGATGT GCCTATGGTTCAACGAAGCTGTACGTTTCACATCAAGAGACCAACTAAGCTTCCCTTACGTCCTATGGCGCCTGAAAGTTGTTGCAAAAATCAACATGTT CCCGGTTTGCACTCGCAAGGATCTTGTTAATAGTATTGGCCATTTACGCAAGCCCAAGCCTTTAATTAAAAGAACCATTCCCACGGTTAATGATGATGAT GATGAGGCTTGA
AA sequence Show only first row Show all	>Lus10032863 pacid=23164788 polypeptide=Lus10032863 locus=Lus10032863.g ID=Lus10032863.BGIv1.0 annot-version=v1.0 MPSPLVFSNNSFSITVADDDSDDLTRKRARVRNKRNKSVSHRVKHHFSRRFVRFLSRYWVLLIFLLAVVLLFFEISKIGKEPTFHKVDPKKPSHSNLNRM DRVTRMVGGVREPCLNLLPPDELELLDIPNGGEVDSPVKNVIYLSEKDVPESVQNATSKSKKIKFNSFSGYPSLEERDRSFVANKTAAIHCGFYSEDGGF KISEADKSYMAMCELVVSTCAFGGGDNLYQPIGMSNASLHKVCYVAFWDEITLAAQDTAGHTIGEDSLIGKWRIVLVQDLPFVDQRLNGKIPKTVFSYSY SGVVSARFNKLKYGTKIDYFQMLGHRLFPNAKYSIWVDSKSQFRRDPLGVLEALLWRTNSVLAISEHGARSSLYDEAKAVVKKNKARPEEVEVQLTQYKN DGMPEDKRLNGNKALNEASIIVREHTAVSNLMMCLWFNEAVRFTSRDQLSFPYVLWRLKVVAKINMFPVCTRKDLVNSIGHLRKPKPLIKRTIPTVNDDD DEA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G42660			Protein of unknown function (D...		Lus10032863 [exp]	0	1
AT1G15550		ATGA3OX1, GA4	GA REQUIRING 4, ARABIDOPSIS TH...		Lus10011476 [exp]	2.6	0.7993
AT2G24190		SDR2	short-chain dehydrogenase/redu...		Lus10019546 [exp]	3.7	0.7449
AT1G31850			S-adenosyl-L-methionine-depend...		Lus10033277 [exp]	4.2	0.7982
AT5G60920		COB	COBRA-like extracellular glyco...		Lus10021144 [exp]	5.2	0.7787
AT4G36750			Quinone reductase family prote...		Lus10011292 [exp]	5.7	0.7481
AT4G34260		AXY8, FUC95A	ALTERED XYLOGLUCAN 8, 1,2-alph...		Lus10013884 [exp]	15.0	0.7746
AT1G12040		LRX1	leucine-rich repeat/extensin 1...		Lus10040566 [exp]	17.3	0.7468
AT3G62830		ATUXS2, UXS2, A...	UDP-GLUCURONIC ACID DECARBOXYL...		Lus10006510 [exp]	17.7	0.7468
AT3G49720			unknown protein		Lus10011564 [exp]	17.9	0.7544
AT4G12730		FLA2	FASCICLIN-like arabinogalactan...		Lus10006391 [exp]	24.0	0.7764

Compare expression of checked genes

Lus10032863 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.