Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G56270 535 / 0 WRKY ATWRKY2, WRKY2, WRKY23 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 2, WRKY DNA-binding protein 2 (.1) AT4G26440 380 / 1e-123 WRKY ATWRKY34, MSP3, WRKY34 MICROSPORE-SPECIFIC PROMOTER 3, WRKY DNA-binding protein 34 (.1) AT4G26640 303 / 4e-94 WRKY ATWRKY20, WRKY20 WRKY family transcription factor family protein (.1.2) AT2G38470 271 / 1e-82 WRKY ATWRKY33, WRKY33 WRKY DNA-binding protein 33 (.1) AT2G03340 268 / 2e-81 WRKY WRKY3 WRKY DNA-binding protein 3 (.1) AT1G13960 254 / 1e-76 WRKY WRKY4 WRKY DNA-binding protein 4 (.1.2) AT2G37260 202 / 9e-59 WRKY DSL1, ATWRKY44, TTG2 TRANSPARENT TESTA GLABRA 2, DR. STRANGELOVE 1, WRKY family transcription factor family protein (.1.2) AT2G04880 194 / 2e-54 WRKY ATWRKY1, ZAP1 zinc-dependent activator protein-1 (.1.2) AT4G12020 172 / 4e-44 WRKY MEKK4, MAPKKK11, ATWRKY19, WRKY19 MAPK/ERK KINASE KINASE 4, MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE 11, protein kinase family protein (.1.2.3) AT4G30935 165 / 4e-44 WRKY ATWRKY32, WRKY32 WRKY DNA-binding protein 32 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027139 [exp] 1385 / 0 AT5G56270 528 / 1e-179 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 2, WRKY DNA-binding protein 2 (.1) Lus10003769 [exp] 321 / 2e-100 AT4G26640 524 / 0.0 WRKY family transcription factor family protein (.1.2) Lus10016595 [exp] 320 / 2e-100 AT4G26640 556 / 0.0 WRKY family transcription factor family protein (.1.2) Lus10026838 [exp] 322 / 9e-100 AT5G56270 298 / 7e-91 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 2, WRKY DNA-binding protein 2 (.1) Lus10043167 [exp] 298 / 2e-92 AT4G26640 473 / 9e-163 WRKY family transcription factor family protein (.1.2) Lus10020215 [exp] 284 / 8e-87 AT5G56270 276 / 3e-84 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 2, WRKY DNA-binding protein 2 (.1) Lus10030424 [exp] 274 / 2e-84 AT1G13960 421 / 7e-144 WRKY DNA-binding protein 4 (.1.2) Lus10026634 [exp] 274 / 2e-84 AT1G13960 409 / 1e-139 WRKY DNA-binding protein 4 (.1.2) Lus10032580 [exp] 268 / 9e-83 AT4G26640 369 / 5e-125 WRKY family transcription factor family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G472800 [exp] 840 / 0 AT5G56270 585 / 0.0 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 2, WRKY DNA-binding protein 2 (.1) Potri.011G169300 [exp] 831 / 0 AT5G56270 588 / 0.0 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 2, WRKY DNA-binding protein 2 (.1) Potri.013G086000 [exp] 352 / 4e-111 AT5G56270 299 / 3e-91 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 2, WRKY DNA-binding protein 2 (.1) Potri.013G153400 [exp] 309 / 4e-96 AT2G38470 329 / 5e-106 WRKY DNA-binding protein 33 (.1) Potri.019G053900 [exp] 303 / 1e-94 AT5G56270 154 / 5e-40 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 2, WRKY DNA-binding protein 2 (.1) Potri.001G361600 [exp] 301 / 1e-93 AT4G26640 540 / 0.0 WRKY family transcription factor family protein (.1.2) Potri.011G087900 [exp] 292 / 5e-90 AT4G26640 555 / 0.0 WRKY family transcription factor family protein (.1.2) Potri.010G163000 [exp] 288 / 3e-89 AT1G13960 431 / 5e-147 WRKY DNA-binding protein 4 (.1.2) Potri.016G128300 [exp] 290 / 6e-89 AT2G38470 377 / 8e-125 WRKY DNA-binding protein 33 (.1) Potri.008G091900 [exp] 280 / 4e-86 AT2G03340 407 / 7e-138 WRKY DNA-binding protein 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0274 [flax] [poplar] WRKY-GCM1 PF03106 [flax] [poplar] WRKY WRKY DNA -binding domain
Representative CDS sequence Show only first row Show all	>Lus10032887 pacid=23160340 polypeptide=Lus10032887 locus=Lus10032887.g ID=Lus10032887.BGIv1.0 annot-version=v1.0 ATGGCTGGACTTGATGATAACGTTGCTATAATCAGGGACTGGTTGCCTCCTACTCCAAGTCCAAGAGCATTTTTCTCGACGATTCTAGGTGACGACATGA GCACAAGACCAAACCCTGACCAGTCCGGGGAGACCAGAATGGATGGCCTCTTCTTTGGAACAAGACAGCTGATGACAACTACAGAAGGAAATGCTGGAAC TAGAGATGCTGCTACAGTTTCTCAGGTGACCGATTCAGGTCCTTTTGCTGAACACAACAACACGAACACCACCCCTCGTGGGGGTCTTGTGGAAAGAATG GCAGCAAGAGCTGGGTTTAATGTTCCAAAGTTGAACACAGAAAGCATCATGAGGTCCACTGACCTTTCGCTTAACCCTCAGTCTCCGTACTTGACGATAC CACCTGGTCTCAGCCCGACGAGCCTATTGGACTCTCCTGTTTTCGTCAACTCTCTGGCACAGCCGTCTCCTACAACTGGGAAATTCTCCTTTTTCCCAAA TAGTAACAGCAAGGGCTTAATGTCTGAGCCTTCTTACACAAGTAAAGATAATTTCTTTGAGGATTTCAATTCTTCTTTCGCATTCAAGACTATTCCGGAA ATGAATTCCCCTTTTCTCACTTGTCCTCCAACAAAAGTTACTCCAGCTACTCTTCAGCAGCAATTTCCCAACACTGAGGCTTCGGTGCAGTCTGAGAATT CTCATGCACAAAACAAACAGTCCCTCCATTTTGCTTCAGACTTCTCTAACTCTGACAAGGAAAATTATGGTAAAGTTATTGCGAACGACACTGTCGGTGG TGGAAATGCAGCGAATTCTCCCACTCTTGACGATCAAGATGAAGAAGGAGATCGCGGAGGAGATTCCTCGATCGTTGGTGCTGGTGGTGCACCAGCTGAC GATGGATATAACTGGCGAAAATACGGACAGAAGCAAGTGAAAGGAAGCGAATATCCTCGCAGCTATTACAAATGTACGCATCAGAATTGTCCTGTAAAGA AGAAAGTCGAGCGCTCCCATGAGGGTCACATTACCGAGATTATATACAAGGGAGCTCACAACCATCCCAAACCACCTCCCAGCAGACGAGCTGCCATCGG AGGATCGTCATCATATTCTCTCATGGACATGCCTTTAGAAAACCCCGAACAAACCGGTGCGGAAAATGATCCGGTTTGGGCAGGTACACACAACAAGGGA ACTGCTGACAACAACATTGAGGTGACATCATCTGCTTCAGCTGCCCCGGAATTTGGTAACTTTCAGGCTCAGAATCGTGCCCATTTTGAATCGAGTGAAG CGGCTGTTGATGCCTCGTCTACCTTTTCTAACGATGAAGAAGATGACGATCGCGCTACACATGCTAGCGTAGGTTATGATGGTGAAGAGGATGAATCAGA TTCAAAGAGAAGGAAAATCGAAACTTTCACAGCTGCGGAGATGAGTGGAGCTACGAGGGCTATCCGTGAGCCGAGAGTAGTTGTCCAGACAACCAGTGAG GTGGACATACTGGATGACGGATATCGCTGGCGCAAGTATGGACAGAAGGTTGTGAAAGGAAATCCAAATCCAAGGAGCTATTATAAGTGCACCAATGCAG GCTGCACAGTGAGAAAGCATGTAGAAAGAGCATCACACGACCTGAAGTCAGTGATCACCACATACGAAGGAAAGCACAACCACGACGTCCCTGCAGCGCG CAACAGCAGCCATGTCGGCTCCGGAGCATCATCCACAACACCTGCACCTTACCAGTCTGCTGCTCAACTTTCAAGACCCGAGCCACCACAAGTTCACAAC AGCATGAACCGCGGGTGCGATAGGTCAGCTGCATTTGGAACTTTCGGAAGACAACAGCAGATGGTGGGGGGACCATCATCCAATGGCTTCTCTTTCGGAA TGAATCAGCCCGGTTTCGCCAACCTGGCAATGGCTGGATTATGTGCTGGGCAACCAAAGATGCCAATGATGCCATCAATGAATCCTTACTTAGCAGCAGG TCAGCAGCAACGCACATTTGGCGAAATGGGATTCATGATGCCCAAAGGAGAACCAAAGGTGGAGCCTGTCTCGGAATCTGGGTTGAATTTGTCAAACAAT CAAGCAATGTATCAGCAGTTCATGAACAGGCTGCCGCTTGGTCCTCATATGTGA
AA sequence Show only first row Show all	>Lus10032887 pacid=23160340 polypeptide=Lus10032887 locus=Lus10032887.g ID=Lus10032887.BGIv1.0 annot-version=v1.0 MAGLDDNVAIIRDWLPPTPSPRAFFSTILGDDMSTRPNPDQSGETRMDGLFFGTRQLMTTTEGNAGTRDAATVSQVTDSGPFAEHNNTNTTPRGGLVERM AARAGFNVPKLNTESIMRSTDLSLNPQSPYLTIPPGLSPTSLLDSPVFVNSLAQPSPTTGKFSFFPNSNSKGLMSEPSYTSKDNFFEDFNSSFAFKTIPE MNSPFLTCPPTKVTPATLQQQFPNTEASVQSENSHAQNKQSLHFASDFSNSDKENYGKVIANDTVGGGNAANSPTLDDQDEEGDRGGDSSIVGAGGAPAD DGYNWRKYGQKQVKGSEYPRSYYKCTHQNCPVKKKVERSHEGHITEIIYKGAHNHPKPPPSRRAAIGGSSSYSLMDMPLENPEQTGAENDPVWAGTHNKG TADNNIEVTSSASAAPEFGNFQAQNRAHFESSEAAVDASSTFSNDEEDDDRATHASVGYDGEEDESDSKRRKIETFTAAEMSGATRAIREPRVVVQTTSE VDILDDGYRWRKYGQKVVKGNPNPRSYYKCTNAGCTVRKHVERASHDLKSVITTYEGKHNHDVPAARNSSHVGSGASSTTPAPYQSAAQLSRPEPPQVHN SMNRGCDRSAAFGTFGRQQQMVGGPSSNGFSFGMNQPGFANLAMAGLCAGQPKMPMMPSMNPYLAAGQQQRTFGEMGFMMPKGEPKVEPVSESGLNLSNN QAMYQQFMNRLPLGPHM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G56270	WRKY	ATWRKY2, WRKY2,...	ARABIDOPSIS THALIANA WRKY DNA-...		Lus10032887 [exp]	0	1
AT2G28250		NCRK	Protein kinase superfamily pro...		Lus10021460 [exp]	1.7	0.8670
AT2G17970			2-oxoglutarate (2OG) and Fe(II...		Lus10041917 [exp]	2.0	0.8899
AT1G17820			Putative integral membrane pro...		Lus10018266 [exp]	2.4	0.8824
AT2G39920			HAD superfamily, subfamily III...		Lus10002714 [exp]	5.3	0.8396
AT3G51950	C3HZnF		Zinc finger (CCCH-type) family...		Lus10039575 [exp]	6.3	0.8587
AT2G35100		ARAD1	ARABINAN DEFICIENT 1, Exostosi...		Lus10038355 [exp]	7.5	0.8600
AT5G17680			disease resistance protein (TI...		Lus10019708 [exp]	7.9	0.8547
AT3G05030		ATNHX2, NHX2	sodium hydrogen exchanger 2 (....		Lus10040903 [exp]	8.4	0.8525
AT1G61065			Protein of unknown function (D...		Lus10011208 [exp]	11.1	0.8132
AT1G07420		SMO2-1, ATSMO1,...	Arabidopsis thaliana sterol 4-...		Lus10001556 [exp]	11.4	0.8058

Compare expression of checked genes

Lus10032887 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.