Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G26550 293 / 6e-98 Got1/Sft2-like vescicle transport protein family (.1) AT5G56020 281 / 2e-93 Got1/Sft2-like vescicle transport protein family (.1) AT4G26555 232 / 1e-74 FKBP-like peptidyl-prolyl cis-trans isomerase family protein (.1) AT4G19830 62 / 1e-10 FKBP-like peptidyl-prolyl cis-trans isomerase family protein (.1) AT5G24170 57 / 2e-09 Got1/Sft2-like vescicle transport protein family (.1) AT5G23550 50 / 5e-07 Got1/Sft2-like vescicle transport protein family (.1) AT1G18170 49 / 3e-06 FKBP-like peptidyl-prolyl cis-trans isomerase family protein (.1) AT1G73655 48 / 3e-06 FKBP-like peptidyl-prolyl cis-trans isomerase family protein (.1) AT3G10060 48 / 5e-06 FKBP-like peptidyl-prolyl cis-trans isomerase family protein (.1) AT5G05420 45 / 2e-05 FKBP-like peptidyl-prolyl cis-trans isomerase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027128 [exp] 379 / 1e-131 AT4G26550 333 / 3e-117 Got1/Sft2-like vescicle transport protein family (.1) Lus10027129 [exp] 301 / 5e-101 AT4G26555 246 / 5e-83 FKBP-like peptidyl-prolyl cis-trans isomerase family protein (.1) Lus10036206 [exp] 58 / 1e-09 AT4G19830 260 / 4e-89 FKBP-like peptidyl-prolyl cis-trans isomerase family protein (.1) Lus10038345 [exp] 57 / 4e-09 AT4G19830 262 / 3e-89 FKBP-like peptidyl-prolyl cis-trans isomerase family protein (.1) Lus10035560 [exp] 57 / 7e-09 AT3G10060 296 / 2e-102 FKBP-like peptidyl-prolyl cis-trans isomerase family protein (.1) Lus10029537 [exp] 50 / 6e-07 AT5G23550 275 / 7e-96 Got1/Sft2-like vescicle transport protein family (.1) Lus10031342 [exp] 50 / 8e-07 AT1G18170 261 / 3e-89 FKBP-like peptidyl-prolyl cis-trans isomerase family protein (.1) Lus10039619 [exp] 49 / 1e-06 AT5G23550 279 / 3e-97 Got1/Sft2-like vescicle transport protein family (.1) Lus10027729 [exp] 47 / 1e-05 AT3G10060 285 / 1e-97 FKBP-like peptidyl-prolyl cis-trans isomerase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G164900 [exp] 285 / 9e-95 AT5G56020 325 / 5e-114 Got1/Sft2-like vescicle transport protein family (.1) Potri.014G170700 [exp] 282 / 1e-93 AT4G26550 310 / 3e-108 Got1/Sft2-like vescicle transport protein family (.1) Potri.001G467100 [exp] 246 / 4e-80 AT4G26555 268 / 3e-92 FKBP-like peptidyl-prolyl cis-trans isomerase family protein (.1) Potri.012G119800 [exp] 65 / 1e-11 AT4G19830 270 / 5e-92 FKBP-like peptidyl-prolyl cis-trans isomerase family protein (.1) Potri.015G017300 [exp] 55 / 9e-09 AT5G24170 220 / 1e-74 Got1/Sft2-like vescicle transport protein family (.1) Potri.001G467200 [exp] 51 / 5e-08 AT4G26550 72 / 9e-17 Got1/Sft2-like vescicle transport protein family (.1) Potri.012G048300 [exp] 50 / 1e-06 AT1G18170 249 / 3e-83 FKBP-like peptidyl-prolyl cis-trans isomerase family protein (.1) Potri.012G012700 [exp] 47 / 4e-06 AT5G24170 224 / 3e-76 Got1/Sft2-like vescicle transport protein family (.1) Potri.016G096600 [exp] 47 / 9e-06 AT3G10060 272 / 6e-93 FKBP-like peptidyl-prolyl cis-trans isomerase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0487 [flax] [poplar] FKBP PF00254 [flax] [poplar] FKBP_C FKBP-type peptidyl-prolyl cis-trans isomerase CL0487 [flax] [poplar] PF04178 [flax] [poplar] Got1 Got1/Sft2-like family
Representative CDS sequence Show only first row Show all	>Lus10032895 pacid=23160419 polypeptide=Lus10032895 locus=Lus10032895.g ID=Lus10032895.BGIv1.0 annot-version=v1.0 ATGAATTCTCTGTCCTCGCTCTCCAGTTTTCCTCCGCCAAGGGCAAGGAAACCCAAAAAAGCTAATAATAAGCCTCTCATGGCTTCCACTCGAGTTTCTG CTTCCATGGGAATGAACAAGCTCCCAAGGAGAATGGTTTTGGAGTTGATTACCAACACTTCCTTACTGTCCCTTCTTTATCCGGCATTGGCTGTTGTACC CAGTCCAGATATGGACGAGCCGCCTGAAATCATTCGGACGTTGAAGCTTGACAATGGGGTTAGGATTCAAGAGGTGATTGAAGGAGAAGGGCCAGAAGCT CGAGAAGGAGACCTGGTTGAGATAAACTATGTGTGTCGACGATCAAATGGATATTTTGTACACAGCACTGTGGATCAGTTTAGTGGTGAAAGCTCGCCTG TCATACTTCCTTTGAATGAGAACCAGTTTGATCATATCGCTGGCTGCTGCGTTTTGCAGATAATCAAAGGCTTGAAGGATGTTCTAGTTGGGATGAAGGT TGGAGGCAAGAGAAGGGCTTTGATACCTCCATCTGTGGGATATGTGAATGAAAGCTTGAAACCGATCCCTGAGGAGTTTGGTCCTCGGCGTAGTCTGCTC TCGCATGCAACGGAGCCGCTTATATTTGAGGAGCACATCGCGATGCAGAAAATGGCACAGAGTTGGTTCACAGGTAGCGGCAGCGAAGATCAGCAGCAGC AGCAGAAGCCCTCCTCGTCTCTTTTGTCTGAATGGAACTCTTACGCCACGTCCAGAAGCGCCGATGAGAGCAGCGGAATGAGCCTCGGATTTGATCTTGA ATCTGCCGTCCGGTCCGCCAACGAATCGGTCACCGGCACCTTCAACGTGGTTTCTAAAGGAGTTAGAGAGATGCCTGGAAGTTTGCAGACTGCCACTAGT AATATACCTTCAGGGAAAGCTCTTATGTATTTCGGCTTATTCCTAGCAACTGGTGTATTCTTTGTTTTCATCGCATTTTCTCTATTCCTTCCGGTAATAG TAATTGTGCCGCAGAAGTTTGCAATATGCTTCACTCTTGGATGTTTGTTTATCATCGCGTCATTATTTGCACTCAAAGGCCCACAGAACCAATTTGCACA TATGATTTCAAAAGAGAGACTTCCATTTTCCTTGGGGTTCATAGGCAGTATGGTAGGCACAATATATGTTTCCATGGTGCTACACAGCTACGTTCTTTCA GTACTCTTCTCAGTTATACAGGTGATGGCACTTGCATACTATGGAATCTCATACTTCCCTGGTGGATCTACTGGGTTGAAGTTCCTGACATCTTCATTGA CTTCAACTGCAACAAGAGCTTTCGGGAGGTGA
AA sequence Show only first row Show all	>Lus10032895 pacid=23160419 polypeptide=Lus10032895 locus=Lus10032895.g ID=Lus10032895.BGIv1.0 annot-version=v1.0 MNSLSSLSSFPPPRARKPKKANNKPLMASTRVSASMGMNKLPRRMVLELITNTSLLSLLYPALAVVPSPDMDEPPEIIRTLKLDNGVRIQEVIEGEGPEA REGDLVEINYVCRRSNGYFVHSTVDQFSGESSPVILPLNENQFDHIAGCCVLQIIKGLKDVLVGMKVGGKRRALIPPSVGYVNESLKPIPEEFGPRRSLL SHATEPLIFEEHIAMQKMAQSWFTGSGSEDQQQQQKPSSSLLSEWNSYATSRSADESSGMSLGFDLESAVRSANESVTGTFNVVSKGVREMPGSLQTATS NIPSGKALMYFGLFLATGVFFVFIAFSLFLPVIVIVPQKFAICFTLGCLFIIASLFALKGPQNQFAHMISKERLPFSLGFIGSMVGTIYVSMVLHSYVLS VLFSVIQVMALAYYGISYFPGGSTGLKFLTSSLTSTATRAFGR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G26550			Got1/Sft2-like vescicle transp...		Lus10032895 [exp]	0	1
AT4G25600			Oxoglutarate/iron-dependent ox...		Lus10014973 [exp]	3.9	0.8792
AT3G52440	DOF	AtDof3,5	Dof-type zinc finger DNA-bindi...		Lus10013586 [exp]	4.0	0.8538
AT3G14410			Nucleotide/sugar transporter f...		Lus10016923 [exp]	6.5	0.8556
AT1G73430			sec34-like family protein (.1....		Lus10001793 [exp]	8.1	0.8628
AT5G57330			Galactose mutarotase-like supe...		Lus10015540 [exp]	8.6	0.8751
AT3G26040			HXXXD-type acyl-transferase fa...		Lus10026736 [exp]	15.3	0.8705
AT5G62280			Protein of unknown function (D...		Lus10031122 [exp]	16.1	0.8293
AT5G58700		ATPLC4	phosphatidylinositol-speciwc p...		Lus10018241 [exp]	23.9	0.8637
AT1G26940			Cyclophilin-like peptidyl-prol...		Lus10037197 [exp]	25.9	0.8255
AT5G47320		RPS19	ribosomal protein S19 (.1)		Lus10027711 [exp]	26.1	0.8419

Compare expression of checked genes

Lus10032895 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.