Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G26490 577 / 0 Transducin/WD40 repeat-like superfamily protein (.1) AT3G18950 464 / 1e-161 Transducin/WD40 repeat-like superfamily protein (.1) AT3G50390 457 / 5e-159 Transducin/WD40 repeat-like superfamily protein (.1) AT1G49450 454 / 1e-157 Transducin/WD40 repeat-like superfamily protein (.1) AT4G34380 454 / 2e-157 Transducin/WD40 repeat-like superfamily protein (.1) AT1G47610 434 / 1e-151 Transducin/WD40 repeat-like superfamily protein (.1) AT1G24130 254 / 1e-80 Transducin/WD40 repeat-like superfamily protein (.1) AT5G50120 240 / 3e-75 Transducin/WD40 repeat-like superfamily protein (.1) AT1G24530 237 / 1e-73 Transducin/WD40 repeat-like superfamily protein (.1) AT3G51930 231 / 2e-71 Transducin/WD40 repeat-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016289 [exp] 793 / 0 AT2G26490 597 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10011655 [exp] 702 / 0 AT2G26490 604 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10022475 [exp] 487 / 2e-171 AT3G50390 536 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10012036 [exp] 387 / 2e-131 AT3G18950 463 / 1e-160 Transducin/WD40 repeat-like superfamily protein (.1) Lus10016779 [exp] 389 / 3e-131 AT3G50390 435 / 2e-148 Transducin/WD40 repeat-like superfamily protein (.1) Lus10027944 [exp] 381 / 1e-129 AT3G18950 459 / 7e-160 Transducin/WD40 repeat-like superfamily protein (.1) Lus10021014 [exp] 374 / 1e-126 AT3G18950 423 / 3e-145 Transducin/WD40 repeat-like superfamily protein (.1) Lus10023836 [exp] 366 / 2e-122 AT3G18950 431 / 3e-147 Transducin/WD40 repeat-like superfamily protein (.1) Lus10034117 [exp] 252 / 1e-79 AT5G50120 391 / 1e-134 Transducin/WD40 repeat-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G130400 [exp] 610 / 0 AT2G26490 632 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.014G038400 [exp] 606 / 0 AT2G26490 631 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.009G109500 [exp] 519 / 0 AT3G18950 555 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.007G035100 [exp] 501 / 3e-176 AT3G50390 514 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.004G148400 [exp] 498 / 3e-175 AT3G18950 539 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.005G131100 [exp] 501 / 4e-175 AT3G50390 535 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.015G070900 [exp] 259 / 1e-82 AT5G50120 398 / 2e-137 Transducin/WD40 repeat-like superfamily protein (.1) Potri.012G076000 [exp] 255 / 6e-81 AT5G50120 417 / 5e-145 Transducin/WD40 repeat-like superfamily protein (.1) Potri.006G239600 [exp] 246 / 1e-76 AT3G50390 280 / 4e-89 Transducin/WD40 repeat-like superfamily protein (.1) Potri.010G050900 [exp] 244 / 2e-76 AT1G24530 483 / 5e-170 Transducin/WD40 repeat-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF00400 [flax] [poplar] WD40 WD domain, G-beta repeat
Representative CDS sequence Show only first row Show all	>Lus10032868 pacid=23164790 polypeptide=Lus10032868 locus=Lus10032868.g ID=Lus10032868.BGIv1.0 annot-version=v1.0 ATGTTGAGCAACGATGAAGACTTCACCGCCTATTGGAACAGCAGTGCCTCTGCCTCCGCTGCAAGCCCCGGTATGTCGTTCGACCCAAACCGACTCAGCT GCGAAGGATCCCCCATGACCATGTCCCCTTGGAACCAAACATCGCCGTTCGAGAAAGCATCCTTCATGAGATACGATGATGCTTCCATCACGGGCCAACA GAACGCCCTAATCGGGTCGTTGGTCCGCGAGGAAGGCCACATTTATTCCCTAGCAGCTTCCAAGGATTTGCTATACACTGGATCCGACAGCAAGAACATC CGGGTCTGGAAAAGCCTCAAGGAATTCACGGCCTTCAAATCAAGCAGTCGCTTAGTCAAAGCCATCATACTTTCTAGCGACAAGATCTTTACGGGTCATC AAGACGGTAAAATCCGGGTCTGGAAAGCTTCCCCTAAAACTCCCAGCGTTATCAAGAGATCTGGAACGCTCCCCACTTTGAAAGACATTCTCAAAAGCTC CATTAAGCCTAGTAATTATGTTCAGGTTCGGCACCACAAAACGGCTCTGTGGATAAAACACTCCGATGCCGTTTCGTGCCTCTGCTTCAATGAGGACCGA ACTCTTCTCTACTCTGCTTCTTGGGACCGCAGCTTCAAAGTCTGGAGGCTCTCCGATTCCAAATGCCTAGAATCGGTCAACGCACACGACGACGCAGTCA ACTCCGTCATCGCAACGGTGGAAGGATTAGTCTTAACCGGATCTGCAGACGGAACAGTAAAGGTTTGGAAGAGGGAGCAGAGTGGGAAAACGACCAAGCA TTCGCATCAGCAGACGCTTCTGAAGCAGGAATCTGCAGTCACTGCGCTGGCCGTGAATCCGTCAGGTTCACTAATTTACTGCGGATCCAGCGACGGAATC GTTAATTTCTGGGACAGGGAGCGGAATTTGAGCCACGGCGGAGATCTGAAGGGCCACAAATTGGCGGTGCTGTGTTTGGAGTCTGCAGGGAGTTTGGTTT TCAGTGGATCAGCGGACAAGACAATCTGCGTTTGGAGTAGGGATGGTAATATTCACACGTGTCTGTCGGTGCTGACGGGGCATACCGGGCCGGTGAAGTG TTTGGCGGTGGAGGTGGACGGGGAGAATTCTAAGGCAGGAGATCCGAGGTGGATTGTGTACAGTGGGAGCTTGGATAAATCTGTCAAAGTTTGGAGCGTT TCGGAGATGGCGCCAGACGGGAATACAGGCGGAGGCGGGGAATACAAGGGGAAACGGCGGTGGTGGAGGGGTGTTTTCCGATGGGGATTCATGGCCGTCT GA
AA sequence Show only first row Show all	>Lus10032868 pacid=23164790 polypeptide=Lus10032868 locus=Lus10032868.g ID=Lus10032868.BGIv1.0 annot-version=v1.0 MLSNDEDFTAYWNSSASASAASPGMSFDPNRLSCEGSPMTMSPWNQTSPFEKASFMRYDDASITGQQNALIGSLVREEGHIYSLAASKDLLYTGSDSKNI RVWKSLKEFTAFKSSSRLVKAIILSSDKIFTGHQDGKIRVWKASPKTPSVIKRSGTLPTLKDILKSSIKPSNYVQVRHHKTALWIKHSDAVSCLCFNEDR TLLYSASWDRSFKVWRLSDSKCLESVNAHDDAVNSVIATVEGLVLTGSADGTVKVWKREQSGKTTKHSHQQTLLKQESAVTALAVNPSGSLIYCGSSDGI VNFWDRERNLSHGGDLKGHKLAVLCLESAGSLVFSGSADKTICVWSRDGNIHTCLSVLTGHTGPVKCLAVEVDGENSKAGDPRWIVYSGSLDKSVKVWSV SEMAPDGNTGGGGEYKGKRRWWRGVFRWGFMAV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G26490			Transducin/WD40 repeat-like su...		Lus10032868 [exp]	0	1
AT5G02910			F-box/RNI-like superfamily pro...		Lus10000727 [exp]	2.8	1.0000
					Lus10004437 [exp]	4.0	1.0000
AT2G24370			Protein kinase protein with ad...		Lus10027593 [exp]	4.9	1.0000
AT3G18170			Glycosyltransferase family 61 ...		Lus10032454 [exp]	5.7	1.0000
					Lus10021739 [exp]	6.3	1.0000
					Lus10039674 [exp]	6.9	1.0000
AT3G08030			Protein of unknown function, D...		Lus10029502 [exp]	7.5	1.0000
AT1G30700			FAD-binding Berberine family p...		Lus10031080 [exp]	8.0	1.0000
AT3G44220			Late embryogenesis abundant (L...		Lus10034175 [exp]	8.9	0.9771
AT1G30920			F-box family protein (.1)		Lus10006734 [exp]	9.0	0.9819

Compare expression of checked genes

Lus10032868 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.