Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G13320 429 / 2e-148 ATCAX2, CAX2 cation exchanger 2 (.1) AT1G55730 424 / 1e-146 ATCAX5 cation exchanger 5 (.1.2) AT1G55720 395 / 6e-135 ATCAX6 cation exchanger 6 (.1) AT5G01490 235 / 7e-73 ATCAX4, CAX4 cation exchanger 4 (.1) AT2G38170 220 / 9e-68 RCI4, ATCAX1, CAX1 RARE COLD INDUCIBLE 4, cation exchanger 1 (.1.2.3) AT3G51860 218 / 2e-66 CAX1-LIKE, ATHCX1, ATCAX3, CAX3 cation exchanger 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027136 [exp] 763 / 0 AT3G13320 594 / 0.0 cation exchanger 2 (.1) Lus10033396 [exp] 379 / 2e-127 AT1G55730 571 / 0.0 cation exchanger 5 (.1.2) Lus10034853 [exp] 380 / 1e-126 AT1G55730 575 / 0.0 cation exchanger 5 (.1.2) Lus10009431 [exp] 343 / 1e-115 AT3G13320 404 / 3e-139 cation exchanger 2 (.1) Lus10006068 [exp] 341 / 2e-109 AT3G13320 516 / 1e-176 cation exchanger 2 (.1) Lus10027791 [exp] 211 / 2e-63 AT3G51860 575 / 0.0 cation exchanger 3 (.1) Lus10004819 [exp] 203 / 2e-60 AT2G38170 579 / 0.0 RARE COLD INDUCIBLE 4, cation exchanger 1 (.1.2.3) Lus10002490 [exp] 202 / 4e-60 AT3G51860 578 / 0.0 cation exchanger 3 (.1) Lus10035507 [exp] 193 / 1e-56 AT3G51860 579 / 0.0 cation exchanger 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G166900 [exp] 473 / 9e-166 AT3G13320 627 / 0.0 cation exchanger 2 (.1) Potri.001G469800 [exp] 471 / 5e-165 AT1G55730 630 / 0.0 cation exchanger 5 (.1.2) Potri.010G249200 [exp] 383 / 1e-130 AT1G55730 573 / 0.0 cation exchanger 5 (.1.2) Potri.016G115500 [exp] 234 / 9e-73 AT3G51860 570 / 0.0 cation exchanger 3 (.1) Potri.006G099900 [exp] 230 / 5e-71 AT3G51860 563 / 0.0 cation exchanger 3 (.1) Potri.001G251200 [exp] 203 / 1e-60 AT3G51860 490 / 7e-172 cation exchanger 3 (.1) Potri.009G045800 [exp] 201 / 6e-60 AT3G51860 495 / 9e-174 cation exchanger 3 (.1) Potri.001G375500 [exp] 43 / 0.0004 AT1G53210 665 / 0.0 sodium/calcium exchanger family protein / calcium-binding EF hand family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01699 [flax] [poplar] Na_Ca_ex Sodium/calcium exchanger protein
Representative CDS sequence Show only first row Show all	>Lus10032889 pacid=23160443 polypeptide=Lus10032889 locus=Lus10032889.g ID=Lus10032889.BGIv1.0 annot-version=v1.0 ATGGAAAAGAACGTACCGTTCTCACGAACTCGGTCACAGCTCGAAGTAGGTGGTGATCAGAAGTTGCCATTTTCGCGAACTCGATCACAGCTCGAAGGAA TTGACCCCCCATCGAAACCATTTTCTCGAACACGGTCGCACCTCGAAGGAACTGTTCCTCCGAAACCGTTTTCGCGAACCCACTCGCAACTCGAAATGAT GTCACTAACTAAGAACATCTCTGACCACGAGCACGAGGAATCGAGCCTTTTAACCTCGACCGCGTTGATTCGAGCTGCGCCAGATCTCGGTGTAGCAGCT GCAGAGGCATTGTCAGGGAACAAAATCACGCTGTGGCGGCGTATTGTATGCAAGAGCATAAAAACTGTAGTTTTTTCAAACAAGCTGAATTTCCTCATGC CTTTTGGCCCACTAGCTATGTTACTACATGCAATGGAGGGTCATAATGGATGGGTCTTCTTACTAACGTTATTAGGCATTACACCATTGGCCGAGCGCTT AGGTTATGCAACAGAGCAGCTGACTATCTACACAGGACCTACAATTGGGGGGCTTCTAAATGCCACGTTTGGAAATGCAACTGAACTGATCATTGCTATC TATGCCTTGAGGAATGAGATGCCAAGAGTTGTGCAGCTCTCGTTACTGGGTTCGATTCTGTCCAACATGTTACTAGTGCTTGGCTGTGCATTTTTCGCAG GTGGTCTCGTTTTTCGTAGAAAGGAACAAGTGTTTGACAAGGGAAATGCTACTATGAATTCAGGACTGCTACTAATGACAGTAATGGGACTGCTCTTTCC AGCAGTCCTGCATTCGACACACACGGAGGTTCATTATGGGAAATCAGAGTTGGCTCTTTCAAGATTCAGCAGTTGTGTTATGCTTCTGGTGTATGCTGCT TATCTCTGTTTCCAGCTCAATTCACGAAAGGATCATCGTCCTCCTACTGAGGAAACTAGTATGGAGGGTGATGATGCTGATGACGATGAGGTCCCAGATT TGACGAAAATGGAGTCAATTGTATGGCTTGCCATAATGACTGCTTGGATTTCTATCTTGTCAGAGTATTTAGTTGATGCTATACAGGGAGCATCTGTTGC ATGGAACATACCAATTGCCTTCATTGGAGTGATCTTGCTCCCTATCGTTGGGAATGCAGCAGAACACACCAGTGCTATTATGTTCGCAATGAAAGATAAG CTTCTTGGTATCAGAGCCGCCGGTTCTCAATTCCGCTGCCGGTAA
AA sequence Show only first row Show all	>Lus10032889 pacid=23160443 polypeptide=Lus10032889 locus=Lus10032889.g ID=Lus10032889.BGIv1.0 annot-version=v1.0 MEKNVPFSRTRSQLEVGGDQKLPFSRTRSQLEGIDPPSKPFSRTRSHLEGTVPPKPFSRTHSQLEMMSLTKNISDHEHEESSLLTSTALIRAAPDLGVAA AEALSGNKITLWRRIVCKSIKTVVFSNKLNFLMPFGPLAMLLHAMEGHNGWVFLLTLLGITPLAERLGYATEQLTIYTGPTIGGLLNATFGNATELIIAI YALRNEMPRVVQLSLLGSILSNMLLVLGCAFFAGGLVFRRKEQVFDKGNATMNSGLLLMTVMGLLFPAVLHSTHTEVHYGKSELALSRFSSCVMLLVYAA YLCFQLNSRKDHRPPTEETSMEGDDADDDEVPDLTKMESIVWLAIMTAWISILSEYLVDAIQGASVAWNIPIAFIGVILLPIVGNAAEHTSAIMFAMKDK LLGIRAAGSQFRCR

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G13320		ATCAX2, CAX2	cation exchanger 2 (.1)		Lus10032889 [exp]	0	1
					Lus10038267 [exp]	14.3	0.7484
AT2G27660			Cysteine/Histidine-rich C1 dom...		Lus10021061 [exp]	28.6	0.7371
AT3G02850		SKOR	STELAR K+ outward rectifier, S...		Lus10037694 [exp]	42.1	0.7295
AT1G16060	AP2_ERF	ADAP	ARIA-interacting double AP2 do...		Lus10024101 [exp]	54.0	0.7127
AT4G01070		UGT72B1, GT72B1	UDP-GLUCOSE-DEPENDENT GLUCOSYL...		Lus10003897 [exp]	70.7	0.6668
AT3G49180		RID3	ROOT INITIATION DEFECTIVE 3, T...		Lus10015407 [exp]	104.8	0.6434
AT5G48930		HCT	hydroxycinnamoyl-CoA shikimate...		Lus10022163 [exp]	110.9	0.6918
AT1G78955		CAMS1	camelliol C synthase 1 (.1)		Lus10016442 [exp]	121.7	0.6895
AT5G52170	HD	HDG7	homeodomain GLABROUS 7 (.1)		Lus10035095 [exp]	126.3	0.6926
AT1G66370	MYB	ATMYB113	myb domain protein 113 (.1)		Lus10023027 [exp]	128.8	0.6593

Compare expression of checked genes

Lus10032889 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.