Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G27260 53 / 7e-08 unknown protein AT1G30140 48 / 2e-06 unknown protein AT4G02210 42 / 0.0005 unknown protein AT2G29880 40 / 0.001 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033100 [exp] 316 / 5e-109 ND / Lus10010798 [exp] 191 / 4e-57 AT5G27260 61 / 5e-10 unknown protein Lus10004397 [exp] 187 / 4e-57 AT5G27260 77 / 6e-16 unknown protein Lus10022379 [exp] 178 / 7e-54 AT5G27260 74 / 1e-14 unknown protein Lus10005725 [exp] 160 / 4e-49 ND / Lus10018174 [exp] 154 / 2e-44 AT5G41980 68 / 1e-12 unknown protein Lus10023062 [exp] 145 / 2e-41 AT4G02210 67 / 4e-12 unknown protein Lus10032816 [exp] 133 / 7e-38 AT2G24960 57 / 1e-09 unknown protein Lus10032996 [exp] 119 / 3e-31 AT4G02210 49 / 2e-06 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G200600 [exp] 53 / 1e-07 AT4G02210 471 / 1e-163 unknown protein Potri.006G196716 [exp] 49 / 2e-06 AT4G02550 69 / 2e-13 unknown protein Potri.011G163248 [exp] 49 / 2e-06 AT4G02550 93 / 4e-22 unknown protein Potri.010G215600 [exp] 48 / 4e-06 AT4G02550 77 / 7e-16 unknown protein Potri.003G047151 [exp] 47 / 6e-06 AT4G02550 69 / 3e-13 unknown protein Potri.001G157750 [exp] 47 / 9e-06 AT4G02550 73 / 6e-15 unknown protein Potri.012G061366 [exp] 46 / 1e-05 AT4G02550 71 / 2e-14 unknown protein Potri.011G088750 [exp] 46 / 1e-05 AT4G02550 79 / 3e-17 unknown protein Potri.001G014200 [exp] 45 / 2e-05 AT4G02550 81 / 6e-18 unknown protein Potri.009G022650 [exp] 45 / 2e-05 AT4G02550 79 / 7e-17 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10032874 pacid=23164820 polypeptide=Lus10032874 locus=Lus10032874.g ID=Lus10032874.BGIv1.0 annot-version=v1.0 ATGGATAAGGCAAACAAATCTGCTGGTAGATCTGGTGCAAAGCTTGTTTCGAGAAGAAAAGTGAGAGAGTACAAAAATTGGACCAAAGAGGAGGATAAGG CATTCATACAATGCATGCTGAAATTGGTGCGTGAAAAGTATATCGTAGATGGGAGCTTTCAAGCTGGAGGGTATAAAGAGCTTCAACGACTACTGAATAT TGAAATTCCTTGTAGCGATATTAAAATTGATCCTCACATCAAGTCTCGTCATCGGTGGTGGAAAGACAAGTTTTGTGCCCAAAATGATTTGAAGAATGCA AGCGGGATGGGATGGGATGATGCACGTGGATGTGTCACAATGGAGAAAGGAAAATTTAGTCAATGGATACTGCATCATCCTAAGGCTCATGGGTTGAACA ACACACTTTTAGAGTATTGGGAAGAGCTTTCTGAAATTTATGGAGAGTCCAGAGCTAATGGTTCAGATGCTGTCCAAATGGGTGATGCTGCGAATATAGC TGCAAATGTTATGAAAAATAACACCACAGTTGGTGATCTTATGGAAGAAGACAATACATGTTTTGAGGTTATTGAGTTTTGTGGTGGTGAAACTAATCAG ACACAAGAAGACCTACTAAATGCTGGCTATGACATCCATGCTACAAGCTTGAAGGAAACTGGAGCTCAATCAAGTTGTAAAGAAAAGGGAAAGCAATCAT TTGCATCGTCTAGTCAGAAACGAACTAGGCAGCAAGCAAATGATTCTGTTCTTGTTTCTATTGATGGAAAGATTGACAAGATGACCAAAACCGTTGTTGA CACTGTGCATAACCTTGTGAGGATGGCAAATACTTTCTGCATACATGATGATACGACAATGAAGCAAAAACACTGTACAACGAGATGGAGAAGTTCTCAG ACCTAA
AA sequence Show only first row Show all	>Lus10032874 pacid=23164820 polypeptide=Lus10032874 locus=Lus10032874.g ID=Lus10032874.BGIv1.0 annot-version=v1.0 MDKANKSAGRSGAKLVSRRKVREYKNWTKEEDKAFIQCMLKLVREKYIVDGSFQAGGYKELQRLLNIEIPCSDIKIDPHIKSRHRWWKDKFCAQNDLKNA SGMGWDDARGCVTMEKGKFSQWILHHPKAHGLNNTLLEYWEELSEIYGESRANGSDAVQMGDAANIAANVMKNNTTVGDLMEEDNTCFEVIEFCGGETNQ TQEDLLNAGYDIHATSLKETGAQSSCKEKGKQSFASSSQKRTRQQANDSVLVSIDGKIDKMTKTVVDTVHNLVRMANTFCIHDDTTMKQKHCTTRWRSSQ T

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G27260			unknown protein		Lus10032874 [exp]	0	1
					Lus10005514 [exp]	3.9	1.0000
AT1G28300	B3	LEC2	LEAFY COTYLEDON 2, AP2/B3-like...		Lus10014005 [exp]	4.9	1.0000
AT3G02960			Heavy metal transport/detoxifi...		Lus10015762 [exp]	6.0	1.0000
AT5G05070			DHHC-type zinc finger family p...		Lus10027274 [exp]	6.9	1.0000
AT2G46150			Late embryogenesis abundant (L...		Lus10039664 [exp]	7.7	0.8421
AT3G60730			Plant invertase/pectin methyle...		Lus10015877 [exp]	8.5	1.0000
AT5G27260			unknown protein		Lus10007175 [exp]	8.7	1.0000
AT1G66350	GRAS	RGL1	RGA-like 1 (.1)		Lus10016888 [exp]	9.2	1.0000
AT1G61320			FBD / Leucine Rich Repeat doma...		Lus10010664 [exp]	10.4	1.0000
AT2G36190		ATCWINV4	cell wall invertase 4 (.1)		Lus10017015 [exp]	11.0	1.0000

Compare expression of checked genes

Lus10032874 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.