Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G55620 929 / 0 CLCF, ATCLC-F, CLC-F chloride channel F (.1.2) AT4G35440 334 / 3e-103 CLCE, ATCLC-E, CLC-E chloride channel E (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027138 [exp] 1354 / 0 AT1G55620 1050 / 0.0 chloride channel F (.1.2) Lus10026573 [exp] 174 / 2e-47 AT4G35440 455 / 4e-155 chloride channel E (.1.2) Lus10013857 [exp] 118 / 4e-29 AT4G35440 300 / 1e-96 chloride channel E (.1.2) Lus10013858 [exp] 109 / 3e-26 AT4G35440 171 / 2e-48 chloride channel E (.1.2) Lus10026574 [exp] 100 / 4e-23 AT4G35440 162 / 3e-45 chloride channel E (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G472700 [exp] 908 / 0 AT1G55620 860 / 0.0 chloride channel F (.1.2) Potri.004G209900 [exp] 318 / 5e-97 AT4G35440 730 / 0.0 chloride channel E (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00571 [flax] [poplar] CBS CBS domain PF00654 [flax] [poplar] Voltage_CLC Voltage gated chloride channel
Representative CDS sequence Show only first row Show all	>Lus10032888 pacid=23160401 polypeptide=Lus10032888 locus=Lus10032888.g ID=Lus10032888.BGIv1.0 annot-version=v1.0 ATGTCGGGAGTCGTCGGAGGGGACAGGGCAGAATACAGTGATCAGACCCATTTATTGAGATCCTATCCACACAGCCACAGAGCCACCACCACCGAAGGCG GCGAGGACAACGACATTGGCGACTTGGAAATGGCTTCTCAAGTTTCTACCCCGACCTCCAGTGGCAATATCACCGGCAACAGAGTGGCCTCCGGAGCTGG TGGCAGTGGAGAAGGTATTAAGGATCTGTTTCTTAAACATTTGGATCGGGGATTTTCCGGCCGACGGTACTCGAGTCTCAAGCGTGTCGAGCGGGATCGA GATGCTAATAATTCCGATCATCATGACGATTATGGCGGTGGTGGAGGTAGTGGTAGTCATTACAGCGACGATGATACTTTGGCCGATTCTGCGCCTCCGG AATGGGCGCTCCTGCTCGTTGGCTGCCTCCTCGGCCTCGCCACTGGTCTTTGTGTGGCTGCTTTTAATAAAGGGGTTCATGTAATACACGAATGGGCATG GGCTGGAACTCCAAATGAGGGTGCTGCCTGGCTTCGGCTGCAAACTTTGGCAGACACTTGGCATAGGATTCTCTTAGTACCAGTAACAGGAGGAGTCATT GTTGGGATGATGCACGGTTTAGTGGAAATATTGGAGAAGATAAGGCAGAGTAGTTCCTCTGAAAGGCAAGGCTTCGACTTTGTTGCTGGTGTCTTCCCCA CTATAAAAGCTATTCAGGCAGCTGTTACTCTAGGCACTGGTGGTTCTTTGGGTCCTGAAGGGCCCAGTGTAGATATTGGAAAGTCATGTGCAAACGGGAT CTCAGTTATGATGGAAAACAACAGAGAAAGGAAAATTGCTCTTGTTGCTGCTGGTTCGGCAGCTGGGATTGCTTCAGGTTTCAATGCTGCTGTTGCTGGT TGCTTTTTTGCTATTGAAACTGTCCTAAGGCCTCGCCGAGCTGAGAATTCACCCCCTTTTACAACCGCAATGATAATATTGGCTTCTGTTATATCATCAA CTGTATCCAATGTTTCACTGGGTACAAAATCAGCTTTTATAGTGCCACCATACGATTTGAAATCTGCTGCAGAATTACCTTTATACCTGATATTGGGAAT GCTCTGTGGTGCGGTAAGTGTGGTATTCACTCGCTTGGTTGCTTGGTTCACCAAGTCATTTGAATTTATTAGAGAAAGATTTGGTCTTCCTGCTGTCGTA TGTCCTGCACTAGGTGGTTTGGGGGCTGGGATAATTGCCCTCAAGTATCCAGGAATATTGTATTGGGGTTTCACAAATGTAGAAGAAATATTGCACACTG GAAAGAGTGCGTCTGCCCCTGGAATCTGGTTATTAACCCAACTTGCAGTTGCTAAAGTTGTGGCAACGGCTTTGTGCAAGGGATCAGGACTTGTAGGAGG ACTTTATGCACCAAGTTTGATGATTGGTGCTGCTGTTGGTGCTGTATTTGGTGGTTCAGCAGCAGAAATAATCAACTCTGCTATTCCGGGAAATGCAGCC GTTGCAGAGCCACAGGCATATGCATTGGTTGGTATGGCTGCAACACTTGCTTCAGTTTGTTCCGTCCCGTTGACATCTGTCTTGCTTTTATTCGAGTTGA CAAAAGACTACAGAATCATTCTCCCCCTCATGGGAGCAGTTGGATTGGCAATATGGGTTGCTTCTGTTTTCAATCAGCCCAAGGAAACTGAGTCATCTGA CACCCGTGTTTTGGGAAGAGGTTATTCTTCAGTTTCAAATTCCGACGACAAGCATGAATCTCACTGGAGAAGAAATGAATACGGAGATGACCTAGAACTC TCTGTCATGCAAAATCCAGTTGAACATGAGGGAGCCCTCGAAGATTTTCTTTTGGAAGATCTAAAGGTTTCAAGGGTGATGTCAAAGAACTATCCGAAGG TCTCAGCATCCTTGACTTTGAAGGAAGCTATAAAACATATGGATACCAAGAAGCAGAATTGTGTGTTTGTAGTTGATGATGAAGATTTACTTGAAGGAAT ACTAACCTATGGCGACATTAGACGACTTTCCAGTAAATCCGGCAATCCTTCCATCGATCCCACACTCGCAGATGTAAATAACAATCTTGTCTCTGCGGTT TGTACTAGAGGAATAAGTTATCGTGGACAATTACGTGGACTTCTGACCTGTTACCCCGACACCAAGCTGGCAACGGCCAAGGAGCTAATGGAAGCCAAAG GGATCAAGCAGTTACCAGTGGTTAAACACGGTAGAGCATCGTGGAAAGAGAGGAAGCGAAGGATCGTTGCTATTCTTCACTACGATGCAGTTTGGAACCA TATCAGAGACGAAGTAGCTCGACGAAGATCGGTGTATCAGCGTAGGAAAGAAAACGAATTGGAGTTGATTGGGAATGGTCATTGA
AA sequence Show only first row Show all	>Lus10032888 pacid=23160401 polypeptide=Lus10032888 locus=Lus10032888.g ID=Lus10032888.BGIv1.0 annot-version=v1.0 MSGVVGGDRAEYSDQTHLLRSYPHSHRATTTEGGEDNDIGDLEMASQVSTPTSSGNITGNRVASGAGGSGEGIKDLFLKHLDRGFSGRRYSSLKRVERDR DANNSDHHDDYGGGGGSGSHYSDDDTLADSAPPEWALLLVGCLLGLATGLCVAAFNKGVHVIHEWAWAGTPNEGAAWLRLQTLADTWHRILLVPVTGGVI VGMMHGLVEILEKIRQSSSSERQGFDFVAGVFPTIKAIQAAVTLGTGGSLGPEGPSVDIGKSCANGISVMMENNRERKIALVAAGSAAGIASGFNAAVAG CFFAIETVLRPRRAENSPPFTTAMIILASVISSTVSNVSLGTKSAFIVPPYDLKSAAELPLYLILGMLCGAVSVVFTRLVAWFTKSFEFIRERFGLPAVV CPALGGLGAGIIALKYPGILYWGFTNVEEILHTGKSASAPGIWLLTQLAVAKVVATALCKGSGLVGGLYAPSLMIGAAVGAVFGGSAAEIINSAIPGNAA VAEPQAYALVGMAATLASVCSVPLTSVLLLFELTKDYRIILPLMGAVGLAIWVASVFNQPKETESSDTRVLGRGYSSVSNSDDKHESHWRRNEYGDDLEL SVMQNPVEHEGALEDFLLEDLKVSRVMSKNYPKVSASLTLKEAIKHMDTKKQNCVFVVDDEDLLEGILTYGDIRRLSSKSGNPSIDPTLADVNNNLVSAV CTRGISYRGQLRGLLTCYPDTKLATAKELMEAKGIKQLPVVKHGRASWKERKRRIVAILHYDAVWNHIRDEVARRRSVYQRRKENELELIGNGH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G55620		CLCF, ATCLC-F, ...	chloride channel F (.1.2)		Lus10032888 [exp]	0	1
AT3G03790			ankyrin repeat family protein ...		Lus10010659 [exp]	1.4	0.9314
AT1G09910			Rhamnogalacturonate lyase fami...		Lus10000684 [exp]	2.4	0.9146
AT3G03790			ankyrin repeat family protein ...		Lus10013648 [exp]	3.0	0.9008
AT1G69360			Plant protein of unknown funct...		Lus10037122 [exp]	3.5	0.8695
AT1G77140		ATVPS45, VPS45	vacuolar protein sorting 45 (....		Lus10028622 [exp]	4.6	0.8837
AT3G24840			Sec14p-like phosphatidylinosit...		Lus10025924 [exp]	4.9	0.8871
AT2G17030			F-box family protein with a do...		Lus10023984 [exp]	5.1	0.8690
AT1G55620		CLCF, ATCLC-F, ...	chloride channel F (.1.2)		Lus10027138 [exp]	5.5	0.8766
AT2G25290		Phox1	Phox1, Octicosapeptide/Phox/Be...		Lus10038106 [exp]	5.7	0.8827
AT1G22610			C2 calcium/lipid-binding plant...		Lus10009460 [exp]	5.7	0.8946

Compare expression of checked genes

Lus10032888 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.