Plant FIBer expression Database

Lus10032870 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G47640 400 / 2e-143 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.002G130100
[exp]
412 / 3e-148 AT1G47640 418 / 1e-150 unknown protein
Potri.014G037100
[exp]
410 / 1e-147 AT1G47640 414 / 4e-149 unknown protein
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF09767 DUF2053 Predicted membrane protein (DUF2053)
Representative CDS sequence
>Lus10032870 pacid=23164773 polypeptide=Lus10032870 locus=Lus10032870.g ID=Lus10032870.BGIv1.0 annot-version=v1.0
ATGACGGCTTTCCACTTCTTCAACTGCGCGATTCTGACCTTCGGTCCTCACGCCGTCTACTACTTCGCCACACCCCTGTCAGAGTATGATACCCTCGGTT
CATCTATTAAAGCTGCGCTAGTTTATCTTGCCACGGCTATAGTTAAGCTTGTTTGTTTGGCAAATTTTCTCAAGGGCTCCGAGAATGACGAGTTTGATCC
TTATCAGGAATCGGTTAAAGCCTTGATTGGTTTGGTAGATGTTGCTGGCATTTATTTTGCCTTGACCCAGTTGACTCACCGGAACATCTCGCAAAAGCAC
AAGTTTCAAGCTGTTGGCCTTGGTTGGGCTTTTGCCGATTCTGTCTTGCACAGACTAGCTCCACTCTGGGTGGGAGCAAGAGGGCTAGAATTCAGTTGGG
ACTACATTCTGCAAGGACTTGAAGCTAATGCAAACTTGGTTTTCAGTATTTCTATGGCTTCATTAGGTTCCTTGATGTGGCTTCGCAGAAATAAACCAAA
GACCTTGATACCGTTAATATACACATGTGCCTTGATAGTGGCAACCATGCCTTCTATCACAAGCTATTTGAGAAGAAGGTTGGACTGGCATTTCCCGGAA
GTCGTGGGGTTCGAGCTTGCATCGTCTCTAGTAATGGCATTTATCAGTTGGCAACTCTTGTACGCATGTCAGAGACCTTCATCCTAG
AA sequence
>Lus10032870 pacid=23164773 polypeptide=Lus10032870 locus=Lus10032870.g ID=Lus10032870.BGIv1.0 annot-version=v1.0
MTAFHFFNCAILTFGPHAVYYFATPLSEYDTLGSSIKAALVYLATAIVKLVCLANFLKGSENDEFDPYQESVKALIGLVDVAGIYFALTQLTHRNISQKH
KFQAVGLGWAFADSVLHRLAPLWVGARGLEFSWDYILQGLEANANLVFSISMASLGSLMWLRRNKPKTLIPLIYTCALIVATMPSITSYLRRRLDWHFPE
VVGFELASSLVMAFISWQLLYACQRPSS

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G47640 unknown protein Lus10032870
[exp]
0 1
AT5G08300 Succinyl-CoA ligase, alpha sub... Lus10040992
[exp]
5.8 0.9355
AT1G79390 unknown protein Lus10001759
[exp]
7.1 0.9023
AT5G67500 VDAC2, ATVDAC2 ARABIDOPSIS THALIANA VOLTAGE D... Lus10011539
[exp]
9.2 0.9255
AT2G43970 RNA-binding protein (.1.2) Lus10025608
[exp]
10.1 0.9116
AT2G36460 Aldolase superfamily protein (... Lus10023870
[exp]
10.2 0.9276
AT3G01280 VDAC1, ATVDAC1 ARABIDOPSIS THALIANA VOLTAGE D... Lus10013271
[exp]
17.4 0.9168
AT5G06660 Protein of unknown function DU... Lus10029308
[exp]
21.7 0.9146
AT2G44065 Ribosomal protein L2 family (.... Lus10001572
[exp]
21.8 0.9105
AT3G12120 FAD2 fatty acid desaturase 2 (.1.2) Lus10021051
[exp]
22.6 0.9181
AT1G11680 EMB1738, CYP51A... embryo defective 1738, CYTOCHR... Lus10004146
[exp]
23.3 0.9189

Lus10032870 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.