Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G09680 597 / 0 ATCTC1 conserved telomere maintenance component 1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G129000 [exp] 1129 / 0 AT4G09680 730 / 0.0 conserved telomere maintenance component 1 (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10032880 pacid=23164806 polypeptide=Lus10032880 locus=Lus10032880.g ID=Lus10032880.BGIv1.0 annot-version=v1.0 ATGGTAGAATCTCCAGAGGTACTTGCAATCTCAGAGTTGCTCCGTCGTGGCCGGGCCTTCACCGCCACTTCATCAGTCCGTTCCTCTTCTGGCGTTTCTG TCCGTCATTCATCTTCCTTCGTTGGTGAATTGAACGACAAACGACTACCTAATCCGCCACGGAAGCCATTTCTTGAGCCGAATGGTACTGACCCTAGCTC TAAATTCCTTGACCCTCTGAATCGTGCAGCAATCTTAATCGGAACCGTAACTATTCCTTCTGAGAGCTTACAATGTCCGCATAAGAGTTGTTTTCAATTC TCTGATGGCTTATCTGCCAGCATTTGCTGTGATGTTCTCGACTTTCGAGTCCAGTTAGTTGGAAGCAGAATACACGTTCTCGCTTGGAATTTTCTTCCTC TCAGCCATGGTAAGGGTGGATTTTTGGAGATTATCCGGTGGGATTTCCCAGAATCTGGTAGTGTGCTCTCCTCTTGCTCAAGCATAGATTCCGTTCGACT TGATTCCTCTTCTTGTTCTTTGCTTCCATGTCATCCTCCCAAAGAAAGGAATTCAAAGGCTTGTTATAGTGTCCATGGCCAAATAGAATCATTAACCCCC TTTTCTGTTGTCCCTTGCTCAATTGGCGCCAACAAGTTGCAAAGTCTCCCCGGCTTTATTGCCCAAATTATGGTTTGCCAGTGTCGATTGTGTAGTTGTA CAGAAGTAGCTGAAATCATTGGAAATTCAGGCCAGGCACAGGATTGTCATCGTTTCACGGAAGGCAAGTTTGTATATTTTTGGGGTTCAGCTTCTCATTG GCATCCAGTTATCACAAAGCTCGTAGGACATATCATCACCTTATCAGGGTTGAAAAAGAAGCTGATTCAAATCAGCAAAGAGGAGTCTGAATTGATGTTC GTGACTACTGAAAACTCAACTTTGCATTTAGCTAGAGCGTGTAAGAAATGGTTGCCCTTTTCAGGAAGTGCTTTCAGGGGTAAAGGGGAGATTGGTGTTT ATACTGGCACTATCAGAGGAATCTATATGCAAGGAATGGTTATGGAGCTGGACAAAGAAGTATGGCTTTTACTCGCCAATCGTTTTCTTACTCTGCCACA CAGCCTTAGACTCGGCACCGTGATTACGGTGATCAATGCACATTTTGTAAATCCAAAATTTCCTTGGACAAAAATGCTCATACTTGGCACATGCATAAAA TCTAGCATTATCGTGGAGTCATTCTCCCCTTTGGATACGAGATGTCTCATGCTATCACAATCACAGAGTCAACTGGGAATGTTCATCGAGTCCTTGAGAT TTTCTGTCAGGTTATGGGCGCTTATCACTGTTGCATGCTTCCAGAAAAAATTCATTGGAATTTTGTCAGAAAAAGAGATCCTGGGATCGAAAAATCGTAA AGTGTTTTCCGAGTTCTGCAAACATTATGCAAATGGGTGTGGCAGTGAGCCGTATATTGATAACCTCAGATTGGTGGTCCCGTTATCTATTTTAGTTCAT CACTGTGAGGTCTTATGGACTAAATCACAGTTTCAGCTAGAGACCGATCATCATTTTTCCGCTGAACTTTCTCGTTCCGGCATTTTTACAATTCAAAGTA CCTCGTGTCAATCATGGAGAAGGGCCCTTTCAAGTGAAGACATAGGTTTTACCTTGCTTGGAAATTTGAAGATTTCTTCAGCTTCTGGAAGGCTACAGCT TGTAGATGCAACTGGCAGCATTGATGTCATAGTACCAGACCTCCCATCAACTTGGAATGCCAAGAATATCTATAAGGTTGTCAAGTATAGTATTATCGTA GAGGGCAAGCCTAATTCTGCACGTCACCCAGGCTTGCTTTATCAGGACGCTCTTTCTTGCAGACATATATTTCACTTAACTCCAACTAGAGAGACAAACT TAACTGTTTATGCTTATTTCCACTTCGGGGATGTCAGCTGTCAAAATGTTCCTTTCTGTTCTTCTTACAATAATGATTGTACCGAGGAACTTTGCAGTGG GAATTTCCATGTACTTCTGGTCACACATAAGTATCCTCTCCTACAAAAGTTTCAAGACGTCCCAGTTGTATCTGATGGGGCTGCAACATTTGCCGAGGCC ATAATCTTGCCCTGGGAACTGTTTGTCTCGGCTAAAGATGAATGTCAACATTCAAATAGGGATGATTGCTTAAAAGATGGTCATTATGGAACGAACTATG GGGAATCTGTGCCCTATAAGAAGCACAAACCTGATTCAACACCCAGTCTATCAGATGCTCCACTAACAGTGGATAATCCAGGATATGGCGGATATGGACT GAACAGTCTATCTGCTTCTGTCAGTGTCAGAAATTCCTCAAACATGATGTGTAGAAATCTCATATCTCCTGAGATTCTTTCTTATGCCACTATTAGAACT GCTAATAGCAAGACTGTGTATATCTCGGCGAAGTTGCTCTGCACACAATGTACTGTGAAGAACAGGGTTGATCATAAGCCGAGAACACAGAAGATACTGC TGGAATTTGATTCTGCAAATATTCACAAATACCAGTTGTTGCAGATTGGTGCATATTACATTATAAAGCATCATCCAGAAGACTGTCTATGTGCTTGTAT GGCATATAACAACTTTAACAGTGGTAAAGTTCATGTTAAGTCCAGCATTCATATATGGAGTCTTTCATTCTCTAATGATAATGGTGTCCCAAATTATATA CAATCACAAGGAGCCTCCCAGAACGATCAAACTTCCTGCACTGCAAAGGTTCCGGCGGGGGATGACATTGAGCTGTCTCTGCAGAATTCCACCTTCAGTT CTACAGAATTATGGGCAGATGCTTGTCTTCATCCTCCATCCACTGTAATTCGTCTTTTAGAAGCAAAGCATAAAGAAATCCTGGGAGTTTCTTTTGAGCC AATAGTTAAGGAAAAGAATTCTGGCGATTCTCCCTGTCCCCGTTCTGGATTGTCTGATTCAAGTAACATATTTCCTGTGGGAAGATTATTGTCTATATGC GGATGTGTGATTTCTGTCCATGGTCTGGATTGCAGTTGCCTCCATATTAATTCGAACAGTGAAGTAATGGATGATTTTGGTCAAACAGGAGCTCTTCAGG GGCGTAAAAATATTGTTCATGTGCTGGTTTTGGTGGACGATCAAATGGTTAGCATTTCTGGATCTGTACGATCATATCCAGTTGGATTTGGCCCGGGTGT CACTGCAACTTTCTTTCGGGTTCTAAAATTGAAGGGAGCCTATAGATTGATGCTTACTCCTGTTTCATTTATCGTTGTTAACTCCATTAGGGCTTCAACT AAATTGGATGTTGACAAATCTTTGAACAACCCGGTATTGAAGACATTAGCAACTCGATCAATGGATAATGTTCCCTACGGAATGTTGTCAGAGCTCCATC AGCTTCCAGATAGTAAGCCCATGAGGATCAACTGCAGGGTTATCAGTGTCCCTGTTCTCGTTCTAGAGAAGAGAAAGAAGCATGGCCATCTACAAGCGGA TTTTCAGTCTGTGACAGATTTGTTAGATATAACAATTGCGGGATTTCTGCTGGATGATGGATCCTCATCTTGCTTTTGCTGGTGTAACGGTGAAAGAGCT GCGACATTATTATGTATTCATGAAAAACTCCCCATCAGAGCTTTGGGTGGCTACTCGTTGAAGTGGATGGAAAATGGCAGCGTGAAATCCAAAATCTATC ATCTAGAAAGAATTTTGAGGAAACATGGTCGAGTGATTGTGACCAACTCTGGACCTACGGGAGATTTTAGCCATCAAGATGTCAGTGTTTCAGCAAATTC AGATATTCCGCTTAGTGCCTTTGATGAGAACTTTCTCAAATTCCTCGTCTTCAATGCTTGTTTTCGCACAACCTTGGCTGTGATTGGAAGCTTGATGGAT GCAAACACTGCCAAGCAGTTGGAGATGCAGCACCTTATGCATACGAGCTTGACAATTTGTCCTGTTCAAAACATATGGGCATCAGAGGTTTGTTATCCCA ATACTCTCAGTGATGCCAGGCACATGATGCAAGAGCTACTAGATGGGTACACATGCTGA
AA sequence Show only first row Show all	>Lus10032880 pacid=23164806 polypeptide=Lus10032880 locus=Lus10032880.g ID=Lus10032880.BGIv1.0 annot-version=v1.0 MVESPEVLAISELLRRGRAFTATSSVRSSSGVSVRHSSSFVGELNDKRLPNPPRKPFLEPNGTDPSSKFLDPLNRAAILIGTVTIPSESLQCPHKSCFQF SDGLSASICCDVLDFRVQLVGSRIHVLAWNFLPLSHGKGGFLEIIRWDFPESGSVLSSCSSIDSVRLDSSSCSLLPCHPPKERNSKACYSVHGQIESLTP FSVVPCSIGANKLQSLPGFIAQIMVCQCRLCSCTEVAEIIGNSGQAQDCHRFTEGKFVYFWGSASHWHPVITKLVGHIITLSGLKKKLIQISKEESELMF VTTENSTLHLARACKKWLPFSGSAFRGKGEIGVYTGTIRGIYMQGMVMELDKEVWLLLANRFLTLPHSLRLGTVITVINAHFVNPKFPWTKMLILGTCIK SSIIVESFSPLDTRCLMLSQSQSQLGMFIESLRFSVRLWALITVACFQKKFIGILSEKEILGSKNRKVFSEFCKHYANGCGSEPYIDNLRLVVPLSILVH HCEVLWTKSQFQLETDHHFSAELSRSGIFTIQSTSCQSWRRALSSEDIGFTLLGNLKISSASGRLQLVDATGSIDVIVPDLPSTWNAKNIYKVVKYSIIV EGKPNSARHPGLLYQDALSCRHIFHLTPTRETNLTVYAYFHFGDVSCQNVPFCSSYNNDCTEELCSGNFHVLLVTHKYPLLQKFQDVPVVSDGAATFAEA IILPWELFVSAKDECQHSNRDDCLKDGHYGTNYGESVPYKKHKPDSTPSLSDAPLTVDNPGYGGYGLNSLSASVSVRNSSNMMCRNLISPEILSYATIRT ANSKTVYISAKLLCTQCTVKNRVDHKPRTQKILLEFDSANIHKYQLLQIGAYYIIKHHPEDCLCACMAYNNFNSGKVHVKSSIHIWSLSFSNDNGVPNYI QSQGASQNDQTSCTAKVPAGDDIELSLQNSTFSSTELWADACLHPPSTVIRLLEAKHKEILGVSFEPIVKEKNSGDSPCPRSGLSDSSNIFPVGRLLSIC GCVISVHGLDCSCLHINSNSEVMDDFGQTGALQGRKNIVHVLVLVDDQMVSISGSVRSYPVGFGPGVTATFFRVLKLKGAYRLMLTPVSFIVVNSIRAST KLDVDKSLNNPVLKTLATRSMDNVPYGMLSELHQLPDSKPMRINCRVISVPVLVLEKRKKHGHLQADFQSVTDLLDITIAGFLLDDGSSSCFCWCNGERA ATLLCIHEKLPIRALGGYSLKWMENGSVKSKIYHLERILRKHGRVIVTNSGPTGDFSHQDVSVSANSDIPLSAFDENFLKFLVFNACFRTTLAVIGSLMD ANTAKQLEMQHLMHTSLTICPVQNIWASEVCYPNTLSDARHMMQELLDGYTC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G09680		ATCTC1	conserved telomere maintenance...		Lus10032880 [exp]	0	1
AT5G66030		ATGRIP, GRIP	Golgi-localized GRIP domain-co...		Lus10010675 [exp]	1.7	0.8410
AT5G24680			Peptidase C78, ubiquitin fold ...		Lus10032907 [exp]	2.4	0.8120
AT4G27910		SDG16, ATX4	SET domain protein 16 (.1)		Lus10005007 [exp]	4.0	0.8363
AT1G71210			Pentatricopeptide repeat (PPR)...		Lus10008998 [exp]	4.5	0.8234
AT5G56730			Insulinase (Peptidase family M...		Lus10012918 [exp]	5.2	0.8354
AT3G06620			PAS domain-containing protein ...		Lus10040540 [exp]	6.5	0.8044
AT1G70610		ABCB26, ATTAP1	ATP-binding cassette B26, tran...		Lus10022270 [exp]	10.7	0.8124
AT1G12930			ARM repeat superfamily protein...		Lus10012590 [exp]	10.8	0.7885
AT5G23490			unknown protein		Lus10004286 [exp]	12.0	0.7771
AT1G04790			RING/U-box superfamily protein...		Lus10023671 [exp]	14.3	0.7667

Compare expression of checked genes

Lus10032880 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.