Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G13090 249 / 7e-82 XTH2 xyloglucan endotransglucosylase/hydrolase 2 (.1) AT4G13080 244 / 6e-80 XTH1 xyloglucan endotransglucosylase/hydrolase 1 (.1) AT3G25050 231 / 9e-75 XTH3 xyloglucan endotransglucosylase/hydrolase 3 (.1) AT5G13870 226 / 7e-73 EXGT-A4, XTH5, XTR12 endoxyloglucan transferase A4, xyloglucan endotransglucosylase/hydrolase 5 (.1) AT2G06850 219 / 3e-70 XTH4, EXT, EXGT-A1 endoxyloglucan transferase A1, xyloglucan endotransglucosylase/hydrolase 4 (.1) AT4G37800 217 / 2e-69 XTH7, XTR15 xyloglucan endotransglucosylase/hydrolase 7 (.1) AT5G65730 204 / 3e-64 XTH6, XTR10 xyloglucan endotransglucosylase/hydrolase 6 (.1) AT4G03210 198 / 5e-62 XTH9, EXGT-A6, XTR16 xyloglucan endotransglucosylase/hydrolase 9 (.1.2) AT1G11545 194 / 2e-60 XTH8 xyloglucan endotransglucosylase/hydrolase 8 (.1) AT5G57550 194 / 2e-60 XTR3, XTH25, EXGT-A5 xyloglucan endotransglycosylase 3, xyloglucan endotransglucosylase/hydrolase 25 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038182 [exp] 235 / 3e-76 AT4G13090 319 / 2e-109 xyloglucan endotransglucosylase/hydrolase 2 (.1) Lus10025919 [exp] 233 / 2e-75 AT4G13090 318 / 4e-109 xyloglucan endotransglucosylase/hydrolase 2 (.1) Lus10011597 [exp] 222 / 4e-71 AT5G65730 469 / 7e-169 xyloglucan endotransglucosylase/hydrolase 6 (.1) Lus10039643 [exp] 219 / 5e-70 AT5G65730 469 / 1e-168 xyloglucan endotransglucosylase/hydrolase 6 (.1) Lus10003022 [exp] 218 / 3e-69 AT5G13870 506 / 0.0 endoxyloglucan transferase A4, xyloglucan endotransglucosylase/hydrolase 5 (.1) Lus10011052 [exp] 214 / 2e-67 AT5G13870 507 / 0.0 endoxyloglucan transferase A4, xyloglucan endotransglucosylase/hydrolase 5 (.1) Lus10040121 [exp] 213 / 2e-67 AT5G13870 493 / 5e-178 endoxyloglucan transferase A4, xyloglucan endotransglucosylase/hydrolase 5 (.1) Lus10022782 [exp] 212 / 2e-67 AT3G25050 246 / 5e-81 xyloglucan endotransglucosylase/hydrolase 3 (.1) Lus10030923 [exp] 211 / 1e-66 AT5G13870 491 / 3e-177 endoxyloglucan transferase A4, xyloglucan endotransglucosylase/hydrolase 5 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G244200 [exp] 283 / 3e-95 AT4G13090 321 / 3e-110 xyloglucan endotransglucosylase/hydrolase 2 (.1) Potri.001G071000 [exp] 222 / 4e-71 AT5G13870 504 / 0.0 endoxyloglucan transferase A4, xyloglucan endotransglucosylase/hydrolase 5 (.1) Potri.014G140300 [exp] 222 / 5e-71 AT5G13870 527 / 0.0 endoxyloglucan transferase A4, xyloglucan endotransglucosylase/hydrolase 5 (.1) Potri.003G159700 [exp] 221 / 1e-70 AT5G13870 500 / 0.0 endoxyloglucan transferase A4, xyloglucan endotransglucosylase/hydrolase 5 (.1) Potri.007G008500 [exp] 218 / 9e-70 AT5G65730 472 / 6e-170 xyloglucan endotransglucosylase/hydrolase 6 (.1) Potri.009G083800 [exp] 218 / 2e-69 AT2G14620 454 / 1e-162 xyloglucan endotransglucosylase/hydrolase 10 (.1) Potri.013G152400 [exp] 213 / 2e-67 AT4G03210 442 / 2e-158 xyloglucan endotransglucosylase/hydrolase 9 (.1.2) Potri.019G125000 [exp] 207 / 3e-65 AT4G03210 450 / 3e-161 xyloglucan endotransglucosylase/hydrolase 9 (.1.2) Potri.002G060500 [exp] 204 / 4e-64 AT4G14130 424 / 3e-151 xyloglucan endotransglycosylase 7, xyloglucan endotransglucosylase/hydrolase 15 (.1) Potri.005G201200 [exp] 203 / 6e-64 AT4G14130 405 / 2e-143 xyloglucan endotransglycosylase 7, xyloglucan endotransglucosylase/hydrolase 15 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0004 [flax] [poplar] Concanavalin PF00722 [flax] [poplar] Glyco_hydro_16 Glycosyl hydrolases family 16 CL0004 [flax] [poplar] Concanavalin PF06955 [flax] [poplar] XET_C Xyloglucan endo-transglycosylase (XET) C-terminus
Representative CDS sequence Show only first row Show all	>Lus10032879 pacid=23164848 polypeptide=Lus10032879 locus=Lus10032879.g ID=Lus10032879.BGIv1.0 annot-version=v1.0 ATGGGAATTGCCCTTTTTTGTAATTTAAGTTTCGACTTGACTGTCTACATAATTTTTGATTTAATCCATTTCAACCCACCCAACGGCGGCCGCAGTGGTC ACCACCCAACGGCGGCCGCAGGGGTCACTGACAACGACAACGACGTTCCTTTCCAACAGAACTACCAAATCTTGTATGGACAATACCACACTAAAGTGTT CGGAGAAAACAATACGGTTGACCTCACCATCGATGCAGGCTCAGGGTCTGGATTTGGGTCTTACCAAAGATTTGCGTCAGGATCATTTGTTATGAGAATC AAGTTGGCACCCAAAGATACTTCATGTATTGTCACATCTTTCTATTTGACTTCAGCATATGAGCCTCATGATGAGATAGATTTTGAATTTTTGGGTGGCG AATCGTACGAATTACAAACAAATATTTATAGCAACGGATTAGGTGGAAGAGAGCAAAAAGTTGCCCTTTGGTTCGATCCCACAACGGATTTCCACACTTA TCAGATCCTCTGGAACCAGCATCAGATTGTGTTTTTGGTGGACACAGTTCCGATAAGGGTGTTTAAGAACAATAGCGACATAGGAGTGCCTTATCCGTGG AGACCCATGCAAGTGGAAGCTACAATATGGGAGGGAGATTGGGCGTGCAAGGCCGGGAAGGCGAATATGAGCCAAGCCCCATTTGTGGCCAGCTATCAGA ATTTCGGCATCATGGCTTGCCCCGCAGATAATTATAATCCCAGTACAAGGGAACCGTGTTATTCTACTGATTTATGGTGGAATTTCCCCAAACGATGGGA GCTGGATCCCAGACAAAAACAAAGTTACAGAAACGTCATGGCTCGTCATTTCACTTATGATTATTGTCAAGATAGGGTTAGGTACCCTGTTACACCTCCT GAGTGCCCATCAGATTTATCTTTCTAA
AA sequence Show only first row Show all	>Lus10032879 pacid=23164848 polypeptide=Lus10032879 locus=Lus10032879.g ID=Lus10032879.BGIv1.0 annot-version=v1.0 MGIALFCNLSFDLTVYIIFDLIHFNPPNGGRSGHHPTAAAGVTDNDNDVPFQQNYQILYGQYHTKVFGENNTVDLTIDAGSGSGFGSYQRFASGSFVMRI KLAPKDTSCIVTSFYLTSAYEPHDEIDFEFLGGESYELQTNIYSNGLGGREQKVALWFDPTTDFHTYQILWNQHQIVFLVDTVPIRVFKNNSDIGVPYPW RPMQVEATIWEGDWACKAGKANMSQAPFVASYQNFGIMACPADNYNPSTREPCYSTDLWWNFPKRWELDPRQKQSYRNVMARHFTYDYCQDRVRYPVTPP ECPSDLSF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G13090		XTH2	xyloglucan endotransglucosylas...		Lus10032879 [exp]	0	1
AT5G22450			unknown protein		Lus10000530 [exp]	3.6	1.0000
					Lus10023589 [exp]	5.9	1.0000
AT4G17220		ATMAP70-5	microtubule-associated protein...		Lus10003908 [exp]	6.2	1.0000
					Lus10003536 [exp]	6.5	1.0000
					Lus10012998 [exp]	7.1	1.0000
					Lus10011078 [exp]	7.5	1.0000
					Lus10028667 [exp]	7.7	1.0000
					Lus10011425 [exp]	10.0	1.0000
AT2G20420			ATP citrate lyase (ACL) family...		Lus10022902 [exp]	10.1	1.0000
					Lus10027689 [exp]	11.2	1.0000

Compare expression of checked genes

Lus10032879 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.