Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G31940 189 / 3e-56 CYP82C4 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) AT4G31970 184 / 2e-54 CYP82C2, JAH1 "cytochrome P450, family 82, subfamily C, polypeptide 2", cytochrome P450, family 82, subfamily C, polypeptide 2 (.1) AT4G31950 154 / 5e-43 CYP82C3 "cytochrome P450, family 82, subfamily C, polypeptide 3", cytochrome P450, family 82, subfamily C, polypeptide 3 (.1) AT3G48310 121 / 3e-31 CYP71A22 "cytochrome P450, family 71, subfamily A, polypeptide 22", cytochrome P450, family 71, subfamily A, polypeptide 22 (.1) AT3G26160 114 / 2e-28 CYP71B17 "cytochrome P450, family 71, subfamily B, polypeptide 17", cytochrome P450, family 71, subfamily B, polypeptide 17 (.1) AT3G26180 114 / 2e-28 CYP71B20 "cytochrome P450, family 71, subfamily B, polypeptide 20", cytochrome P450, family 71, subfamily B, polypeptide 20 (.1.2) AT4G13290 112 / 5e-28 CYP71A19 "cytochrome P450, family 71, subfamily A, polypeptide 19", cytochrome P450, family 71, subfamily A, polypeptide 19 (.1) AT3G26170 112 / 5e-28 CYP71B19 "cytochrome P450, family 71, subfamily B, polypeptide 19", cytochrome P450, family 71, subfamily B, polypeptide 19 (.1) AT4G37320 112 / 8e-28 CYP81D5 "cytochrome P450, family 81, subfamily D, polypeptide 5", cytochrome P450, family 81, subfamily D, polypeptide 5 (.1) AT3G48320 106 / 1e-25 CYP71A21 "cytochrome P450, family 71, subfamily A, polypeptide 21", cytochrome P450, family 71, subfamily A, polypeptide 21 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011658 [exp] 207 / 4e-63 AT4G31940 510 / 9e-178 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Lus10032743 [exp] 183 / 1e-53 AT4G31940 460 / 1e-157 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Lus10035635 [exp] 182 / 1e-53 AT4G31940 470 / 8e-162 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Lus10007837 [exp] 181 / 4e-53 AT4G31940 575 / 0.0 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Lus10011657 [exp] 184 / 1e-52 AT4G31940 479 / 3e-160 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Lus10010758 [exp] 176 / 7e-52 AT4G31970 346 / 1e-114 "cytochrome P450, family 82, subfamily C, polypeptide 2", cytochrome P450, family 82, subfamily C, polypeptide 2 (.1) Lus10032745 [exp] 178 / 8e-52 AT4G31940 571 / 0.0 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Lus10038203 [exp] 164 / 2e-46 AT3G25180 495 / 9e-172 cytochrome P450, family 82, subfamily G, polypeptide 1 (.1.2) Lus10038200 [exp] 151 / 1e-41 AT4G31940 451 / 2e-154 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G037300 [exp] 225 / 6e-70 AT4G31940 629 / 0.0 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Potri.014G037500 [exp] 218 / 5e-67 AT4G31940 717 / 0.0 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Potri.014G037900 [exp] 209 / 6e-64 AT4G31970 481 / 2e-166 "cytochrome P450, family 82, subfamily C, polypeptide 2", cytochrome P450, family 82, subfamily C, polypeptide 2 (.1) Potri.014G037600 [exp] 196 / 1e-58 AT4G31940 478 / 7e-165 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Potri.014G037400 [exp] 187 / 3e-55 AT4G31940 476 / 4e-164 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Potri.014G037700 [exp] 187 / 3e-55 AT4G31940 508 / 1e-176 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Potri.014G037800 [exp] 183 / 8e-54 AT4G31940 495 / 9e-172 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Potri.014G038200 [exp] 182 / 2e-53 AT4G31940 501 / 7e-174 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Potri.014G038000 [exp] 181 / 5e-53 AT4G31940 514 / 5e-179 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1) Potri.014G038100 [exp] 180 / 1e-52 AT4G31940 520 / 0.0 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [flax] [poplar] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Lus10032869 pacid=23164804 polypeptide=Lus10032869 locus=Lus10032869.g ID=Lus10032869.BGIv1.0 annot-version=v1.0 ATGCGCCGTGTTCTTGTGGTAAGCAGCTCGGAAATGGCAAAAGAACTATTCACAACCAATGACGCGGCTGTTATGTCCCGCCCGACAATTACCGCCGCCA AACTGTTATCTTATAACTTCGCTATCTTCAGCCTGCGTCAATACGACCGTTTTTGGCGAGAAACCAGAAAGGTAGCAGTTATAGAGCTGCTCTCGAACCG CCTGTGTGAACTTCTAGAACCCGTTAGAGAAACCGAGATTCATAAATCAGTAAAGTATCTCCATGACAAGTTAACTAACTTTTGTTGTGTTGATGGGAGA TTAGAAATCGAGATGAAGAAATGGGTAGGGGATTTGAGTCTGAACATCATGATGAAAATGGTCGCTGGGAAGAATATTGATCCGGAAGAAAAAGAAGAAC AAGTTTACAGGCGGTTTCTGCAGGCGCTTGTTGAACATAAGTTGAAAAAGAGTGGTGGTGGTGGTTCGAAATCAGAACAATACGATTTCATCGATGTTCT ACTTTCTGTTCTACATGGAGAATCCCTCTTCGAACATGATCTTGATACAATTATTAAGGCCACCTCGTTGGGAGAGAGCAGTGACAGAGAAGGACGGGGA AAATTGGTTTATCTCCAAGAAATCATCAAAGAAACCATGAGGCTCTATCTGCCGGCGCCACTCTTAGACCCGCGTGAGTTCGTGACTTACTGCGACGTTG GCGGGTATCGAGTCCAGAAAGGGACATGGTTGATTGTGAATTGCTGGAAGATCCAAAGAGACCGCAACGTGTGGGCCGATCACGCAGAATTCAAGCCGGA GAGGCTTCTGACAACTCATATGGATATTGAATTCAAAGGTCACAATTTCCAACTGATTCCGTTTGGCGGCAGAAGAAGAGCTTCCCCGGAGTGA
AA sequence Show only first row Show all	>Lus10032869 pacid=23164804 polypeptide=Lus10032869 locus=Lus10032869.g ID=Lus10032869.BGIv1.0 annot-version=v1.0 MRRVLVVSSSEMAKELFTTNDAAVMSRPTITAAKLLSYNFAIFSLRQYDRFWRETRKVAVIELLSNRLCELLEPVRETEIHKSVKYLHDKLTNFCCVDGR LEIEMKKWVGDLSLNIMMKMVAGKNIDPEEKEEQVYRRFLQALVEHKLKKSGGGGSKSEQYDFIDVLLSVLHGESLFEHDLDTIIKATSLGESSDREGRG KLVYLQEIIKETMRLYLPAPLLDPREFVTYCDVGGYRVQKGTWLIVNCWKIQRDRNVWADHAEFKPERLLTTHMDIEFKGHNFQLIPFGGRRRASPE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G31940		CYP82C4	"cytochrome P450, family 82, s...		Lus10032869 [exp]	0	1

Compare expression of checked genes

Lus10032869 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.