Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G33280 129 / 2e-33 B3 REM16 AP2/B3-like transcriptional factor family protein (.1) AT4G34400 74 / 7e-14 B3 AP2/B3-like transcriptional factor family protein (.1) AT5G60140 65 / 2e-11 B3 AP2/B3-like transcriptional factor family protein (.1) AT3G18990 65 / 2e-11 B3 REM39, VRN1 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) AT1G49475 57 / 2e-09 B3 AP2/B3-like transcriptional factor family protein (.1) AT3G18960 56 / 6e-09 B3 AP2/B3-like transcriptional factor family protein (.1) AT5G66980 57 / 1e-08 B3 AP2/B3-like transcriptional factor family protein (.1) AT4G01580 54 / 3e-08 B3 AP2/B3-like transcriptional factor family protein (.1) AT3G53310 55 / 4e-08 B3 REM20 AP2/B3-like transcriptional factor family protein (.1) AT4G31650 55 / 6e-08 B3 REM6 Transcriptional factor B3 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016285 [exp] 828 / 0 AT4G33280 139 / 3e-37 AP2/B3-like transcriptional factor family protein (.1) Lus10023691 [exp] 159 / 2e-43 AT4G33280 192 / 4e-57 AP2/B3-like transcriptional factor family protein (.1) Lus10032871 [exp] 135 / 2e-35 AT4G33280 152 / 1e-42 AP2/B3-like transcriptional factor family protein (.1) Lus10016286 [exp] 129 / 8e-34 AT4G33280 166 / 7e-49 AP2/B3-like transcriptional factor family protein (.1) Lus10032749 [exp] 76 / 1e-16 AT4G33280 59 / 1e-11 AP2/B3-like transcriptional factor family protein (.1) Lus10032872 [exp] 87 / 1e-14 AT4G33280 93 / 2e-28 AP2/B3-like transcriptional factor family protein (.1) Lus10023844 [exp] 63 / 3e-11 AT3G18990 179 / 1e-55 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Lus10012041 [exp] 63 / 2e-10 AT3G18990 388 / 8e-135 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Lus10035637 [exp] 63 / 3e-10 AT3G18990 91 / 9e-20 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G129800 [exp] 160 / 6e-44 AT4G33280 159 / 9e-45 AP2/B3-like transcriptional factor family protein (.1) Potri.002G129900 [exp] 140 / 2e-37 AT4G33280 237 / 9e-76 AP2/B3-like transcriptional factor family protein (.1) Potri.014G036900 [exp] 140 / 2e-37 AT4G33280 256 / 5e-83 AP2/B3-like transcriptional factor family protein (.1) Potri.014G036800 [exp] 88 / 3e-18 AT3G18990 92 / 3e-20 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Potri.010G191500 [exp] 68 / 3e-12 AT3G18990 189 / 5e-57 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Potri.004G147200 [exp] 62 / 5e-10 AT1G49480 110 / 5e-28 related to vernalization1 1 (.1) Potri.009G108500 [exp] 60 / 2e-09 AT3G18990 395 / 2e-137 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Potri.004G146900 [exp] 57 / 2e-08 AT3G18990 353 / 6e-121 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Potri.007G035700 [exp] 52 / 2e-07 AT4G01580 71 / 4e-15 AP2/B3-like transcriptional factor family protein (.1) Potri.004G147000 [exp] 52 / 4e-07 AT3G18990 258 / 3e-83 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0405 [flax] [poplar] DNA_b-psBarrel PF02362 [flax] [poplar] B3 B3 DNA binding domain
Representative CDS sequence Show only first row Show all	>Lus10032873 pacid=23164775 polypeptide=Lus10032873 locus=Lus10032873.g ID=Lus10032873.BGIv1.0 annot-version=v1.0 ATGGAATCCGGAAGTCGAACATCCAGCTGGGAAGAAGAAATCTACTGGAACAATTTCCAGTACACGCATTTCTCTACCTTCCTCCATTCTGATTTCAACA CCCACCTTGTGATTCCGGCGAGGTTTGCAAAGAAGATGAGGACCAAGTTACCAGCAACAGTCAATCTGAAGGGACCCAGTCGAAATAGCTGGAGTGTCGG TGTAGAGTCATCAAATGACGAAACTCTGTTCTTCAGCAGCGGTTGGAAGGAATTCGCCCAAGACCACTGTCTACACTCCACTAACCTTCTCATCTTCCGG TACAATGGAGACGCTCTGTTTGATGTATTGGTTTTCGATTTGGAGAGCTCCTGCGAGAAGGCGAGTTCTTATTTTGCGCGGAAAAAGGAGACAAGGAAGA AAATGAGGGGAGATACTCCTGCAACTACTTCTTCTACTGGATTTATCGCTCCCTCGCCGGAACAACAAAATCAGACTGGTGATACAAAACCGTCGACGTG CCAGCCGGTGATCTCTGAATCACCGAAAAAACGTGCCAGGACTGGATGGACAAAGCCCACTGCAAGTCGTGATTGGAAGTCGGCACCTGAGAAATCGAGA CGGCGGGCTCTGAAATTGGCGAGTTATTTTACTGCTCGGAAACAGGGCACGGGGAACAAAATCAAACGGGCTAGAGCTGAAATGGAAAACCCGGTTAATC ACAGCGGTTGGAAGCCGGCGGCAGAAGAATCGAATCAGAAAGTCTTAAAATCGGCAAGTTATTTTTGTGTGCAAAATCAGGAGATGGGGGGAAGTACTAC TGCTACCAAATCCGTCAGTTCCGAAGGCTTTGTTTGTAATGACAGCGATATTAACAAGGGCACTCCTCCGGCGGCGGAGAAATCTGGAGAGGATGGCAAT GGCATACATACGAAAACCCCAGCGTTGCCGACGTGCCCGCCGATAATCTGCGAGCTGTCGAACAAAAGGGCTAGAGAAGAATTGACAAAGCCGGTGGTTA TGAATAATGATTCATGGAAGACGGTGTCGGAGGAATCGAAACTAAAAGCTATAAGAGCAGCGAGATATGCATTGAAGGAAGACGGGTTCATCACGGTGAT GAAAACCACTCATGTTAAAACGTGTTTCTATATGACAATACCTATGGCGTGGATGAAGACGCACATGGATGGGCGGGAGAAGCAGGAAGTTATTCTAAGG GTAGGAGGGGGGGAATGGAGAGTGAGGTATAAGCTTCGTGAGAAAAGGGATTCAGGTGGGCTCACCCATGGATGGAGGACCTTCGCAGAGGATAACAGTT TGAAACAGTTTGACGTTTGTTTGTTCCAACCAAGCAAGAGCAGCTACAATGTTCCTGGTGCTGATGCAGCTGCTGACATCGTTCTGGACGTCGAGATCTT TCGCTGTTGA
AA sequence Show only first row Show all	>Lus10032873 pacid=23164775 polypeptide=Lus10032873 locus=Lus10032873.g ID=Lus10032873.BGIv1.0 annot-version=v1.0 MESGSRTSSWEEEIYWNNFQYTHFSTFLHSDFNTHLVIPARFAKKMRTKLPATVNLKGPSRNSWSVGVESSNDETLFFSSGWKEFAQDHCLHSTNLLIFR YNGDALFDVLVFDLESSCEKASSYFARKKETRKKMRGDTPATTSSTGFIAPSPEQQNQTGDTKPSTCQPVISESPKKRARTGWTKPTASRDWKSAPEKSR RRALKLASYFTARKQGTGNKIKRARAEMENPVNHSGWKPAAEESNQKVLKSASYFCVQNQEMGGSTTATKSVSSEGFVCNDSDINKGTPPAAEKSGEDGN GIHTKTPALPTCPPIICELSNKRAREELTKPVVMNNDSWKTVSEESKLKAIRAARYALKEDGFITVMKTTHVKTCFYMTIPMAWMKTHMDGREKQEVILR VGGGEWRVRYKLREKRDSGGLTHGWRTFAEDNSLKQFDVCLFQPSKSSYNVPGADAAADIVLDVEIFRC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G33280	B3	REM16	AP2/B3-like transcriptional fa...		Lus10032873 [exp]	0	1
AT1G36390			Co-chaperone GrpE family prote...		Lus10042696 [exp]	1.7	0.8397
AT3G03320			RNA-binding ASCH domain protei...		Lus10012450 [exp]	4.0	0.7921
AT3G10080			RmlC-like cupins superfamily p...		Lus10020631 [exp]	4.7	0.8304
AT5G60370			unknown protein		Lus10023343 [exp]	10.2	0.8186
AT1G01420		UGT72B3	UDP-glucosyl transferase 72B3 ...		Lus10001905 [exp]	10.6	0.8142
AT3G09950			unknown protein		Lus10038794 [exp]	10.9	0.7935
AT4G17140			pleckstrin homology (PH) domai...		Lus10006816 [exp]	11.4	0.7907
					Lus10010603 [exp]	15.9	0.7846
AT5G45650			subtilase family protein (.1)		Lus10020458 [exp]	16.7	0.8074
AT5G07030			Eukaryotic aspartyl protease f...		Lus10026171 [exp]	16.9	0.7731

Compare expression of checked genes

Lus10032873 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.