Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G26530 95 / 2e-22 AR781 Protein of unknown function (DUF1645) (.1), Protein of unknown function (DUF1645) (.2) AT2G15760 76 / 1e-15 Protein of unknown function (DUF1645) (.1) AT3G62630 50 / 9e-07 Protein of unknown function (DUF1645) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006479 [exp] 373 / 1e-130 AT2G26530 133 / 4e-37 Protein of unknown function (DUF1645) (.1), Protein of unknown function (DUF1645) (.2) Lus10032766 [exp] 144 / 3e-40 AT2G26530 193 / 4e-59 Protein of unknown function (DUF1645) (.1), Protein of unknown function (DUF1645) (.2) Lus10021757 [exp] 142 / 1e-39 AT2G26530 194 / 2e-59 Protein of unknown function (DUF1645) (.1), Protein of unknown function (DUF1645) (.2) Lus10014025 [exp] 87 / 3e-19 AT2G15760 203 / 8e-63 Protein of unknown function (DUF1645) (.1) Lus10019892 [exp] 84 / 5e-18 AT2G15760 202 / 2e-62 Protein of unknown function (DUF1645) (.1) Lus10012069 [exp] 78 / 3e-16 AT2G15760 171 / 4e-51 Protein of unknown function (DUF1645) (.1) Lus10027912 [exp] 69 / 5e-13 AT2G15760 166 / 1e-48 Protein of unknown function (DUF1645) (.1) Lus10020690 [exp] 49 / 2e-06 AT3G62630 232 / 1e-72 Protein of unknown function (DUF1645) (.1) Lus10029855 [exp] 49 / 3e-06 AT3G62630 236 / 2e-74 Protein of unknown function (DUF1645) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G128500 [exp] 109 / 3e-27 AT2G26530 191 / 4e-58 Protein of unknown function (DUF1645) (.1), Protein of unknown function (DUF1645) (.2) Potri.014G034900 [exp] 108 / 5e-27 AT2G26530 174 / 1e-51 Protein of unknown function (DUF1645) (.1), Protein of unknown function (DUF1645) (.2) Potri.009G105400 [exp] 76 / 2e-15 AT2G15760 100 / 6e-24 Protein of unknown function (DUF1645) (.1) Potri.004G143500 [exp] 76 / 3e-15 AT2G15760 137 / 1e-37 Protein of unknown function (DUF1645) (.1) Potri.013G010400 [exp] 50 / 6e-07 AT3G62630 199 / 7e-60 Protein of unknown function (DUF1645) (.1) Potri.005G019600 [exp] 50 / 8e-07 AT3G62630 218 / 5e-67 Protein of unknown function (DUF1645) (.1) Potri.010G041300 [exp] 41 / 0.0004 AT1G23710 169 / 5e-51 Protein of unknown function (DUF1645) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07816 [flax] [poplar] DUF1645 Protein of unknown function (DUF1645)
Representative CDS sequence Show only first row Show all	>Lus10032881 pacid=23164789 polypeptide=Lus10032881 locus=Lus10032881.g ID=Lus10032881.BGIv1.0 annot-version=v1.0 ATGTCAATAATGGAAGTGGCGTTACCTTCATCTCCTCCAAGCATGGGATTCGACTTCAACGACGCCAGGATTCTGCCTTTCCTCAGCGCTCCATCTTCCC CTCGCCGCTTCGGCGACTTGACTCTCAGCGCTCCCTCCAGCCCTTCTCGTGTTGCCGACCTCTACCGCAGCTTTGAGGACGATTTCCAACACTGGGAAGA ATTAGACAAGACCCCCCAGAAGCTCTCTTCCTTCAAAGAAGACGATTTCGCTTTCGATTTCACCCCTGATTCCGAGAAGGATTCCCTCCCTGCCGACCAG CTCTTCGCCGGCGGCAGAATCCGCCCTTCTCTGCAGGACGAAGTAGACACTATTAGAACTAAAATCCCTAATAACGAAAGGGGAAGGGGAAGAAGATCAG AGAGAGATTCTGGACTGAGCTCGAGTTCAAGCCGCAGGGGGGCCAGATCCGTTTCACCTTACAGAGTTTCACAGTATCCGTGGGAGGAGGAAGATCAATT CAGACAGCGGAATCAACACCAAATCACTAGTACTACTGCTGCTGCCACTAATACTAGTACTATTTATTCATCTGCTACAACTACTACGAAGAGTTCTTCG AGGAAGTGGAGGCTGAGGGATCTGCTCTTATTCAGAAGCGCATCAGAAGGAAGAGCGGGTGGCTTCTTCAAGAGACATGAAACTGATCATAGCTGCAACG TCATCCGGTCATCCGACAGCTTTGGTTCCAATAATAATAATAACAAGTCGACGTCGTCGTCGTCAAGGAAGAAAGCAGTTTCGGCTCACGAGCGACATTA CACAACCAACAAAGCAGCGTCTGAGGGTCTGAGGAAGAAGACTTTCTTGCCTTACAAACAGGGGATTCTCGGCAGATTTGCATTTGCTCCTGCTCTTCCG CGATGA
AA sequence Show only first row Show all	>Lus10032881 pacid=23164789 polypeptide=Lus10032881 locus=Lus10032881.g ID=Lus10032881.BGIv1.0 annot-version=v1.0 MSIMEVALPSSPPSMGFDFNDARILPFLSAPSSPRRFGDLTLSAPSSPSRVADLYRSFEDDFQHWEELDKTPQKLSSFKEDDFAFDFTPDSEKDSLPADQ LFAGGRIRPSLQDEVDTIRTKIPNNERGRGRRSERDSGLSSSSSRRGARSVSPYRVSQYPWEEEDQFRQRNQHQITSTTAAATNTSTIYSSATTTTKSSS RKWRLRDLLLFRSASEGRAGGFFKRHETDHSCNVIRSSDSFGSNNNNNKSTSSSSRKKAVSAHERHYTTNKAASEGLRKKTFLPYKQGILGRFAFAPALP R

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G26530		AR781	Protein of unknown function (D...		Lus10032881 [exp]	0	1
AT3G20600		NDR1	non race-specific disease resi...		Lus10043067 [exp]	1.4	0.9443
					Lus10018552 [exp]	1.7	0.9431
AT2G40140	C3HZnF	ATSZF2, CZF1, Z...	\(SALT-INDUCIBLE ZINC FINGER 2...		Lus10007493 [exp]	1.7	0.9529
AT3G07200			RING/U-box superfamily protein...		Lus10022569 [exp]	3.5	0.9358
AT4G27280			Calcium-binding EF-hand family...		Lus10033753 [exp]	4.9	0.9297
AT3G49930	C2H2ZnF		C2H2 and C2HC zinc fingers sup...		Lus10018696 [exp]	6.7	0.9196
AT3G20600		NDR1	non race-specific disease resi...		Lus10011162 [exp]	7.0	0.9294
					Lus10002111 [exp]	7.0	0.8679
AT2G40140	C3HZnF	ATSZF2, CZF1, Z...	\(SALT-INDUCIBLE ZINC FINGER 2...		Lus10028970 [exp]	8.4	0.9328
AT5G13200			GRAM domain family protein (.1...		Lus10031986 [exp]	8.5	0.8926

Compare expression of checked genes

Lus10032881 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.