Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G33280 206 / 3e-63 B3 REM16 AP2/B3-like transcriptional factor family protein (.1) AT3G18990 94 / 3e-21 B3 REM39, VRN1 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) AT4G34400 78 / 1e-15 B3 AP2/B3-like transcriptional factor family protein (.1) AT3G53310 66 / 8e-12 B3 REM20 AP2/B3-like transcriptional factor family protein (.1) AT3G06220 64 / 8e-12 B3 REM21 AP2/B3-like transcriptional factor family protein (.1) AT3G06160 63 / 8e-11 B3 AP2/B3-like transcriptional factor family protein (.1.2) AT1G49480 56 / 5e-09 B3 REM19, RTV1 related to vernalization1 1 (.1) AT3G18960 56 / 8e-09 B3 AP2/B3-like transcriptional factor family protein (.1) AT4G01580 54 / 3e-08 B3 AP2/B3-like transcriptional factor family protein (.1) AT5G32460 56 / 4e-08 Transcriptional factor B3 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023691 [exp] 219 / 8e-67 AT4G33280 192 / 4e-57 AP2/B3-like transcriptional factor family protein (.1) Lus10016286 [exp] 169 / 1e-49 AT4G33280 166 / 7e-49 AP2/B3-like transcriptional factor family protein (.1) Lus10016285 [exp] 137 / 3e-36 AT4G33280 139 / 3e-37 AP2/B3-like transcriptional factor family protein (.1) Lus10032873 [exp] 135 / 2e-35 AT4G33280 129 / 1e-33 AP2/B3-like transcriptional factor family protein (.1) Lus10012041 [exp] 86 / 4e-18 AT3G18990 388 / 8e-135 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Lus10027940 [exp] 84 / 1e-17 AT3G18990 371 / 4e-128 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Lus10009688 [exp] 66 / 8e-12 AT3G18990 113 / 2e-28 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Lus10032749 [exp] 62 / 8e-12 AT4G33280 59 / 1e-11 AP2/B3-like transcriptional factor family protein (.1) Lus10036045 [exp] 64 / 6e-11 AT3G18990 110 / 2e-27 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G129900 [exp] 335 / 3e-113 AT4G33280 237 / 9e-76 AP2/B3-like transcriptional factor family protein (.1) Potri.014G036900 [exp] 327 / 4e-110 AT4G33280 256 / 5e-83 AP2/B3-like transcriptional factor family protein (.1) Potri.002G129800 [exp] 312 / 2e-103 AT4G33280 159 / 9e-45 AP2/B3-like transcriptional factor family protein (.1) Potri.010G191500 [exp] 87 / 1e-18 AT3G18990 189 / 5e-57 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Potri.014G036800 [exp] 87 / 2e-18 AT3G18990 92 / 3e-20 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Potri.004G147200 [exp] 86 / 3e-18 AT1G49480 110 / 5e-28 related to vernalization1 1 (.1) Potri.009G108500 [exp] 77 / 3e-15 AT3G18990 395 / 2e-137 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Potri.004G230100 [exp] 69 / 2e-12 AT3G18990 161 / 1e-44 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Potri.004G146900 [exp] 67 / 7e-12 AT3G18990 353 / 6e-121 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Potri.007G035500 [exp] 66 / 8e-12 AT5G66980 102 / 4e-25 AP2/B3-like transcriptional factor family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0405 [flax] [poplar] DNA_b-psBarrel PF02362 [flax] [poplar] B3 B3 DNA binding domain
Representative CDS sequence Show only first row Show all	>Lus10032871 pacid=23164794 polypeptide=Lus10032871 locus=Lus10032871.g ID=Lus10032871.BGIv1.0 annot-version=v1.0 ATGGAAGAAGAATTGAGCGGCGGCTGCAGAAGCTGGGAAGAGGATATGTATTGGAAACATTTCCAGTTCACCCATTTCTCTCAGTTTCTCCTTCCTGGCT ACCATCACCAGCTTGCCATGCCTGAAACCTTCTTCGCCAATCAGAGAAAGAAATTGCCTGAATGTGTGACTCTCAAAGGCCCTGGTGGAGATACATGGGA AGTTGGACTTGCTGTGAGATCAGGAACGTTGTTCTTTGACCAAGGTTGGGAAGAATTTGTGAAAGATCATTTATTGAAGGAGCATGATCTTTTGGTCTTC AAGTACAATGGGGTTTCACACTTTGAGGTTATGATTTTTGACGGGGTCACCTTCTGCGAGAAGGCAACTTCTTATTTTGTTAAGAAGAGTAGTGGAGGCA AAGATGTTGACAATGGGATCCATTCAAAAAGGAGGCTTGCAGGAAACTCTTCTGGTGTCATTATGGCTACTCCCATCGGTCAGGTTAGAGGCAGTTCGCT TGAGAAAACTGCAGAGAATGACATTGGCAAGGTACAACCATCGTCACAGCCTGCTGCTAGACCGATGATGGATGATGAGTTTGGAACAACACCAATCTTA AGACCGGTCCAGCATCCCATCATCTGGGAAGCTACCAACTTTAAGAAGCAAAAGATGTCGAGCGGCCACATTCCTGATAACGAGACTGTAAAAAGTGAAG AACTCTCTTGTTCTGGGGAAAGAGAGAAAGAACAAGATGTTAGAAGCACACCTCTCAGCTATGGCATGGTACATGATGCGCCATATATATCATTTAGAAA GGTGGCGACAGAAGTGGACAAAAAGAAGGCACTTCTTTTGGCACAAGAGGCAGTAACATTAGAAGGCTTCTATGTGATTATGAAACCGACGCATGTATAT AGGAAATTCTTCATGTCTATCCCCTGTGGATGGATGAATAAACATCTGAACATGTTGCTTAAGCACCCAGTGACTCTAAAGATGAAAGGGAAGACATGGA ATACTAAATTCGTGTACCAGGAGACTCGTAAAAGCGGTGGCCTTTCAGCTGGATGGAGGTCTTTTGCAGGGGATAACAACTTGCAGGAATTCGATATTTG TGTATTCAATCCGGATGGTCCATTCCAGACATCAATGAGCCTGAACGTTGACATAGTCCGCGCTGTCGAAGAAGAATAA
AA sequence Show only first row Show all	>Lus10032871 pacid=23164794 polypeptide=Lus10032871 locus=Lus10032871.g ID=Lus10032871.BGIv1.0 annot-version=v1.0 MEEELSGGCRSWEEDMYWKHFQFTHFSQFLLPGYHHQLAMPETFFANQRKKLPECVTLKGPGGDTWEVGLAVRSGTLFFDQGWEEFVKDHLLKEHDLLVF KYNGVSHFEVMIFDGVTFCEKATSYFVKKSSGGKDVDNGIHSKRRLAGNSSGVIMATPIGQVRGSSLEKTAENDIGKVQPSSQPAARPMMDDEFGTTPIL RPVQHPIIWEATNFKKQKMSSGHIPDNETVKSEELSCSGEREKEQDVRSTPLSYGMVHDAPYISFRKVATEVDKKKALLLAQEAVTLEGFYVIMKPTHVY RKFFMSIPCGWMNKHLNMLLKHPVTLKMKGKTWNTKFVYQETRKSGGLSAGWRSFAGDNNLQEFDICVFNPDGPFQTSMSLNVDIVRAVEEE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G33280	B3	REM16	AP2/B3-like transcriptional fa...		Lus10032871 [exp]	0	1
AT3G18640	C3HZnF		Zinc finger C-x8-C-x5-C-x3-H t...		Lus10020889 [exp]	2.2	0.8513
AT5G42700	B3		AP2/B3-like transcriptional fa...		Lus10019873 [exp]	6.0	0.8209
AT5G13020		AtEML3, ACK1	EMSY-like 3, Emsy N Terminus (...		Lus10031223 [exp]	6.3	0.8147
AT5G08120		MPB2C, ATMBP2C,...	movement protein binding prote...		Lus10017881 [exp]	7.9	0.8200
AT4G21100		DDB1B	damaged DNA binding protein 1B...		Lus10020922 [exp]	8.3	0.8335
AT3G09100			mRNA capping enzyme family pro...		Lus10035534 [exp]	9.4	0.8475
AT2G04740			ankyrin repeat family protein ...		Lus10012362 [exp]	9.5	0.7215
AT4G38980			unknown protein		Lus10031089 [exp]	9.8	0.7918
AT2G24530			unknown protein		Lus10042444 [exp]	10.0	0.8024
AT5G61060		HDA5, HDA05, AT...	histone deacetylase 5 (.1.2)		Lus10034689 [exp]	13.1	0.8310

Compare expression of checked genes

Lus10032871 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.