Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G19390 144 / 2e-41 Uncharacterised protein family (UPF0114) (.1) AT5G13720 124 / 1e-33 Uncharacterised protein family (UPF0114) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018793 [exp] 261 / 4e-87 AT4G19390 169 / 1e-51 Uncharacterised protein family (UPF0114) (.1) Lus10037258 [exp] 125 / 2e-34 AT4G19390 245 / 3e-81 Uncharacterised protein family (UPF0114) (.1) Lus10029480 [exp] 126 / 5e-34 AT5G13720 328 / 2e-113 Uncharacterised protein family (UPF0114) (.1) Lus10019743 [exp] 122 / 5e-33 AT5G13720 340 / 6e-119 Uncharacterised protein family (UPF0114) (.1) Lus10016380 [exp] 118 / 5e-31 AT5G13720 317 / 2e-108 Uncharacterised protein family (UPF0114) (.1) Lus10035674 [exp] 119 / 1e-29 AT5G36930 410 / 1e-121 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G039000 [exp] 229 / 6e-74 AT4G19390 163 / 1e-48 Uncharacterised protein family (UPF0114) (.1) Potri.004G234600 [exp] 127 / 9e-35 AT4G19390 246 / 1e-81 Uncharacterised protein family (UPF0114) (.1) Potri.009G057300 [exp] 124 / 1e-33 AT5G13720 308 / 8e-106 Uncharacterised protein family (UPF0114) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03350 [flax] [poplar] UPF0114 Uncharacterized protein family, UPF0114
Representative CDS sequence Show only first row Show all	>Lus10032866 pacid=23164809 polypeptide=Lus10032866 locus=Lus10032866.g ID=Lus10032866.BGIv1.0 annot-version=v1.0 ATGTCTAGTGCAAGGCTGCTGCGTGCTTCCTCACAAGCTCCTGGACTCCACCATTTCTCTACTACTACTACTACTACTACTGCCTCTTCCTCTTTCTCTG TTAGAAATAATGGAGACACCAAGTTACTACTTAACAATCCTGACAACAGCCGGAAATCGCACTCTTCGGTTGTCACAGTTGTTACAACTTCATCCGAGAC TTTCACGACTACTTCCGATCCGACGGAGCCATGGGATTGTGGTGATCTAGATTTGGTTTCTTTGGTTAAGTTGGTGATGGTCACATTCAAGCCTGTTGCT GCTGTGGAAAGTAAGCAAGTTGATGATGATGATGAGGTGGTGAAGAATAATCGGTTTCAGATGTTGATTGAGAGAGCTATATTTGACTGCCGATTCTTTG CTCTTTTAGCTGTTGCCGGCTCCTTGCTTGGCTCTGTTTTATGCTTCCTCGAGGGATGCTTACTTGTGGTGGAGTCCTACTTTCATTACTTGCAAACATT CTCACGAGCTTTGGATCAAGGACACATGATGAAGCTGCTTATTCAAGCCATGGATATGTTCTTGGTGGGAACTGCTATGCTTGTATTTGGAGTTGGGATA CATGCCATGTTTGTAGGCTCCAAGGACCACAAACAACAACAGACTTGGCTTCCGCCTTCAAACTTATTTGGCCTCTTCCACTTGAAGAAACTTCCAGCAT GGGTGGAATCTGAATCAATATCACAGGCCAAGTCCAAAATCGGACACGCAATTCTGATGATAATTAAAGTAGGACTTGTTGACAAATTCAACAATGTCCC TCTCGTCACCAGTTTCGATCTCGCCTGTTTCGCAGCAGCCATCCTTGTTTCTTCCGCGTCCACCTTCCTCCTATCAAAACTCTACAACAGTCATTAA
AA sequence Show only first row Show all	>Lus10032866 pacid=23164809 polypeptide=Lus10032866 locus=Lus10032866.g ID=Lus10032866.BGIv1.0 annot-version=v1.0 MSSARLLRASSQAPGLHHFSTTTTTTTASSSFSVRNNGDTKLLLNNPDNSRKSHSSVVTVVTTSSETFTTTSDPTEPWDCGDLDLVSLVKLVMVTFKPVA AVESKQVDDDDEVVKNNRFQMLIERAIFDCRFFALLAVAGSLLGSVLCFLEGCLLVVESYFHYLQTFSRALDQGHMMKLLIQAMDMFLVGTAMLVFGVGI HAMFVGSKDHKQQQTWLPPSNLFGLFHLKKLPAWVESESISQAKSKIGHAILMIIKVGLVDKFNNVPLVTSFDLACFAAAILVSSASTFLLSKLYNSH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G19390			Uncharacterised protein family...		Lus10032866 [exp]	0	1
AT3G60580	C2H2ZnF		C2H2-like zinc finger protein ...		Lus10015888 [exp]	6.6	0.7851
AT1G76430		PHT1;9	phosphate transporter 1;9 (.1)		Lus10016042 [exp]	11.0	0.7752
AT2G29350		SAG13	senescence-associated gene 13 ...		Lus10040737 [exp]	14.7	0.7498
AT1G54215			proline-rich family protein (....		Lus10015652 [exp]	18.7	0.7080
AT5G02910			F-box/RNI-like superfamily pro...		Lus10034290 [exp]	19.6	0.6513
					Lus10011661 [exp]	28.9	0.7301
AT4G39010		ATGH9B18	glycosyl hydrolase 9B18 (.1)		Lus10018077 [exp]	30.9	0.6633
					Lus10017946 [exp]	31.0	0.6695
					Lus10035412 [exp]	31.3	0.7313
AT5G10530			Concanavalin A-like lectin pro...		Lus10007073 [exp]	34.6	0.7311

Compare expression of checked genes

Lus10032866 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.