Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G33280 88 / 1e-19 B3 REM16 AP2/B3-like transcriptional factor family protein (.1) AT5G66980 43 / 0.0001 B3 AP2/B3-like transcriptional factor family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016286 [exp] 371 / 7e-130 AT4G33280 166 / 7e-49 AP2/B3-like transcriptional factor family protein (.1) Lus10023691 [exp] 336 / 1e-113 AT4G33280 192 / 4e-57 AP2/B3-like transcriptional factor family protein (.1) Lus10032871 [exp] 96 / 2e-22 AT4G33280 152 / 1e-42 AP2/B3-like transcriptional factor family protein (.1) Lus10016285 [exp] 84 / 4e-15 AT4G33280 139 / 3e-37 AP2/B3-like transcriptional factor family protein (.1) Lus10032873 [exp] 81 / 7e-15 AT4G33280 129 / 1e-33 AP2/B3-like transcriptional factor family protein (.1) Lus10032749 [exp] 55 / 1e-09 AT4G33280 59 / 1e-11 AP2/B3-like transcriptional factor family protein (.1) Lus10041961 [exp] 45 / 4e-05 AT3G18990 94 / 3e-22 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Lus10017970 [exp] 43 / 0.0002 AT3G18990 90 / 1e-20 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Lus10027943 [exp] 43 / 0.0002 AT3G18960 76 / 9e-16 AP2/B3-like transcriptional factor family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G129800 [exp] 67 / 2e-12 AT4G33280 159 / 9e-45 AP2/B3-like transcriptional factor family protein (.1) Potri.014G036800 [exp] 46 / 2e-05 AT3G18990 92 / 3e-20 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Potri.014G057101 [exp] 41 / 0.0006 AT3G18990 76 / 5e-16 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Potri.010G191500 [exp] 41 / 0.0006 AT3G18990 189 / 5e-57 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Potri.014G036900 [exp] 0 / 1 AT4G33280 256 / 5e-83 AP2/B3-like transcriptional factor family protein (.1) Potri.002G129900 [exp] 0 / 1 AT4G33280 237 / 9e-76 AP2/B3-like transcriptional factor family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10032872 pacid=23164799 polypeptide=Lus10032872 locus=Lus10032872.g ID=Lus10032872.BGIv1.0 annot-version=v1.0 ATGCAGCAGCTGGGAAGAAGAGATATATTGGACACATTTCCAATTCACCCATTTCTTCCGCTTACTGCATGCGGGCTTTCACCTTACCCTTCAAATTACC AAAGCTGTGACTCTGACAGGTGCAAGCGGAGCGAATTGGAGCGTGGGACAAACGCCGATGAAACCACCTTCTTCAGCCGCGGATGGAAAGAATTTGCCAC CGACAATTGTCTACAGGTGGACGAGCTTCTGGTGTTCAAGTACAACGGCGATTCCCACTTCGACGCCCTCATCCTCGAGTCACCAACCTCCTGCGAGAAA GCCACTGCTTATTTCGTCAAGAAGAAGAAGAAAAACGGAAGAGAAGGAGGCAAACAACCCTCCGTAATTAGCCGGGAGAGGGAAACAATCAACGAAAATT CGGGCGGAGGGGTGTTCCCTGCTTCGCCAGGAATTCCGAACGATGTCGATTCGCCAGGGTCGTCGTCGACTGATTGGCAGCCTGTATCTTCCGGCGAGTG CAACAAAAGGCCGGCGGAGGTTAAATTAGACAAGGTGGGGAAATCGAGGAGGAGGAGGAGGGTGGGTCAAGTGAATAGGACGCTGGTAACAGAGGAATCG AAAAGGAAGACTTTGAGATTGGCCTGCGATGCAGGAAATCAAGACAGCTTCATCTCCGTTATGAAAACTAGCAGCGTTTATACTGCTTATTATCTGACAG TACCGAGCTGGTGGATGAAGAAACATGTGAAGAAGTACTGGGGGACGCAAGAGGTAATACTGAAGGTGGAAGAAAACGAATGGCCGGTGAAGTTCAGACT TAAGAAAGATTCGGGCGGGAGGGTTTGGTGGTGGATGGAGGACGTTCGTACAGGACAACCATTTGCAGATGTTTGA
AA sequence Show only first row Show all	>Lus10032872 pacid=23164799 polypeptide=Lus10032872 locus=Lus10032872.g ID=Lus10032872.BGIv1.0 annot-version=v1.0 MQQLGRRDILDTFPIHPFLPLTACGLSPYPSNYQSCDSDRCKRSELERGTNADETTFFSRGWKEFATDNCLQVDELLVFKYNGDSHFDALILESPTSCEK ATAYFVKKKKKNGREGGKQPSVISRERETINENSGGGVFPASPGIPNDVDSPGSSSTDWQPVSSGECNKRPAEVKLDKVGKSRRRRRVGQVNRTLVTEES KRKTLRLACDAGNQDSFISVMKTSSVYTAYYLTVPSWWMKKHVKKYWGTQEVILKVEENEWPVKFRLKKDSGGRVWWWMEDVRTGQPFADV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G33280	B3	REM16	AP2/B3-like transcriptional fa...		Lus10032872 [exp]	0	1
					Lus10034328 [exp]	10.9	0.8518
AT1G06620			2-oxoglutarate (2OG) and Fe(II...		Lus10017080 [exp]	15.6	0.8433
AT1G08510		FATB	fatty acyl-ACP thioesterases B...		Lus10025763 [exp]	19.1	0.8433
					Lus10022518 [exp]	22.1	0.8433
AT2G20420			ATP citrate lyase (ACL) family...		Lus10022902 [exp]	24.7	0.8433
AT4G35260		IDH-I, IDH1	isocitrate dehydrogenase I, is...		Lus10023937 [exp]	27.1	0.8433
					Lus10024379 [exp]	29.2	0.8433
					Lus10009727 [exp]	31.2	0.8433
AT1G10520		AtPol{lambda}	DNA polymerase {lambda}, DNA p...		Lus10007325 [exp]	31.3	0.7479
					Lus10011078 [exp]	33.1	0.8433

Compare expression of checked genes

Lus10032872 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.