Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G26190 189 / 5e-54 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) AT3G29760 174 / 6e-51 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) AT2G36540 128 / 3e-35 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) AT2G36550 96 / 3e-24 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027135 [exp] 358 / 1e-125 AT3G29760 134 / 5e-36 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Lus10007989 [exp] 226 / 9e-67 AT4G26190 247 / 3e-67 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Lus10021147 [exp] 225 / 1e-66 AT4G26190 241 / 2e-65 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Lus10034676 [exp] 208 / 9e-62 AT4G26190 225 / 3e-62 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Lus10017858 [exp] 203 / 8e-60 AT4G26190 224 / 8e-62 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Lus10019759 [exp] 151 / 8e-44 AT2G36540 174 / 1e-53 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Lus10016365 [exp] 85 / 2e-19 AT2G36540 87 / 1e-20 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Lus10019760 [exp] 76 / 7e-16 AT2G36540 93 / 7e-23 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G116400 [exp] 288 / 2e-91 AT4G26190 235 / 4e-65 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Potri.015G059000 [exp] 242 / 5e-77 AT4G26190 253 / 9e-75 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Potri.010G244200 [exp] 188 / 2e-58 AT2G36540 190 / 4e-60 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Potri.010G244400 [exp] 156 / 9e-46 AT2G36540 169 / 1e-51 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0137 [flax] [poplar] HAD PF03031 [flax] [poplar] NIF NLI interacting factor-like phosphatase
Representative CDS sequence Show only first row Show all	>Lus10032890 pacid=23160374 polypeptide=Lus10032890 locus=Lus10032890.g ID=Lus10032890.BGIv1.0 annot-version=v1.0 ATGGAACCAGTTAGCAATCATTTGAATGCCAGTCCAGTTGAATTAGATGCAAGAAAGGAAACTCCAAAAGAGCATGAAACTTCAGGAAAGCTTCTAAGCT TTGATTTAACAGCTATTTCAGCTGTCAATATCTCTGATGACAATGAAAGTGGAGCACCCATTCTCTCAGAGGCTGGTGGAATCAAGGATCCTTCCATTCC CTTGAGTATAAGATTCCCACTTTCTTCGAAGAAGCTGCTTATTCTTGATTTGAATGGATTGCTGGTTGATGTTGTTGGTTGTCCTCCGAAAGGTCATAAA CCAGACAAAAGGGTTGGAGTTAAATCATTTTTTGTAAGGCCGTTTTATCTGGATTTTCTCAAGTTCTGCTTTGAAATGTTCCATGTGGCTGTCTGGTCGT CAAGGACTAAAAAGAACATTGATATCCTGGTTGATTACTTGTTTGGAGATATGAAGAACAGTTTATTGTTTTGTTGGGATCTATCCCATTGTACAACAAC ACAGTTCATGACTCTGGAGAACAAGTACAAACCTTTGGTGTTCAAAGAGCTGAAGAGAGTTTGGGAAAAGCACGACCCTCAACTTCCATGGAAGAGAGGG TATTTCAACGAGTCGAACACATTATTAGTTGACGATTCTCCTTACAAAGCGTTACTTAATCCTGTTCACAGTGCAATCTATCCTACTTCCTACAGCTTTC AAGATATCAACGATAACTCACTTGGTGCTGGAGGAAACATAAGAGTATATCTTGAACAGTTATGTGGAGTTGAACATGTGCAGAAGTATGTAGAGCAAAA CCCATTTGGCCAAAAGGCTGTGAATGAAGGAAATGAGTCTTGGAGCTTTTATCTTCAAGTGATAAGCACATTGTACCCTTCCCGAGTTCAAGATGGAAAG TATGTCCATGTTGTGAACCCTGTGGTCGCATAG
AA sequence Show only first row Show all	>Lus10032890 pacid=23160374 polypeptide=Lus10032890 locus=Lus10032890.g ID=Lus10032890.BGIv1.0 annot-version=v1.0 MEPVSNHLNASPVELDARKETPKEHETSGKLLSFDLTAISAVNISDDNESGAPILSEAGGIKDPSIPLSIRFPLSSKKLLILDLNGLLVDVVGCPPKGHK PDKRVGVKSFFVRPFYLDFLKFCFEMFHVAVWSSRTKKNIDILVDYLFGDMKNSLLFCWDLSHCTTTQFMTLENKYKPLVFKELKRVWEKHDPQLPWKRG YFNESNTLLVDDSPYKALLNPVHSAIYPTSYSFQDINDNSLGAGGNIRVYLEQLCGVEHVQKYVEQNPFGQKAVNEGNESWSFYLQVISTLYPSRVQDGK YVHVVNPVVA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G26190			Haloacid dehalogenase-like hyd...		Lus10032890 [exp]	0	1
AT3G60450			Phosphoglycerate mutase family...		Lus10009779 [exp]	1.0	0.8904
AT4G20380		LSD1	LESION SIMULATING DISEASE, LSD...		Lus10000782 [exp]	2.0	0.8683
AT1G42990	bZIP	AtBZIP60	Bbasic region/leucine zipper m...		Lus10021534 [exp]	3.9	0.8473
AT3G47300		SELT	SELT-like protein precursor (....		Lus10018247 [exp]	5.5	0.8275
AT4G02410			Concanavalin A-like lectin pro...		Lus10033777 [exp]	6.5	0.8658
					Lus10033126 [exp]	7.4	0.8238
AT4G24160			alpha/beta-Hydrolases superfam...		Lus10024310 [exp]	7.5	0.8478
AT3G26670			Protein of unknown function (D...		Lus10012589 [exp]	9.2	0.7963
AT5G04850		VPS60.2	SNF7 family protein (.1.2)		Lus10028867 [exp]	10.1	0.8392
AT2G17890		CPK16	calcium-dependent protein kina...		Lus10028459 [exp]	10.6	0.8338

Compare expression of checked genes

Lus10032890 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.