Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G00850 135 / 1e-39 GIF3 GRF1-interacting factor 3 (.1) AT1G01160 116 / 1e-32 GIF2 GRF1-interacting factor 2 (.1.2) AT5G28640 95 / 3e-24 ATGIF1, GIF1, AN3 ARABIDOPSIS GRF1-INTERACTING FACTOR 1, ANGUSTIFOLIA 3, SSXT family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027132 [exp] 168 / 9e-54 AT4G00850 148 / 7e-46 GRF1-interacting factor 3 (.1) Lus10005524 [exp] 86 / 2e-20 AT5G28640 152 / 2e-46 ARABIDOPSIS GRF1-INTERACTING FACTOR 1, ANGUSTIFOLIA 3, SSXT family protein (.1) Lus10006568 [exp] 86 / 2e-20 AT5G28640 145 / 4e-43 ARABIDOPSIS GRF1-INTERACTING FACTOR 1, ANGUSTIFOLIA 3, SSXT family protein (.1) Lus10008847 [exp] 60 / 2e-12 AT1G01160 66 / 2e-15 GRF1-interacting factor 2 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G103900 [exp] 197 / 4e-64 AT4G00850 132 / 3e-38 GRF1-interacting factor 3 (.1) Potri.002G177600 [exp] 186 / 6e-60 AT4G00850 152 / 4e-46 GRF1-interacting factor 3 (.1) Potri.012G023100 [exp] 103 / 3e-28 AT4G00850 90 / 6e-23 GRF1-interacting factor 3 (.1) Potri.013G043700 [exp] 102 / 1e-26 AT5G28640 134 / 4e-39 ARABIDOPSIS GRF1-INTERACTING FACTOR 1, ANGUSTIFOLIA 3, SSXT family protein (.1) Potri.019G013100 [exp] 100 / 3e-26 AT5G28640 135 / 1e-39 ARABIDOPSIS GRF1-INTERACTING FACTOR 1, ANGUSTIFOLIA 3, SSXT family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05030 [flax] [poplar] SSXT SSXT protein (N-terminal region)
Representative CDS sequence Show only first row Show all	>Lus10032892 pacid=23160366 polypeptide=Lus10032892 locus=Lus10032892.g ID=Lus10032892.BGIv1.0 annot-version=v1.0 ATGCAGCAGCAACCGCAGATGATTCCCATGATGCCTTCATTCCCCCCTCAGAATATCACTACTGAGCAGATCCAAAAGTTTCTTGACGAGAACAAAAAGC TGATCTTAGCCATATTGGACAATCAAAACCTTGGCAAACTGGCTGAATGTGCTGAATACCAAGCACAACTACAAAAGAATCTAATGTATCTAGCAGCAAT CGCTGATGCACAACCACAGGGACCCGCGATGCATCCTCAGATGGGTCCGCACCCAGCAGCGATGCAGCAAGGAGCATACTACATGCAGCATCCTCAAGCA GCAGCAATGGGGGCACAGCAGCCTGGGAGTTTTCCTCCCAGGATGCCGGTACAATTCAATAACCCACATCAAATGCAGGATCCTCAGCAGCAGCAGCAAT TGCACCAACAAGCAGCAATGCATGCTCAAATGAGAATGAGGCCTTTAGGGGTCAATAACAACACCACCATGCATCCAATGCAAGCTGACACAAGTCTTGG AAGCAGTGGCCCAACCGCTGCAACCGGATCCAACAATGACACCCGTGGACCCAATAAACAAGATGCATCTGAAGCTGGTACAGCCGGTGCTGATGGACAG GGGAGTTCGGACTGGTGCTGA
AA sequence Show only first row Show all	>Lus10032892 pacid=23160366 polypeptide=Lus10032892 locus=Lus10032892.g ID=Lus10032892.BGIv1.0 annot-version=v1.0 MQQQPQMIPMMPSFPPQNITTEQIQKFLDENKKLILAILDNQNLGKLAECAEYQAQLQKNLMYLAAIADAQPQGPAMHPQMGPHPAAMQQGAYYMQHPQA AAMGAQQPGSFPPRMPVQFNNPHQMQDPQQQQQLHQQAAMHAQMRMRPLGVNNNTTMHPMQADTSLGSSGPTAATGSNNDTRGPNKQDASEAGTAGADGQ GSSDWC

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G00850		GIF3	GRF1-interacting factor 3 (.1)		Lus10032892 [exp]	0	1
AT4G24470	GATA	GATA25, TIFY1, ...	Zinc-finger protein expressed ...		Lus10032839 [exp]	1.4	0.8544
AT1G24430			HXXXD-type acyl-transferase fa...		Lus10037956 [exp]	3.0	0.8490
AT1G65700			Small nuclear ribonucleoprotei...		Lus10028183 [exp]	5.7	0.8253
AT3G58480			calmodulin-binding family prot...		Lus10016219 [exp]	8.7	0.8127
AT3G56720			unknown protein		Lus10027280 [exp]	9.7	0.7739
AT4G34460		ELK4, AGB1, ATA...	ERECTA-LIKE 4, GTP binding pro...		Lus10040464 [exp]	10.5	0.8093
AT3G07590			Small nuclear ribonucleoprotei...		Lus10003727 [exp]	11.0	0.8513
AT3G07590			Small nuclear ribonucleoprotei...		Lus10028022 [exp]	11.7	0.8448
AT5G03670			unknown protein		Lus10027723 [exp]	12.7	0.8140
AT5G18260			RING/U-box superfamily protein...		Lus10020256 [exp]	14.1	0.8309

Compare expression of checked genes

Lus10032892 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.