Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G27040 391 / 1e-129 Major facilitator superfamily protein (.1.2) AT1G69850 384 / 2e-126 NTL1, ATNRT1:2 nitrate transporter 1:2 (.1) AT1G33440 360 / 3e-117 Major facilitator superfamily protein (.1) AT1G59740 358 / 2e-116 Major facilitator superfamily protein (.1) AT2G26690 346 / 7e-112 Major facilitator superfamily protein (.1) AT5G01180 338 / 4e-109 ATPTR5 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 5, peptide transporter 5 (.1) AT2G02040 334 / 2e-107 NTR1, ATPTR2-B NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1) AT1G68570 331 / 5e-106 Major facilitator superfamily protein (.1) AT5G62730 327 / 2e-104 Major facilitator superfamily protein (.1) AT3G54140 317 / 5e-101 ATPTR1 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006477 [exp] 999 / 0 AT1G27040 439 / 2e-148 Major facilitator superfamily protein (.1.2) Lus10002793 [exp] 672 / 0 AT1G27040 418 / 7e-141 Major facilitator superfamily protein (.1.2) Lus10015240 [exp] 448 / 2e-151 AT1G69850 469 / 1e-159 nitrate transporter 1:2 (.1) Lus10005417 [exp] 444 / 4e-150 AT1G69850 446 / 1e-150 nitrate transporter 1:2 (.1) Lus10037217 [exp] 399 / 1e-132 AT1G69850 813 / 0.0 nitrate transporter 1:2 (.1) Lus10013276 [exp] 395 / 5e-131 AT1G69850 780 / 0.0 nitrate transporter 1:2 (.1) Lus10036710 [exp] 390 / 6e-129 AT1G69850 822 / 0.0 nitrate transporter 1:2 (.1) Lus10030799 [exp] 388 / 5e-128 AT1G69850 771 / 0.0 nitrate transporter 1:2 (.1) Lus10033101 [exp] 372 / 8e-122 AT5G62730 748 / 0.0 Major facilitator superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G129500 [exp] 732 / 0 AT1G27040 456 / 5e-155 Major facilitator superfamily protein (.1.2) Potri.014G036200 [exp] 726 / 0 AT1G27040 428 / 6e-144 Major facilitator superfamily protein (.1.2) Potri.004G064100 [exp] 451 / 9e-153 AT1G59740 417 / 2e-139 Major facilitator superfamily protein (.1) Potri.005G001400 [exp] 442 / 6e-149 AT1G59740 372 / 2e-121 Major facilitator superfamily protein (.1) Potri.001G272900 [exp] 439 / 3e-148 AT1G59740 407 / 1e-135 Major facilitator superfamily protein (.1) Potri.010G034300 [exp] 393 / 2e-130 AT1G69850 781 / 0.0 nitrate transporter 1:2 (.1) Potri.003G000800 [exp] 373 / 7e-122 AT1G59740 821 / 0.0 Major facilitator superfamily protein (.1) Potri.012G070700 [exp] 366 / 1e-119 AT1G69850 686 / 0.0 nitrate transporter 1:2 (.1) Potri.004G229000 [exp] 365 / 5e-119 AT1G59740 808 / 0.0 Major facilitator superfamily protein (.1) Potri.019G067500 [exp] 365 / 7e-119 AT1G33440 734 / 0.0 Major facilitator superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [flax] [poplar] MFS PF00854 [flax] [poplar] PTR2 POT family
Representative CDS sequence Show only first row Show all	>Lus10032876 pacid=23164815 polypeptide=Lus10032876 locus=Lus10032876.g ID=Lus10032876.BGIv1.0 annot-version=v1.0 ATGGGAGCAGCGAAGAAACCACGAGGCAGGCTCGGGGGAAACAGAGCCACCCTTTTTGTTTTCGCAATGGAAGGGCTGGAGAACATGGCGTTCGTGGCAA ACGCAGTAAGCCTGTTCACATACTTCTACGGATATATGAACTTCAGCATCACGAAATCAGCCACCACTCTGACAAACTTGATGGGAACTGCTTTCTTGCT CTCCCTCTTCGGTGGTTTCCTCTCAGACACCTACCTCTCCAGATTCACCACTTGTGTCCTCTTCGGTACCTTCGAGTTGTTGGGATACGGTCTTCTAGCG GTGCAAGCACACTTCAACCAACTGAGACCCACGCCGTGCAACGGAGCCGCTGCGTTGAACAACGCAAACCAATGCGAGGGCGCGAACAGCGGTCAGTCGG CCATGCTCTACATCGGACTCTACCTAATAGCATTGGGAACCGGCGGTGTAAAGGCCGCTCTTCCTGCATTAGGGGCCGACCAATTCGACACGAGGAACCC AAAGGAAGCCCCTAAGCTGTCCAGCTTCTTCAATTGGTTCCTTTTCAGCCTGACTGCTGGAGCCATAATTGGGGTCACGTTTGTGGTGTGGATAAGCGCT AACCAAGGTTGGGACTGGGGGTTTGGACTCAGTGGCCTTGCTGTTTTGTTCGCCGTTGTCTTTGTTTCCATGGGGAAGTCTCTTTATCGCATGAATTCTC CTTCTGGGAGTCCCTTTGTTCGCTTCGCTCAGGTATTTGTGGCTGCAATTAGAAACAGGAATCTTCCAACGCCAAAGGCTGAGGATGAGCTCTACGAGAT TCGAGAGAAAGGCAAAGGCGGGATTAATCACGTCGAAATTCTTCAAAGAACTAACCAATTCAGGTTTTTGGACAAGGCAGCAATAGTCATGAACCCTACG AATGACCTCCAGAGCTCTACAAACAATCCAAATCCATGGAAGTTATGCACAGTGACATACGTAGAAGAAACCAAGATCCTAATCCGAATGCTCCCAATCA TTCTCAGCACAGTCTTCATGAACACATGCTTAGCCCAACTTCAAACCTTCACGATCCAACAGTCCACAACTATGGACCGAAATCTATTGGGCTTTGAAGT TCCCGGCCCATCTGTCCCGGTCATCCCACTTCTCTTTATGTTCCTCCTCATCCCTTTATACGACCGTGTGTTCGTCCCAATCGCCAGAAGATTCACCGGC ATCCCCACCGGAATACGCCATCTTCAGCGCATTGCCGTCGGCCTGGTGCTCTCCGCCATCTCCATGGCCGTGGCTGGAATCGTTGAGACAAAGAGGAAAA GAGTGGCGGTTGAGAATGATATGGTGGATTCGGTGCTCCCCTTGCCGTACAGCGTGTTCTGGTTAGGGTTTCAGTACGCCATCTTCGGGGCGGCCGACAT GTTTACCCTAGTGGGGTTGTTGGAATTTTTCTACTCGGAGAGCTCGAGTGGGATGAAGGCACTGAGCACGGCGATATCATGGACATCATTGGCGTTTGGG TATTATTTGAGCACGGTGGTTGTGGAGGTAGTGAATAAAGTGAGCGGTGGCTGGCTAGCGAGCAATAATTTGAACAGGGATAAACTGAACTACTTCTACT GGTTGTTGGCCGGGTTGAGTGTTGTGAATCTGGGTGTGTATATGGTGTGTGCTTCTTGGTATAGATACAAGGAGGTGGAAGTTGTGGCAGAGGAATTTGG GGAAGAAGACCCCAAAGGGAAGCAGGTGACAATGGCGACTACTGTTTAG
AA sequence Show only first row Show all	>Lus10032876 pacid=23164815 polypeptide=Lus10032876 locus=Lus10032876.g ID=Lus10032876.BGIv1.0 annot-version=v1.0 MGAAKKPRGRLGGNRATLFVFAMEGLENMAFVANAVSLFTYFYGYMNFSITKSATTLTNLMGTAFLLSLFGGFLSDTYLSRFTTCVLFGTFELLGYGLLA VQAHFNQLRPTPCNGAAALNNANQCEGANSGQSAMLYIGLYLIALGTGGVKAALPALGADQFDTRNPKEAPKLSSFFNWFLFSLTAGAIIGVTFVVWISA NQGWDWGFGLSGLAVLFAVVFVSMGKSLYRMNSPSGSPFVRFAQVFVAAIRNRNLPTPKAEDELYEIREKGKGGINHVEILQRTNQFRFLDKAAIVMNPT NDLQSSTNNPNPWKLCTVTYVEETKILIRMLPIILSTVFMNTCLAQLQTFTIQQSTTMDRNLLGFEVPGPSVPVIPLLFMFLLIPLYDRVFVPIARRFTG IPTGIRHLQRIAVGLVLSAISMAVAGIVETKRKRVAVENDMVDSVLPLPYSVFWLGFQYAIFGAADMFTLVGLLEFFYSESSSGMKALSTAISWTSLAFG YYLSTVVVEVVNKVSGGWLASNNLNRDKLNYFYWLLAGLSVVNLGVYMVCASWYRYKEVEVVAEEFGEEDPKGKQVTMATTV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G27040			Major facilitator superfamily ...		Lus10032876 [exp]	0	1
AT2G19460			Protein of unknown function (D...		Lus10006019 [exp]	1.0	0.8563
AT4G37370		CYP81D8	"cytochrome P450, family 81, s...		Lus10018711 [exp]	3.5	0.7960
AT1G18880		NRT1.9	nitrate transporter 1.9, Major...		Lus10015351 [exp]	11.2	0.7180
AT5G19790	AP2_ERF	RAP2.11	related to AP2 11 (.1)		Lus10012703 [exp]	14.4	0.6837
AT3G02460			Ypt/Rab-GAP domain of gyp1p su...		Lus10034099 [exp]	17.8	0.7451
AT5G66420			unknown protein		Lus10014286 [exp]	18.9	0.6664
AT2G19160			Core-2/I-branching beta-1,6-N-...		Lus10006952 [exp]	22.6	0.7107
AT5G05980		ATDFB, FPGS1	folylpolyglutamate synthetase ...		Lus10040261 [exp]	55.0	0.7004
AT2G19160			Core-2/I-branching beta-1,6-N-...		Lus10025464 [exp]	63.6	0.6660
AT3G09410			Pectinacetylesterase family pr...		Lus10025347 [exp]	75.6	0.7101

Compare expression of checked genes

Lus10032876 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.