Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027131 [exp] 139 / 7e-44 AT1G30475 67 / 3e-14 unknown protein
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10032893 pacid=23160409 polypeptide=Lus10032893 locus=Lus10032893.g ID=Lus10032893.BGIv1.0 annot-version=v1.0 ATGCCTGTAGCCCAGGCTGTTGGCTCCTTGCCTTTGGTCTTGCACTCACCAGCAAACCTTGGGGGTCAATGGAGTCTCCAAAGCAAGAAATTGGAACTTG GGACAACCCAAAGTCTTCCACACTTCCAGTGTTTATATCAAAGGAAATGGCATGAACTTATGGTTACTAGCTCACTGAGGCTTTCTACGCAGTTGCTGAA TCCAACGAGACGCCATTCTGCTGCTCTGGAGAAGTATTGA
AA sequence Show only first row Show all	>Lus10032893 pacid=23160409 polypeptide=Lus10032893 locus=Lus10032893.g ID=Lus10032893.BGIv1.0 annot-version=v1.0 MPVAQAVGSLPLVLHSPANLGGQWSLQSKKLELGTTQSLPHFQCLYQRKWHELMVTSSLRLSTQLLNPTRRHSAALEKY

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10032893 [exp]	0	1
AT5G64320			Pentatricopeptide repeat (PPR)...		Lus10025014 [exp]	3.9	0.7550
AT5G63310		NDPK1A, NDPKIAI...	NDP KINASE 1A, NUCLEOSIDE DIPH...		Lus10014787 [exp]	5.0	0.8071
AT5G63310		NDPK1A, NDPKIAI...	NDP KINASE 1A, NUCLEOSIDE DIPH...		Lus10017931 [exp]	5.5	0.8043
AT1G17650		GR2, GLYR2	glyoxylate reductase 2 (.1)		Lus10015612 [exp]	5.7	0.7760
AT2G02410			unknown protein		Lus10042400 [exp]	9.9	0.8025
AT5G45390		NCLPP3, NCLPP4,...	NUCLEAR-ENCODED CLP PROTEASE P...		Lus10012156 [exp]	24.2	0.7388
AT2G21250			NAD(P)-linked oxidoreductase s...		Lus10018058 [exp]	24.2	0.7242
AT3G57930			unknown protein		Lus10031233 [exp]	24.4	0.6966
AT1G30130			unknown protein		Lus10028119 [exp]	25.1	0.6907
AT1G63270		ABCI1, ATNAP10	ATP-binding cassette I1, non-i...		Lus10022692 [exp]	29.8	0.7844

Compare expression of checked genes

Lus10032893 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.